Wall clock time and date at job start Sat Apr 11 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47059 * 2 1 4 4 C 1.52996 * 109.47184 * 119.99986 * 2 1 3 5 5 O 1.42898 * 109.47308 * 293.77397 * 4 2 1 6 6 C 1.53003 * 109.47063 * 240.00143 * 2 1 3 7 7 H 1.09001 * 109.70291 * 53.69983 * 6 2 1 8 8 C 1.53188 * 109.58775 * 293.34545 * 6 2 1 9 9 C 1.53038 * 109.31313 * 185.58011 * 8 6 2 10 10 C 1.53041 * 109.54074 * 61.36316 * 9 8 6 11 11 C 1.53197 * 109.31087 * 298.63732 * 10 9 8 12 12 N 1.46922 * 108.77609 * 54.63162 * 11 10 9 13 13 C 1.34777 * 120.62984 * 126.11719 * 12 11 10 14 14 O 1.21348 * 120.00488 * 174.47318 * 13 12 11 15 15 C 1.49453 * 119.99782 * 354.47346 * 13 12 11 16 16 O 1.21353 * 120.00089 * 6.10847 * 15 13 12 17 17 N 1.34783 * 119.99870 * 186.11604 * 15 13 12 18 18 C 1.46502 * 119.99796 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.46793 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.47145 * 299.99645 * 19 18 17 21 21 C 1.52997 * 109.47005 * 60.00230 * 19 18 17 22 22 C 1.50702 * 109.46926 * 179.97438 * 19 18 17 23 23 H 1.08008 * 119.99809 * 359.97438 * 22 19 18 24 24 C 1.37877 * 120.00002 * 179.97438 * 22 19 18 25 25 N 1.31515 * 119.99879 * 359.97438 * 24 22 19 26 26 Si 1.86803 * 119.99824 * 180.02562 * 24 22 19 27 27 H 1.48492 * 109.47308 * 0.02562 * 26 24 22 28 28 H 1.48492 * 109.47008 * 120.00157 * 26 24 22 29 29 H 1.48504 * 109.46825 * 240.00042 * 26 24 22 30 30 H 1.09000 * 109.47233 * 305.07573 * 1 2 3 31 31 H 1.09008 * 109.47285 * 65.07353 * 1 2 3 32 32 H 1.08995 * 109.46911 * 185.06976 * 1 2 3 33 33 H 1.09001 * 109.46678 * 53.77581 * 4 2 1 34 34 H 1.08998 * 109.47266 * 173.77005 * 4 2 1 35 35 H 0.96698 * 114.00303 * 180.02562 * 5 4 2 36 36 H 1.08998 * 109.49816 * 65.62520 * 8 6 2 37 37 H 1.09006 * 109.52347 * 305.54307 * 8 6 2 38 38 H 1.09000 * 109.45959 * 301.33778 * 9 8 6 39 39 H 1.09001 * 109.46239 * 181.38704 * 9 8 6 40 40 H 1.08997 * 109.49794 * 178.68433 * 10 9 8 41 41 H 1.09006 * 109.49654 * 58.58760 * 10 9 8 42 42 H 1.09000 * 109.58508 * 294.84471 * 11 10 9 43 43 H 1.08993 * 109.69937 * 174.49323 * 11 10 9 44 44 H 0.96993 * 119.99727 * 359.97438 * 17 15 13 45 45 H 1.09003 * 109.46891 * 299.99895 * 18 17 15 46 46 H 1.09000 * 109.46981 * 59.99749 * 18 17 15 47 47 H 1.09001 * 109.47013 * 60.00514 * 20 19 18 48 48 H 1.09002 * 109.46945 * 179.97438 * 20 19 18 49 49 H 1.09000 * 109.47446 * 300.00530 * 20 19 18 50 50 H 1.09003 * 109.47446 * 60.00002 * 21 19 18 51 51 H 1.09003 * 109.46931 * 180.02562 * 21 19 18 52 52 H 1.09001 * 109.47177 * 299.99500 * 21 19 18 53 53 H 0.96997 * 119.99536 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6867 0.0314 2.4114 6 6 2.0400 -0.7212 -1.2493 7 1 1.5897 -0.2795 -2.1382 8 6 1.6720 -2.2062 -1.1712 9 6 2.3034 -2.9469 -2.3522 10 6 3.8269 -2.8224 -2.2790 11 6 4.2194 -1.3443 -2.3697 12 7 3.5022 -0.5997 -1.3257 13 6 4.1734 0.1756 -0.4512 14 8 3.5645 0.8633 0.3418 15 6 5.6679 0.1883 -0.4580 16 8 6.2759 -0.4114 -1.3202 17 7 6.3404 0.8657 0.4936 18 6 7.8053 0.8778 0.4872 19 6 8.3135 1.7128 1.6642 20 6 7.7913 3.1452 1.5364 21 6 7.8142 1.1029 2.9755 22 6 9.8205 1.7247 1.6580 23 1 10.3616 1.1897 0.8915 24 6 10.5084 2.4185 2.6309 25 7 9.8495 3.0703 3.5639 26 14 12.3764 2.4337 2.6228 27 1 12.8730 1.6315 1.4762 28 1 12.8594 3.8320 2.4941 29 1 12.8816 1.8503 3.8916 30 1 -0.3634 0.5906 0.8410 31 1 -0.3634 0.4331 -0.9320 32 1 -0.3633 -1.0236 0.0908 33 1 1.5885 -1.7117 1.3066 34 1 3.1243 -0.8188 1.1952 35 1 1.9794 -0.3674 3.2423 36 1 0.5882 -2.3150 -1.2109 37 1 2.0457 -2.6255 -0.2370 38 1 1.9478 -2.5114 -3.2860 39 1 2.0227 -3.9994 -2.3127 40 1 4.2769 -3.3697 -3.1073 41 1 4.1808 -3.2355 -1.3344 42 1 3.9468 -0.9534 -3.3500 43 1 5.2940 -1.2397 -2.2205 44 1 5.8544 1.3453 1.1825 45 1 8.1774 -0.1428 0.5778 46 1 8.1610 1.3126 -0.4468 47 1 6.7013 3.1363 1.5411 48 1 8.1530 3.7400 2.3752 49 1 8.1470 3.5797 0.6022 50 1 8.1864 0.0824 3.0665 51 1 8.1759 1.6981 3.8140 52 1 6.7243 1.0940 2.9802 53 1 10.3335 3.5580 4.2485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597342548.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:32 Heat of formation + Delta-G solvation = -106.214404 kcal Electronic energy + Delta-G solvation = -32349.679186 eV Core-core repulsion = 28222.111125 eV Total energy + Delta-G solvation = -4127.568061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.50502 -40.51950 -38.66352 -38.32888 -37.67152 -35.26217 -34.91084 -33.78077 -32.75725 -30.46027 -28.26030 -27.60216 -27.35599 -27.15007 -26.39866 -24.94935 -23.93032 -21.84237 -21.63207 -20.75669 -20.21657 -18.77965 -18.31600 -17.83604 -17.59790 -17.32105 -16.80800 -16.64264 -16.36437 -15.90975 -15.82985 -15.58492 -15.10575 -14.83869 -14.77839 -14.63137 -14.47097 -14.26542 -14.05968 -13.83746 -13.49663 -13.42508 -13.23206 -13.13969 -12.99768 -12.76803 -12.72099 -12.56554 -12.41727 -12.29379 -12.12624 -11.92624 -11.75454 -11.62021 -11.52114 -11.40317 -11.25518 -10.86889 -10.72709 -10.68655 -10.42160 -10.14855 -9.69932 -9.62299 -8.02073 -6.18710 0.35914 1.32607 1.42933 1.47499 1.56515 2.14107 2.42866 2.55245 3.22017 3.24444 3.42531 3.71442 3.81859 4.00156 4.12227 4.16308 4.24867 4.33681 4.33976 4.40807 4.46777 4.51557 4.61342 4.66264 4.70164 4.82410 4.84520 4.90584 4.96125 4.98299 5.02095 5.02560 5.07414 5.09554 5.15823 5.17361 5.18238 5.28846 5.38375 5.40920 5.45343 5.55976 5.63596 5.67201 5.73766 6.04655 6.09868 6.18545 6.29086 6.40609 6.78988 6.86430 6.92763 7.01608 7.49618 8.97328 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017921 B = 0.002903 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.063780 B = 9643.105049 C =10668.055060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 H 0.096 0.904 4 C 0.098 3.902 5 O -0.583 6.583 6 C 0.148 3.852 7 H 0.095 0.905 8 C -0.131 4.131 9 C -0.117 4.117 10 C -0.128 4.128 11 C 0.038 3.962 12 N -0.570 5.570 13 C 0.501 3.499 14 O -0.516 6.516 15 C 0.495 3.505 16 O -0.534 6.534 17 N -0.678 5.678 18 C 0.143 3.857 19 C 0.051 3.949 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.525 4.525 23 H 0.052 0.948 24 C 0.026 3.974 25 N -0.901 5.901 26 Si 0.948 3.052 27 H -0.271 1.271 28 H -0.284 1.284 29 H -0.283 1.283 30 H 0.048 0.952 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.024 0.976 35 H 0.386 0.614 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.144 0.856 44 H 0.412 0.588 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.027 0.973 48 H 0.063 0.937 49 H 0.023 0.977 50 H 0.024 0.976 51 H 0.062 0.938 52 H 0.028 0.972 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.920 -11.785 -10.042 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 H 0.114 0.886 4 C 0.021 3.979 5 O -0.390 6.390 6 C 0.047 3.953 7 H 0.113 0.887 8 C -0.169 4.169 9 C -0.155 4.155 10 C -0.166 4.166 11 C -0.082 4.082 12 N -0.303 5.303 13 C 0.283 3.717 14 O -0.393 6.393 15 C 0.277 3.723 16 O -0.415 6.415 17 N -0.329 5.329 18 C 0.021 3.979 19 C 0.051 3.949 20 C -0.181 4.181 21 C -0.179 4.179 22 C -0.564 4.564 23 H 0.071 0.929 24 C -0.174 4.174 25 N -0.540 5.540 26 Si 0.775 3.225 27 H -0.195 1.195 28 H -0.210 1.210 29 H -0.209 1.209 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.234 0.766 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.160 0.840 44 H 0.250 0.750 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.046 0.954 48 H 0.081 0.919 49 H 0.042 0.958 50 H 0.043 0.957 51 H 0.081 0.919 52 H 0.047 0.953 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.029 -11.327 -10.514 24.515 hybrid contribution 1.405 0.111 1.012 1.735 sum -17.624 -11.217 -9.502 22.950 Atomic orbital electron populations 1.21806 0.93541 1.02307 1.01904 1.21749 0.96391 1.02335 0.91815 0.88647 1.22353 0.97048 0.92818 0.85716 1.86429 1.81999 1.53417 1.17117 1.21645 0.77607 0.97405 0.98669 0.88680 1.22101 1.02416 0.92838 0.99557 1.21557 0.94303 1.01253 0.98337 1.21861 0.97124 0.95052 1.02582 1.23427 1.03243 0.91752 0.89761 1.48081 1.07791 1.44148 1.30330 1.19947 0.87643 0.81938 0.82146 1.90843 1.67312 1.41632 1.39532 1.20660 0.89345 0.79977 0.82333 1.90232 1.69947 1.44315 1.37009 1.46108 1.08584 1.49311 1.28893 1.21551 0.76477 1.00112 0.99806 1.18367 0.94451 0.91709 0.90422 1.21699 0.96529 0.99243 1.00623 1.21681 0.96544 0.98793 1.00912 1.21283 0.91417 1.31681 1.12013 0.92946 1.25501 1.01817 0.94903 0.95132 1.69937 1.35919 1.32995 1.15160 0.85658 0.81496 0.77551 0.77807 1.19525 1.20997 1.20901 0.93321 0.91591 0.91590 0.93592 0.95771 0.76581 0.88335 0.92090 0.90612 0.90218 0.89222 0.93057 0.90441 0.84013 0.75023 0.92539 0.92692 0.95382 0.91860 0.95824 0.95719 0.91913 0.95349 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.72 71.98 0.63 -1.81 16 2 C -0.10 -2.35 1.86 -10.79 -0.02 -2.37 16 3 H 0.10 2.84 5.60 -29.39 -0.16 2.68 16 4 C 0.10 2.36 4.51 71.98 0.32 2.68 16 5 O -0.58 -15.22 13.34 -147.98 -1.97 -17.19 16 6 C 0.15 2.76 2.65 44.97 0.12 2.88 16 7 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 8 C -0.13 -1.81 4.67 30.67 0.14 -1.67 16 9 C -0.12 -1.39 5.88 30.62 0.18 -1.21 16 10 C -0.13 -2.05 6.08 30.67 0.19 -1.86 16 11 C 0.04 0.80 6.29 86.36 0.54 1.34 16 12 N -0.57 -13.35 2.93 -796.60 -2.33 -15.68 16 13 C 0.50 14.86 6.24 87.27 0.54 15.40 16 14 O -0.52 -16.76 10.47 -2.24 -0.02 -16.78 16 15 C 0.49 16.60 7.81 87.27 0.68 17.28 16 16 O -0.53 -18.81 13.02 -3.26 -0.04 -18.85 16 17 N -0.68 -24.31 4.95 -464.39 -2.30 -26.61 16 18 C 0.14 5.84 4.50 86.38 0.39 6.23 16 19 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 20 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 21 C -0.12 -5.49 8.08 71.98 0.58 -4.90 16 22 C -0.53 -27.16 8.01 25.60 0.21 -26.95 16 23 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 24 C 0.03 1.37 5.15 84.65 0.44 1.80 16 25 N -0.90 -48.31 9.35 21.45 0.20 -48.11 16 26 Si 0.95 42.06 29.54 68.60 2.03 44.09 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 28 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 29 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 30 H 0.05 1.02 7.99 -2.39 -0.02 1.00 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.07 0.93 7.01 -2.39 -0.02 0.92 16 33 H 0.05 0.92 6.60 -2.39 -0.02 0.90 16 34 H 0.02 0.68 5.25 -2.39 -0.01 0.67 16 35 H 0.39 7.14 9.12 -74.06 -0.68 6.47 16 36 H 0.10 0.99 7.03 -2.39 -0.02 0.97 16 37 H 0.06 0.98 6.17 -2.38 -0.01 0.97 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.14 3.80 3.69 -86.29 -0.32 3.48 16 44 H 0.41 14.70 5.65 -92.71 -0.52 14.18 16 45 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.03 1.13 6.86 -2.39 -0.02 1.12 16 48 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 49 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 52 H 0.03 1.12 6.86 -2.39 -0.02 1.11 16 53 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 Total: -1.00 -59.71 389.54 0.33 -59.38 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.73 Total: 35.62 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.50 Total: 4.12 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -4.43 Total: -90.39 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -2.04 Total: -52.83 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -59.71 0.33 -59.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597342548.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.832 kcal (2) G-P(sol) polarization free energy of solvation -59.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds