Wall clock time and date at job start Sat Apr 11 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46769 * 2 1 4 4 C 1.52998 * 109.47247 * 240.00338 * 2 1 3 5 5 N 1.46492 * 109.47436 * 64.99408 * 4 2 1 6 6 C 1.34777 * 120.00274 * 180.02562 * 5 4 2 7 7 O 1.21585 * 119.99896 * 4.96257 * 6 5 4 8 8 N 1.34781 * 120.00296 * 184.96741 * 6 5 4 9 9 C 1.46921 * 120.63080 * 174.53781 * 8 6 5 10 10 C 1.53192 * 108.89604 * 126.46072 * 9 8 6 11 11 C 1.53043 * 109.31226 * 54.55805 * 10 9 8 12 12 C 1.50697 * 109.45848 * 178.63195 * 11 10 9 13 13 H 1.08005 * 120.00056 * 3.85277 * 12 11 10 14 14 C 1.37881 * 119.99840 * 183.85682 * 12 11 10 15 15 N 1.31512 * 119.99935 * 8.55480 * 14 12 11 16 16 Si 1.86797 * 119.99663 * 188.55307 * 14 12 11 17 17 H 1.48500 * 109.47057 * 94.99242 * 16 14 12 18 18 H 1.48502 * 109.46960 * 214.98858 * 16 14 12 19 19 H 1.48496 * 109.47373 * 334.98972 * 16 14 12 20 20 C 1.53040 * 109.53717 * 298.63908 * 11 10 9 21 21 C 1.46957 * 120.65080 * 354.34773 * 8 6 5 22 22 C 1.52997 * 109.47455 * 119.99614 * 2 1 3 23 23 C 1.53002 * 109.47521 * 293.60949 * 22 2 1 24 24 C 1.52993 * 109.62985 * 186.01120 * 23 22 2 25 25 O 1.43751 * 109.63179 * 65.61751 * 23 22 2 26 26 C 1.44585 * 104.91976 * 215.71165 * 25 23 22 27 27 C 1.54920 * 101.63464 * 36.27284 * 26 25 23 28 28 O 1.43366 * 109.62716 * 306.40841 * 23 22 2 29 29 H 1.08997 * 109.46904 * 70.12468 * 1 2 3 30 30 H 1.09001 * 109.46254 * 190.12468 * 1 2 3 31 31 H 1.08998 * 109.47167 * 310.12042 * 1 2 3 32 32 H 1.09002 * 109.46631 * 304.99331 * 4 2 1 33 33 H 1.09004 * 109.46951 * 184.99687 * 4 2 1 34 34 H 0.97001 * 119.99744 * 0.02562 * 5 4 2 35 35 H 1.09004 * 109.58832 * 6.59844 * 9 8 6 36 36 H 1.09007 * 109.58638 * 246.31883 * 9 8 6 37 37 H 1.08994 * 109.49830 * 174.51800 * 10 9 8 38 38 H 1.09009 * 109.49286 * 294.57870 * 10 9 8 39 39 H 1.09002 * 109.45332 * 58.66054 * 11 10 9 40 40 H 0.97003 * 119.99719 * 180.02562 * 15 14 12 41 41 H 1.09005 * 109.49098 * 181.31332 * 20 11 10 42 42 H 1.08996 * 109.50044 * 301.41297 * 20 11 10 43 43 H 1.09000 * 109.46347 * 113.75211 * 21 8 6 44 44 H 1.08996 * 109.71476 * 353.47419 * 21 8 6 45 45 H 1.09002 * 109.46795 * 53.60630 * 22 2 1 46 46 H 1.09002 * 109.47205 * 173.60413 * 22 2 1 47 47 H 1.09007 * 109.46926 * 60.00027 * 24 23 22 48 48 H 1.09004 * 109.47022 * 179.97438 * 24 23 22 49 49 H 1.08994 * 109.47692 * 300.00152 * 24 23 22 50 50 H 1.08993 * 111.09047 * 278.15950 * 26 25 23 51 51 H 1.09004 * 110.97765 * 154.32633 * 26 25 23 52 52 H 1.08998 * 110.69036 * 205.95842 * 27 26 25 53 53 H 1.09000 * 110.69877 * 82.75199 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 1.6524 0.0353 -2.4423 6 6 1.9956 -0.4136 -3.6660 7 8 2.5472 -1.4904 -3.7858 8 7 1.7273 0.3312 -4.7568 9 6 2.2001 -0.0869 -6.0835 10 6 1.0083 -0.1262 -7.0452 11 6 0.3002 1.2305 -7.0292 12 6 -0.8528 1.2064 -7.9993 13 1 -1.0982 0.2948 -8.5239 14 6 -1.5942 2.3483 -8.2173 15 7 -1.1977 3.4961 -7.7125 16 14 -3.1618 2.2648 -9.2297 17 1 -4.3281 2.1066 -8.3241 18 1 -3.3111 3.5163 -10.0151 19 1 -3.0925 1.1052 -10.1548 20 6 -0.2250 1.5171 -5.6206 21 6 0.9528 1.5750 -4.6428 22 6 2.0401 -0.7211 1.2492 23 6 1.6655 0.0868 2.4934 24 6 2.3009 -0.5504 3.7306 25 8 0.2359 0.1096 2.6421 26 6 -0.0629 1.4234 3.1667 27 6 0.9822 2.2988 2.4309 28 8 2.1336 1.4345 2.3513 29 1 -0.3633 0.3494 -0.9664 30 1 -0.3632 -1.0117 0.1807 31 1 -0.3633 0.6622 0.7858 32 1 1.6055 -1.7198 -1.2951 33 1 3.1264 -0.7993 -1.2056 34 1 1.1488 0.8594 -2.3517 35 1 2.6480 -1.0784 -6.0161 36 1 2.9409 0.6246 -6.4485 37 1 1.3616 -0.3403 -8.0538 38 1 0.3125 -0.9041 -6.7306 39 1 1.0036 2.0106 -7.3203 40 1 -1.7196 4.2994 -7.8656 41 1 -0.7494 2.4727 -5.6154 42 1 -0.9094 0.7242 -5.3191 43 1 1.5907 2.4239 -4.8889 44 1 0.5779 1.6827 -3.6251 45 1 1.5863 -1.7105 1.3083 46 1 3.1241 -0.8213 1.1938 47 1 3.3851 -0.5600 3.6182 48 1 2.0328 0.0274 4.6152 49 1 1.9380 -1.5723 3.8400 50 1 0.0886 1.4587 4.2455 51 1 -1.0774 1.7259 2.9069 52 1 1.2113 3.1934 3.0098 53 1 0.6297 2.5635 1.4340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781939185.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:54 Heat of formation + Delta-G solvation = -147.143730 kcal Electronic energy + Delta-G solvation = -31180.719830 eV Core-core repulsion = 27051.376941 eV Total energy + Delta-G solvation = -4129.342890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78604 -41.32948 -38.71341 -37.43787 -35.93880 -35.34830 -34.66379 -33.11741 -32.38684 -31.63212 -29.37290 -28.26507 -27.71980 -26.88200 -24.62729 -24.09109 -23.90725 -22.32937 -21.69237 -21.33012 -20.28622 -19.11727 -18.49188 -18.23909 -17.52428 -17.12479 -16.76281 -16.66458 -16.49058 -15.88122 -15.52964 -15.27748 -15.18397 -14.89071 -14.61230 -14.54038 -14.40196 -14.29784 -14.10900 -13.93366 -13.75926 -13.54698 -13.23185 -13.16973 -13.10872 -13.06877 -12.85050 -12.78603 -12.47735 -12.26329 -12.17581 -12.12494 -12.00918 -11.83794 -11.69017 -11.48964 -11.27665 -10.91159 -10.90649 -10.81446 -10.45340 -10.39826 -10.18390 -9.37979 -8.11159 -6.19247 1.40526 1.43291 1.52173 1.71959 2.14386 2.44635 2.51686 2.92512 3.02173 3.18175 3.61031 3.72744 3.83547 3.94299 4.04655 4.09142 4.13779 4.22441 4.34393 4.35136 4.36558 4.44321 4.53177 4.57928 4.58808 4.63906 4.67499 4.74754 4.78095 4.79377 4.82799 4.88931 4.95774 4.97806 5.00860 5.06136 5.14931 5.21278 5.21514 5.22906 5.30519 5.37789 5.45776 5.49553 5.57109 5.67318 5.98357 6.03071 6.07145 6.21292 6.39318 6.90040 6.97567 7.47119 7.56216 8.95945 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.002356 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.089416 B =11881.908804 C =13024.767648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 H 0.081 0.919 4 C 0.146 3.854 5 N -0.735 5.735 6 C 0.702 3.298 7 O -0.637 6.637 8 N -0.622 5.622 9 C 0.135 3.865 10 C -0.113 4.113 11 C 0.045 3.955 12 C -0.535 4.535 13 H 0.046 0.954 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 0.944 3.056 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.108 4.108 21 C 0.122 3.878 22 C -0.115 4.115 23 C 0.254 3.746 24 C -0.169 4.169 25 O -0.378 6.378 26 C 0.011 3.989 27 C 0.013 3.987 28 O -0.393 6.393 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.404 0.596 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.008 0.992 40 H 0.262 0.738 41 H 0.065 0.935 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.066 0.934 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.123 0.877 52 H 0.115 0.885 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.602 -1.792 25.843 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 H 0.099 0.901 4 C 0.022 3.978 5 N -0.393 5.393 6 C 0.403 3.597 7 O -0.520 6.520 8 N -0.358 5.358 9 C 0.012 3.988 10 C -0.152 4.152 11 C 0.027 3.973 12 C -0.573 4.573 13 H 0.064 0.936 14 C -0.179 4.179 15 N -0.551 5.551 16 Si 0.771 3.229 17 H -0.202 1.202 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.147 4.147 21 C 0.000 4.000 22 C -0.153 4.153 23 C 0.177 3.823 24 C -0.227 4.227 25 O -0.299 6.299 26 C -0.065 4.065 27 C -0.063 4.063 28 O -0.314 6.314 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.243 0.757 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.100 0.900 50 H 0.103 0.897 51 H 0.141 0.859 52 H 0.133 0.867 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.038 -2.485 25.699 26.306 hybrid contribution -1.288 0.572 -0.829 1.636 sum 3.749 -1.913 24.870 25.223 Atomic orbital electron populations 1.21988 0.94077 1.02665 1.01416 1.21174 0.96822 1.00162 0.92327 0.90057 1.21251 0.99274 0.94730 0.82548 1.45222 1.60982 1.29201 1.03926 1.16002 0.79251 0.83090 0.81308 1.90823 1.51842 1.23120 1.86179 1.47382 1.56949 1.25065 1.06453 1.21456 0.96055 1.00581 0.80702 1.21867 0.96394 0.98817 0.98115 1.18595 0.94134 0.91955 0.92632 1.21521 1.15084 0.95996 1.24715 0.93588 1.25601 1.00246 0.95075 0.96943 1.70029 1.39115 0.98995 1.46928 0.85755 0.80777 0.77434 0.78958 1.20248 1.20883 1.19818 1.21704 0.96110 1.00895 0.95952 1.21725 0.93120 0.85274 0.99922 1.21934 1.02469 0.99203 0.91659 1.23404 0.79666 0.84059 0.95138 1.22352 1.02088 1.01809 0.96414 1.89270 1.21751 1.34270 1.84637 1.24493 1.01556 0.81019 0.99420 1.24390 0.85141 0.94940 1.01806 1.88885 1.31615 1.16414 1.94519 0.93883 0.93101 0.90426 0.92802 0.92277 0.75696 0.90272 0.91229 0.91743 0.94178 0.97339 0.92920 0.91618 0.95083 0.91387 0.89362 0.89465 0.89194 0.90353 0.91507 0.90045 0.89685 0.85913 0.86735 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.21 71.98 0.59 -2.08 16 2 C -0.09 -1.56 2.30 -10.79 -0.02 -1.59 16 3 H 0.08 1.51 7.31 -2.39 -0.02 1.50 16 4 C 0.15 3.47 5.07 86.38 0.44 3.91 16 5 N -0.74 -20.35 5.08 -478.54 -2.43 -22.79 16 6 C 0.70 25.35 8.29 179.05 1.49 26.83 16 7 O -0.64 -27.20 15.77 -3.98 -0.06 -27.26 16 8 N -0.62 -22.51 2.98 -836.83 -2.49 -25.00 16 9 C 0.14 5.05 6.44 86.36 0.56 5.60 16 10 C -0.11 -4.77 5.30 30.67 0.16 -4.61 16 11 C 0.05 2.20 1.94 -11.51 -0.02 2.17 16 12 C -0.54 -29.02 8.50 25.60 0.22 -28.80 16 13 H 0.05 2.51 7.76 -2.91 -0.02 2.49 16 14 C 0.02 1.12 5.20 84.66 0.44 1.56 16 15 N -0.91 -50.52 12.00 21.45 0.26 -50.27 16 16 Si 0.94 42.91 29.55 68.60 2.03 44.93 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 C -0.11 -4.70 5.20 30.67 0.16 -4.54 16 21 C 0.12 4.19 6.38 86.36 0.55 4.74 16 22 C -0.11 -1.81 4.31 30.59 0.13 -1.68 16 23 C 0.25 3.83 1.05 30.59 0.03 3.86 16 24 C -0.17 -2.05 9.19 71.98 0.66 -1.39 16 25 O -0.38 -5.81 8.24 -126.20 -1.04 -6.85 16 26 C 0.01 0.11 7.34 72.64 0.53 0.64 16 27 C 0.01 0.15 7.63 72.64 0.55 0.70 16 28 O -0.39 -6.46 9.83 -126.20 -1.24 -7.70 16 29 H 0.04 0.86 6.99 -2.39 -0.02 0.84 16 30 H 0.05 1.00 8.07 -2.39 -0.02 0.98 16 31 H 0.08 1.29 4.64 -2.39 -0.01 1.28 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.40 9.66 5.18 -92.71 -0.48 9.18 16 35 H 0.08 2.98 7.00 -2.38 -0.02 2.97 16 36 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.01 0.45 8.13 -2.39 -0.02 0.43 16 40 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 41 H 0.07 3.16 6.70 -2.38 -0.02 3.14 16 42 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.09 2.44 5.67 -2.39 -0.01 2.43 16 45 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 46 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 49 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.08 0.87 7.74 -2.39 -0.02 0.85 16 Total: -1.00 -66.91 402.67 1.89 -65.02 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.41 Total: 24.57 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.47 Total: 5.34 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -4.67 Total: -98.06 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -2.34 Total: -41.81 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -66.91 1.89 -65.02 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781939185.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.122 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds