Wall clock time and date at job start Sat Apr 11 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.50697 * 109.47122 * 174.99834 * 4 2 1 6 6 O 1.21277 * 120.00012 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00192 * 180.02562 * 5 4 2 8 8 C 1.46927 * 120.62721 * 359.72205 * 7 5 4 9 9 C 1.52765 * 109.00657 * 233.58201 * 8 7 5 10 10 C 1.53038 * 109.38203 * 305.58833 * 9 8 7 11 11 C 1.50706 * 109.44712 * 181.25266 * 10 9 8 12 12 H 1.07993 * 119.99765 * 239.93954 * 11 10 9 13 13 C 1.37874 * 119.99931 * 59.94247 * 11 10 9 14 14 N 1.31522 * 119.99931 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00170 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47122 * 89.99771 * 15 13 11 17 17 H 1.48498 * 109.47262 * 209.99780 * 15 13 11 18 18 H 1.48495 * 109.46669 * 329.99573 * 15 13 11 19 19 C 1.53035 * 109.54134 * 61.24100 * 10 9 8 20 20 C 1.46924 * 120.63292 * 180.02562 * 7 5 4 21 21 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 22 22 C 1.34777 * 119.99828 * 274.72131 * 21 2 1 23 23 O 1.21513 * 119.99898 * 0.28095 * 22 21 2 24 24 O 1.34638 * 120.00235 * 180.27525 * 22 21 2 25 25 C 1.45195 * 117.00135 * 180.02562 * 24 22 21 26 26 C 1.52999 * 109.47224 * 60.00489 * 25 24 22 27 27 C 1.53005 * 109.47161 * 180.02562 * 25 24 22 28 28 C 1.53002 * 109.47089 * 299.99988 * 25 24 22 29 29 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 31 31 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 32 32 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 33 33 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 34 34 H 1.08993 * 109.59164 * 353.41919 * 8 7 5 35 35 H 1.09003 * 109.58698 * 113.84585 * 8 7 5 36 36 H 1.09003 * 109.56088 * 185.55486 * 9 8 7 37 37 H 1.08999 * 109.38398 * 65.51715 * 9 8 7 38 38 H 1.09004 * 109.46514 * 301.21969 * 10 9 8 39 39 H 0.96999 * 119.99862 * 180.02562 * 14 13 11 40 40 H 1.08997 * 109.50295 * 178.68200 * 19 10 9 41 41 H 1.09002 * 109.52478 * 58.59763 * 19 10 9 42 42 H 1.09008 * 109.58838 * 246.16049 * 20 7 5 43 43 H 1.08999 * 109.58873 * 6.43703 * 20 7 5 44 44 H 0.97001 * 120.00384 * 95.00578 * 21 2 1 45 45 H 1.08996 * 109.47509 * 59.99392 * 26 25 24 46 46 H 1.09006 * 109.47298 * 180.02562 * 26 25 24 47 47 H 1.09003 * 109.46856 * 299.99470 * 26 25 24 48 48 H 1.08995 * 109.47042 * 59.99563 * 27 25 24 49 49 H 1.08992 * 109.47205 * 180.02562 * 27 25 24 50 50 H 1.09001 * 109.46587 * 300.00252 * 27 25 24 51 51 H 1.09003 * 109.46840 * 60.00621 * 28 25 24 52 52 H 1.09006 * 109.47115 * 179.97438 * 28 25 24 53 53 H 1.08995 * 109.47291 * 299.99982 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5418 -0.6149 -1.3127 6 8 4.1450 -0.0211 -0.4441 7 7 4.2148 -1.1797 -2.3348 8 6 3.4987 -1.9074 -3.3913 9 6 4.1016 -3.3042 -3.5297 10 6 5.6100 -3.1858 -3.7592 11 6 6.2016 -4.5618 -3.9266 12 1 6.9632 -4.9087 -3.2441 13 6 5.7705 -5.3775 -4.9511 14 7 4.8426 -4.9550 -5.7820 15 14 6.5032 -7.0832 -5.1583 16 1 5.7065 -8.0625 -4.3764 17 1 6.4804 -7.4607 -6.5943 18 1 7.9052 -7.0824 -4.6689 19 6 6.2580 -2.4952 -2.5570 20 6 5.6791 -1.0849 -2.4102 21 7 2.0183 -0.6906 1.1962 22 6 2.1523 -0.0169 2.3557 23 8 1.8633 1.1621 2.4103 24 8 2.6063 -0.6502 3.4537 25 6 2.7247 0.1377 4.6675 26 6 1.3515 0.6926 5.0514 27 6 3.2530 -0.7458 5.7996 28 6 3.6951 1.2967 4.4306 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 2.4444 -1.9905 -3.1276 35 1 3.6001 -1.3734 -4.3361 36 1 3.6440 -3.8170 -4.3758 37 1 3.9157 -3.8706 -2.6171 38 1 5.7956 -2.5988 -4.6587 39 1 4.5391 -5.5290 -6.5026 40 1 7.3353 -2.4321 -2.7106 41 1 6.0523 -3.0684 -1.6530 42 1 5.9624 -0.4822 -3.2732 43 1 6.0627 -0.6232 -1.5004 44 1 2.2491 -1.6318 1.1526 45 1 0.6602 -0.1331 5.2201 46 1 1.4405 1.2845 5.9624 47 1 0.9757 1.3221 4.2449 48 1 4.2313 -1.1408 5.5258 49 1 3.3414 -0.1544 6.7108 50 1 2.5620 -1.5717 5.9684 51 1 3.3192 1.9262 3.6241 52 1 3.7837 1.8885 5.3417 53 1 4.6734 0.9014 4.1572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782055001.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:57 Heat of formation + Delta-G solvation = -154.269085 kcal Electronic energy + Delta-G solvation = -31273.964248 eV Core-core repulsion = 27144.312380 eV Total energy + Delta-G solvation = -4129.651868 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.83385 -41.10966 -38.96605 -38.16196 -36.49072 -35.30644 -35.07219 -33.27622 -32.24803 -31.65015 -29.18546 -28.35165 -28.28754 -27.72121 -24.86489 -24.27664 -23.76888 -22.16160 -21.33012 -21.03425 -19.79178 -19.14080 -18.58197 -17.88169 -17.72552 -17.08972 -16.86255 -16.68966 -16.48090 -15.87502 -15.52680 -15.34059 -15.01637 -14.85279 -14.69416 -14.47811 -14.36721 -14.03689 -13.90962 -13.58290 -13.31801 -13.29005 -13.09048 -13.07116 -12.94022 -12.88842 -12.84892 -12.83589 -12.75989 -12.46869 -12.44559 -12.24868 -12.14050 -11.99122 -11.85874 -11.45042 -11.35092 -11.04324 -11.00275 -10.93530 -10.64107 -10.37335 -10.12967 -9.49816 -8.07344 -6.19969 1.26284 1.41258 1.44044 1.52249 1.70141 1.88917 2.12264 2.44551 3.19301 3.21037 3.55175 3.64626 3.77285 3.81733 3.96400 4.10737 4.22058 4.28803 4.33397 4.42771 4.51689 4.54909 4.58432 4.61521 4.62230 4.68553 4.72763 4.76605 4.78618 4.82906 4.85220 4.88213 4.88982 5.00871 5.05505 5.11852 5.19855 5.27637 5.29358 5.31319 5.34184 5.45401 5.46424 5.57930 5.64921 5.67628 6.00717 6.17286 6.41014 6.45496 6.58923 6.89088 7.24997 7.43146 7.47601 8.95857 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016165 B = 0.002442 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.761206 B =11462.859038 C =12081.095181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.177 3.823 3 H 0.068 0.932 4 C -0.143 4.143 5 C 0.504 3.496 6 O -0.583 6.583 7 N -0.604 5.604 8 C 0.113 3.887 9 C -0.116 4.116 10 C 0.045 3.955 11 C -0.534 4.534 12 H 0.044 0.956 13 C 0.020 3.980 14 N -0.910 5.910 15 Si 0.945 3.055 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.276 1.276 19 C -0.112 4.112 20 C 0.118 3.882 21 N -0.692 5.692 22 C 0.651 3.349 23 O -0.594 6.594 24 O -0.377 6.377 25 C 0.123 3.877 26 C -0.175 4.175 27 C -0.136 4.136 28 C -0.179 4.179 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.030 0.970 38 H 0.001 0.999 39 H 0.262 0.738 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.407 0.593 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.104 0.896 50 H 0.071 0.929 51 H 0.059 0.941 52 H 0.093 0.907 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.064 8.975 15.661 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.074 3.926 3 H 0.087 0.913 4 C -0.182 4.182 5 C 0.294 3.706 6 O -0.464 6.464 7 N -0.337 5.337 8 C -0.009 4.009 9 C -0.155 4.155 10 C 0.027 3.973 11 C -0.573 4.573 12 H 0.062 0.938 13 C -0.179 4.179 14 N -0.549 5.549 15 Si 0.772 3.228 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.201 1.201 19 C -0.150 4.150 20 C -0.005 4.005 21 N -0.350 5.350 22 C 0.404 3.596 23 O -0.486 6.486 24 O -0.292 6.292 25 C 0.087 3.913 26 C -0.232 4.232 27 C -0.193 4.193 28 C -0.236 4.236 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.049 0.951 38 H 0.020 0.980 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.242 0.758 45 H 0.083 0.917 46 H 0.110 0.890 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.123 0.877 50 H 0.090 0.910 51 H 0.078 0.922 52 H 0.112 0.888 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.966 9.814 16.038 21.767 hybrid contribution 1.055 -1.413 -0.559 1.850 sum -9.911 8.401 15.480 20.209 Atomic orbital electron populations 1.22155 0.92282 1.03659 1.03224 1.20710 0.94865 0.96171 0.80871 0.91333 1.22174 0.90186 1.05381 1.00492 1.21233 0.91464 0.77762 0.80181 1.90691 1.71328 1.44738 1.39651 1.48306 1.07264 1.53260 1.24822 1.21880 0.96836 0.92416 0.89727 1.21716 0.98251 0.94772 1.00771 1.18609 0.92956 0.93752 0.92023 1.21527 1.21571 1.01285 1.12879 0.93798 1.25582 0.95515 1.01282 0.95528 1.69932 1.30081 1.37694 1.17196 0.85751 0.78862 0.81002 0.77181 1.20191 1.20852 1.20062 1.21822 0.99421 0.94685 0.99081 1.21481 0.80236 0.97154 1.01595 1.44744 1.68994 1.14114 1.07125 1.18177 0.76284 0.83576 0.81542 1.90843 1.56796 1.15621 1.85300 1.86306 1.79194 1.44485 1.19196 1.22400 0.96871 0.91290 0.80755 1.22433 0.95260 1.02089 1.03413 1.21883 1.01704 1.00025 0.95655 1.22455 0.98506 0.98554 1.04058 0.90459 0.93366 0.88904 0.85708 0.83852 0.87159 0.91652 0.90079 0.95072 0.98041 0.92886 0.92429 0.94040 0.91632 0.90795 0.75760 0.91707 0.89008 0.91885 0.91962 0.87710 0.90952 0.92220 0.88800 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.49 71.98 0.68 -1.79 16 2 C 0.18 3.90 2.14 44.99 0.10 3.99 16 3 H 0.07 1.94 7.39 -2.39 -0.02 1.93 16 4 C -0.14 -2.76 3.59 29.85 0.11 -2.65 16 5 C 0.50 15.12 7.56 87.66 0.66 15.78 16 6 O -0.58 -22.04 14.77 -3.02 -0.04 -22.08 16 7 N -0.60 -19.29 2.98 -819.82 -2.44 -21.73 16 8 C 0.11 3.44 6.31 86.22 0.54 3.98 16 9 C -0.12 -4.77 5.14 30.53 0.16 -4.61 16 10 C 0.05 2.10 2.07 -11.51 -0.02 2.08 16 11 C -0.53 -28.24 8.56 25.60 0.22 -28.02 16 12 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 13 C 0.02 1.05 5.30 84.65 0.45 1.50 16 14 N -0.91 -48.71 11.30 21.45 0.24 -48.47 16 15 Si 0.95 42.01 29.54 68.60 2.03 44.03 16 16 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 19 C -0.11 -4.52 5.30 30.66 0.16 -4.36 16 20 C 0.12 4.18 6.43 86.35 0.56 4.74 16 21 N -0.69 -17.49 4.22 -570.13 -2.41 -19.89 16 22 C 0.65 19.33 8.02 129.79 1.04 20.37 16 23 O -0.59 -19.83 11.54 19.80 0.23 -19.60 16 24 O -0.38 -10.39 9.94 -55.48 -0.55 -10.94 16 25 C 0.12 2.69 1.13 -10.79 -0.01 2.67 16 26 C -0.17 -3.39 8.37 71.98 0.60 -2.79 16 27 C -0.14 -2.07 8.85 71.98 0.64 -1.44 16 28 C -0.18 -4.13 8.37 71.98 0.60 -3.53 16 29 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.12 1.92 7.68 -2.39 -0.02 1.90 16 33 H 0.14 1.92 7.95 -2.38 -0.02 1.90 16 34 H 0.11 2.42 5.93 -2.39 -0.01 2.41 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 3.76 6.03 -2.39 -0.01 3.74 16 37 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.00 0.07 8.14 -2.38 -0.02 0.06 16 39 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.07 2.68 7.00 -2.39 -0.02 2.67 16 44 H 0.41 9.32 8.71 -92.71 -0.81 8.51 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 47 H 0.06 1.57 5.88 -2.39 -0.01 1.56 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.06 1.75 5.88 -2.39 -0.01 1.74 16 52 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 53 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -68.77 411.03 3.62 -65.16 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.08 Total: 27.60 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.48 Total: 5.93 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -4.61 Total: -90.09 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.37 Total: -52.63 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -68.77 3.62 -65.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782055001.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.113 kcal (2) G-P(sol) polarization free energy of solvation -68.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds