Wall clock time and date at job start Sat Apr 11 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47168 * 2 1 4 4 C 1.50699 * 109.47147 * 239.99902 * 2 1 3 5 5 H 1.08001 * 120.00165 * 240.00117 * 4 2 1 6 6 C 1.37880 * 119.99725 * 59.99937 * 4 2 1 7 7 N 1.31515 * 120.00045 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 120.00282 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.47384 * 270.00030 * 8 6 4 10 10 H 1.48497 * 109.47471 * 149.99306 * 8 6 4 11 11 H 1.48506 * 109.46924 * 29.99631 * 8 6 4 12 12 N 1.46504 * 109.47026 * 120.00063 * 2 1 3 13 13 C 1.46506 * 119.99967 * 60.00071 * 12 2 1 14 14 C 1.34767 * 119.99981 * 239.99905 * 12 2 1 15 15 O 1.21285 * 120.00045 * 354.96570 * 14 12 2 16 16 C 1.50706 * 120.00020 * 174.96629 * 14 12 2 17 17 H 1.08997 * 112.74008 * 335.31956 * 16 14 12 18 18 N 1.47066 * 113.46875 * 204.57207 * 16 14 12 19 19 C 1.34779 * 136.05407 * 92.30159 * 18 16 14 20 20 O 1.21515 * 120.00092 * 0.02562 * 19 18 16 21 21 O 1.34640 * 120.00036 * 179.97438 * 19 18 16 22 22 C 1.45203 * 116.99782 * 180.02562 * 21 19 18 23 23 C 1.52997 * 109.46983 * 60.00513 * 22 21 19 24 24 C 1.53002 * 109.46782 * 180.02562 * 22 21 19 25 25 C 1.53000 * 109.47072 * 300.00193 * 22 21 19 26 26 C 1.47063 * 87.89111 * 272.34407 * 18 16 14 27 27 C 1.53496 * 113.46631 * 106.06604 * 16 14 12 28 28 C 1.53001 * 114.20562 * 202.30071 * 27 16 14 29 29 C 1.53003 * 114.20725 * 335.12055 * 27 16 14 30 30 H 1.08995 * 109.47176 * 59.99794 * 1 2 3 31 31 H 1.09006 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47247 * 299.99400 * 1 2 3 33 33 H 0.96994 * 120.00603 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46622 * 95.46930 * 13 12 2 35 35 H 1.08994 * 109.46964 * 215.46849 * 13 12 2 36 36 H 1.09003 * 109.47079 * 335.47513 * 13 12 2 37 37 H 1.08999 * 109.47271 * 60.00144 * 23 22 21 38 38 H 1.09001 * 109.46706 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.47203 * 299.99159 * 23 22 21 40 40 H 1.08998 * 109.47247 * 59.99717 * 24 22 21 41 41 H 1.08992 * 109.47025 * 180.02562 * 24 22 21 42 42 H 1.09006 * 109.47074 * 300.00051 * 24 22 21 43 43 H 1.09005 * 109.47095 * 60.00330 * 25 22 21 44 44 H 1.09005 * 109.46648 * 180.02562 * 25 22 21 45 45 H 1.09000 * 109.47433 * 299.99951 * 25 22 21 46 46 H 1.08997 * 113.47154 * 87.65600 * 26 18 16 47 47 H 1.08990 * 113.46860 * 218.04425 * 26 18 16 48 48 H 1.08999 * 109.46971 * 60.00188 * 28 27 16 49 49 H 1.08998 * 109.47229 * 179.97438 * 28 27 16 50 50 H 1.08996 * 109.47374 * 299.99779 * 28 27 16 51 51 H 1.09004 * 109.46763 * 55.08326 * 29 27 16 52 52 H 1.08998 * 109.47293 * 175.07642 * 29 27 16 53 53 H 1.08992 * 109.47511 * 295.08276 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 2.1380 -0.8590 -3.5566 8 14 0.6259 1.2798 -2.6541 9 1 -0.8021 0.8746 -2.6993 10 1 0.9772 1.9954 -3.9070 11 1 0.8492 2.1773 -1.4922 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0933 1.4280 14 6 2.7931 -0.0357 2.0833 15 8 3.1617 1.0955 1.8476 16 6 3.2017 -0.7089 3.3682 17 1 2.5092 -1.4942 3.6712 18 7 3.5241 0.2362 4.4479 19 6 2.8519 0.8187 5.4605 20 8 1.6721 0.5783 5.6243 21 8 3.4878 1.6662 6.2912 22 6 2.7014 2.2562 7.3598 23 6 2.1420 1.1473 8.2532 24 6 3.5878 3.1844 8.1926 25 6 1.5457 3.0590 6.7590 26 6 4.9023 0.2669 3.9358 27 6 4.6719 -1.1499 3.3867 28 6 4.9792 -2.2674 4.3855 29 6 5.2717 -1.3920 2.0001 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.9034 -0.5279 -4.4375 34 1 2.4633 -2.7356 1.0574 35 1 1.5286 -2.2619 2.4962 36 1 0.7381 -2.3258 0.9027 37 1 2.9653 0.5754 8.6812 38 1 1.5520 1.5902 9.0556 39 1 1.5103 0.4864 7.6596 40 1 3.9861 3.9743 7.5559 41 1 2.9977 3.6268 8.9950 42 1 4.4114 2.6127 8.6206 43 1 0.9141 2.3980 6.1654 44 1 0.9557 3.5022 7.5613 45 1 1.9443 3.8490 6.1225 46 1 5.0598 1.0137 3.1576 47 1 5.6564 0.3117 4.7215 48 1 4.3846 -3.1474 4.1404 49 1 6.0384 -2.5193 4.3343 50 1 4.7335 -1.9319 5.3930 51 1 5.1423 -0.4997 1.3874 52 1 6.3342 -1.6147 2.0976 53 1 4.7659 -2.2338 1.5273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793418445.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:04 Heat of formation + Delta-G solvation = -85.512206 kcal Electronic energy + Delta-G solvation = -32570.276674 eV Core-core repulsion = 28443.606327 eV Total energy + Delta-G solvation = -4126.670346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.74713 -41.39631 -39.66727 -37.78960 -37.22504 -35.18305 -34.80541 -33.46249 -32.48847 -28.76413 -28.41243 -28.32400 -28.25702 -27.77758 -27.64297 -27.12692 -23.83987 -22.77970 -20.86077 -20.67287 -19.31788 -18.96230 -18.77512 -18.24827 -17.82265 -17.42209 -17.11434 -16.52450 -16.44446 -16.09393 -15.54704 -15.34847 -15.09648 -14.99119 -14.74906 -14.60370 -14.46791 -14.16075 -13.92682 -13.59480 -13.41660 -13.37700 -13.26212 -13.14454 -13.10543 -12.98254 -12.93780 -12.89696 -12.79923 -12.63323 -12.61239 -12.52167 -12.25912 -12.10179 -12.02588 -11.64151 -11.45360 -11.41508 -11.31847 -11.24589 -11.06478 -10.81175 -9.80776 -9.46860 -8.35814 -6.39078 0.66875 1.22938 1.32749 1.40330 1.55155 1.61769 2.18310 2.25384 2.73223 2.98537 3.00224 3.42773 3.70725 3.74072 3.77637 3.80650 3.90982 4.05148 4.10247 4.19305 4.33846 4.40094 4.46333 4.52328 4.55764 4.56124 4.58602 4.71756 4.72630 4.73974 4.78466 4.79723 4.82101 4.84529 4.91441 4.97654 5.02067 5.02746 5.07350 5.08962 5.24008 5.25317 5.30133 5.30700 5.40533 5.42899 5.44624 5.65712 6.17250 6.48219 6.60635 6.65344 7.10479 7.16086 7.29441 8.79749 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014551 B = 0.003481 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.789440 B = 8041.942172 C = 9059.405454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.234 3.766 3 H 0.027 0.973 4 C -0.518 4.518 5 H 0.055 0.945 6 C 0.029 3.971 7 N -0.934 5.934 8 Si 0.932 3.068 9 H -0.255 1.255 10 H -0.294 1.294 11 H -0.270 1.270 12 N -0.585 5.585 13 C 0.077 3.923 14 C 0.504 3.496 15 O -0.585 6.585 16 C 0.135 3.865 17 H 0.125 0.875 18 N -0.616 5.616 19 C 0.678 3.322 20 O -0.591 6.591 21 O -0.363 6.363 22 C 0.121 3.879 23 C -0.176 4.176 24 C -0.133 4.133 25 C -0.182 4.182 26 C 0.109 3.891 27 C -0.059 4.059 28 C -0.115 4.115 29 C -0.137 4.137 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.098 0.902 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.109 0.891 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.058 0.942 51 H 0.031 0.969 52 H 0.097 0.903 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.787 -1.054 24.697 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.130 3.870 3 H 0.045 0.955 4 C -0.557 4.557 5 H 0.073 0.927 6 C -0.170 4.170 7 N -0.574 5.574 8 Si 0.760 3.240 9 H -0.181 1.181 10 H -0.222 1.222 11 H -0.195 1.195 12 N -0.315 5.315 13 C -0.065 4.065 14 C 0.290 3.710 15 O -0.466 6.466 16 C 0.029 3.971 17 H 0.142 0.858 18 N -0.356 5.356 19 C 0.435 3.565 20 O -0.483 6.483 21 O -0.278 6.278 22 C 0.085 3.915 23 C -0.233 4.233 24 C -0.190 4.190 25 C -0.239 4.239 26 C -0.013 4.013 27 C -0.060 4.060 28 C -0.172 4.172 29 C -0.195 4.195 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.127 0.873 48 H 0.099 0.901 49 H 0.112 0.888 50 H 0.077 0.923 51 H 0.050 0.950 52 H 0.116 0.884 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.461 -0.387 24.705 25.107 hybrid contribution -0.896 1.077 -1.180 1.832 sum 3.565 0.690 23.525 23.803 Atomic orbital electron populations 1.22349 0.96973 1.02496 0.99567 1.18970 0.91445 0.93334 0.83236 0.95534 1.21277 1.31626 1.13152 0.89601 0.92698 1.25514 0.97016 0.98986 0.95508 1.69969 1.46955 1.41942 0.98516 0.86115 0.80188 0.80749 0.76916 1.18060 1.22152 1.19499 1.47874 1.48461 1.13495 1.21670 1.21973 1.02388 0.80035 1.02125 1.20916 0.78199 0.86212 0.85646 1.90622 1.56431 1.21086 1.78439 1.22757 1.01970 0.89398 0.82986 0.85791 1.48041 1.14343 1.47386 1.25818 1.17443 0.82292 0.77262 0.79496 1.90878 1.15202 1.66664 1.75507 1.86328 1.44179 1.56020 1.41266 1.22535 0.91463 0.93515 0.84025 1.22448 1.02235 0.98638 0.99963 1.21875 0.99974 0.98019 0.99083 1.22494 0.98701 1.00094 1.02635 1.23469 0.82958 0.96628 0.98209 1.22243 0.89425 0.95999 0.98369 1.21549 1.04121 0.95432 0.96119 1.21711 1.02925 1.01716 0.93126 0.93851 0.90556 0.93472 0.92245 0.91624 0.89249 0.90275 0.91255 0.88720 0.92229 0.91821 0.87490 0.90581 0.92752 0.88331 0.92959 0.90701 0.87275 0.90121 0.88805 0.92305 0.95021 0.88426 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.70 8.66 71.98 0.62 -6.07 16 2 C 0.23 11.37 2.22 44.24 0.10 11.46 16 3 H 0.03 1.49 5.97 -2.39 -0.01 1.47 16 4 C -0.52 -28.58 8.95 25.60 0.23 -28.35 16 5 H 0.05 3.24 7.89 -2.91 -0.02 3.22 16 6 C 0.03 1.65 5.45 84.66 0.46 2.11 16 7 N -0.93 -56.46 13.96 21.45 0.30 -56.17 16 8 Si 0.93 45.48 24.37 68.60 1.67 47.16 16 9 H -0.26 -11.48 6.87 99.48 0.68 -10.80 16 10 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 11 H -0.27 -13.30 6.53 99.48 0.65 -12.65 16 12 N -0.58 -23.84 2.75 -826.78 -2.28 -26.12 16 13 C 0.08 2.35 9.44 127.77 1.21 3.55 16 14 C 0.50 20.34 5.43 87.66 0.48 20.81 16 15 O -0.58 -28.57 14.41 -3.04 -0.04 -28.62 16 16 C 0.14 4.09 3.61 41.05 0.15 4.24 16 17 H 0.12 3.28 6.02 -2.39 -0.01 3.27 16 18 N -0.62 -19.20 3.14 -967.35 -3.04 -22.24 16 19 C 0.68 22.65 8.26 129.79 1.07 23.72 16 20 O -0.59 -22.09 12.66 19.79 0.25 -21.83 16 21 O -0.36 -10.46 9.91 -55.49 -0.55 -11.01 16 22 C 0.12 2.67 1.13 -10.79 -0.01 2.66 16 23 C -0.18 -3.46 8.37 71.98 0.60 -2.86 16 24 C -0.13 -1.91 8.85 71.98 0.64 -1.27 16 25 C -0.18 -4.38 8.37 71.98 0.60 -3.78 16 26 C 0.11 2.87 7.29 83.25 0.61 3.47 16 27 C -0.06 -1.34 1.50 -51.78 -0.08 -1.41 16 28 C -0.12 -1.69 9.23 71.98 0.66 -1.03 16 29 C -0.14 -3.39 8.57 71.98 0.62 -2.77 16 30 H 0.04 1.92 3.27 -2.39 -0.01 1.91 16 31 H 0.08 2.95 6.67 -2.38 -0.02 2.94 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 34 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.09 2.10 5.96 -2.39 -0.01 2.09 16 36 H 0.08 2.44 6.44 -2.39 -0.02 2.42 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.05 1.70 5.88 -2.38 -0.01 1.68 16 44 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 45 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.07 2.40 6.77 -2.39 -0.02 2.39 16 47 H 0.11 2.18 8.12 -2.39 -0.02 2.16 16 48 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.06 0.92 7.92 -2.39 -0.02 0.90 16 51 H 0.03 1.04 6.93 -2.39 -0.02 1.03 16 52 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 53 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -77.40 404.92 5.08 -72.32 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.81 Total: 22.02 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 7.96 Total: 24.49 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -5.02 Total: -104.52 kcal Atomic # 8 Polarization: -61.11 SS G_CDS: -0.34 Total: -61.46 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.67 Total: 47.16 kcal Total: -77.40 5.08 -72.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793418445.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.197 kcal (2) G-P(sol) polarization free energy of solvation -77.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds