Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47112 * 2 1 4 4 C 1.53001 * 109.47345 * 239.99755 * 2 1 3 5 5 C 1.50694 * 109.47168 * 175.00037 * 4 2 1 6 6 O 1.21283 * 120.00363 * 359.97438 * 5 4 2 7 7 N 1.34784 * 119.99988 * 179.97438 * 5 4 2 8 8 C 1.46923 * 120.62964 * 359.97438 * 7 5 4 9 9 C 1.53194 * 108.77322 * 126.36706 * 8 7 5 10 10 C 1.53041 * 109.30970 * 54.64020 * 9 8 7 11 11 C 1.53039 * 109.53647 * 298.63046 * 10 9 8 12 12 H 1.09003 * 109.49942 * 301.38469 * 11 10 9 13 13 C 1.50702 * 109.49872 * 181.31678 * 11 10 9 14 14 H 1.08001 * 120.00185 * 240.00098 * 13 11 10 15 15 C 1.37880 * 119.99507 * 60.00230 * 13 11 10 16 16 N 1.31505 * 120.00195 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 119.99573 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47192 * 90.00137 * 17 15 13 19 19 H 1.48504 * 109.47031 * 209.99968 * 17 15 13 20 20 H 1.48501 * 109.47287 * 329.99746 * 17 15 13 21 21 C 1.46927 * 120.62995 * 179.71961 * 7 5 4 22 22 N 1.46495 * 109.46895 * 119.99453 * 2 1 3 23 23 C 1.34777 * 120.00585 * 274.99849 * 22 2 1 24 24 O 1.21514 * 119.99257 * 0.02562 * 23 22 2 25 25 O 1.34630 * 120.00322 * 180.02562 * 23 22 2 26 26 C 1.45208 * 116.99838 * 180.02562 * 25 23 22 27 27 C 1.52998 * 109.47151 * 60.00000 * 26 25 23 28 28 C 1.53001 * 109.46726 * 179.97438 * 26 25 23 29 29 C 1.53002 * 109.46826 * 299.99537 * 26 25 23 30 30 H 1.08995 * 109.47237 * 300.00316 * 1 2 3 31 31 H 1.09002 * 109.46567 * 60.00340 * 1 2 3 32 32 H 1.09001 * 109.47112 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.46837 * 55.00059 * 4 2 1 34 34 H 1.09002 * 109.46926 * 294.99862 * 4 2 1 35 35 H 1.08998 * 109.59009 * 246.15627 * 8 7 5 36 36 H 1.09003 * 109.58381 * 6.44334 * 8 7 5 37 37 H 1.08996 * 109.49478 * 174.58662 * 9 8 7 38 38 H 1.08997 * 109.50060 * 294.68386 * 9 8 7 39 39 H 1.09000 * 109.46215 * 58.64833 * 10 9 8 40 40 H 1.08998 * 109.46247 * 178.62615 * 10 9 8 41 41 H 0.97007 * 120.00189 * 180.02562 * 16 15 13 42 42 H 1.09003 * 109.58790 * 353.42296 * 21 7 5 43 43 H 1.09007 * 109.58432 * 113.84106 * 21 7 5 44 44 H 0.97009 * 119.99806 * 95.00482 * 22 2 1 45 45 H 1.09001 * 109.47189 * 59.99808 * 27 26 25 46 46 H 1.08996 * 109.46690 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47056 * 299.99861 * 27 26 25 48 48 H 1.09000 * 109.47196 * 59.99924 * 28 26 25 49 49 H 1.09005 * 109.46838 * 179.97438 * 28 26 25 50 50 H 1.09001 * 109.47301 * 300.00001 * 28 26 25 51 51 H 1.09001 * 109.47038 * 60.00349 * 29 26 25 52 52 H 1.08999 * 109.46583 * 179.97438 * 29 26 25 53 53 H 1.09000 * 109.47378 * 300.00248 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 8 4.1450 -0.0204 -0.4445 7 7 4.2150 -1.1806 -2.3342 8 6 3.4985 -1.9046 -3.3930 9 6 3.9092 -1.3259 -4.7507 10 6 5.4335 -1.3704 -4.8796 11 6 6.0654 -0.5152 -3.7790 12 1 5.7041 0.5099 -3.8622 13 6 7.5651 -0.5335 -3.9263 14 1 8.1820 -0.9104 -3.1240 15 6 8.1495 -0.0689 -5.0855 16 7 7.3984 0.3896 -6.0626 17 14 10.0084 -0.0923 -5.2684 18 1 10.4307 -1.3838 -5.8675 19 1 10.4331 1.0247 -6.1501 20 1 10.6393 0.0638 -3.9332 21 6 5.6787 -1.0802 -2.4130 22 7 2.0183 -0.6905 1.1962 23 6 2.1470 -0.0181 2.3572 24 8 1.8576 1.1608 2.4117 25 8 2.5962 -0.6526 3.4563 26 6 2.7091 0.1340 4.6717 27 6 1.3342 0.6882 5.0500 28 6 3.2312 -0.7511 5.8053 29 6 3.6804 1.2933 4.4404 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6055 -0.2618 -2.1369 34 1 1.7517 -1.7716 -1.2055 35 1 3.7586 -2.9624 -3.3529 36 1 2.4239 -1.7870 -3.2533 37 1 3.4592 -1.9163 -5.5489 38 1 3.5678 -0.2934 -4.8244 39 1 5.7764 -2.4004 -4.7810 40 1 5.7270 -0.9817 -5.8548 41 1 7.8095 0.7161 -6.8783 42 1 6.0423 -0.4168 -1.6283 43 1 6.1199 -2.0695 -2.2914 44 1 2.2490 -1.6317 1.1527 45 1 0.6422 -0.1377 5.2147 46 1 1.4190 1.2791 5.9620 47 1 0.9618 1.3186 4.2425 48 1 4.2107 -1.1463 5.5360 49 1 3.3164 -0.1605 6.7175 50 1 2.5390 -1.5768 5.9699 51 1 3.3081 1.9237 3.6329 52 1 3.7648 1.8840 5.3526 53 1 4.6600 0.8984 4.1709 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254646.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -156.125772 kcal Electronic energy + Delta-G solvation = -31261.939597 eV Core-core repulsion = 27132.207216 eV Total energy + Delta-G solvation = -4129.732380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.83393 -41.08897 -38.96425 -38.13986 -36.48913 -35.37749 -35.07300 -33.13953 -32.44403 -31.81412 -29.12307 -28.36776 -28.28857 -26.96838 -25.89170 -24.30330 -23.31418 -22.20087 -21.39857 -21.01916 -19.76562 -19.19472 -18.55547 -17.89057 -17.70242 -17.09302 -16.80752 -16.74580 -16.46741 -15.85298 -15.51748 -15.34475 -15.10827 -14.97097 -14.65631 -14.48460 -14.39246 -13.97087 -13.79199 -13.62399 -13.55873 -13.31891 -13.08857 -12.95000 -12.89850 -12.85570 -12.85312 -12.83869 -12.70218 -12.59920 -12.46303 -12.26025 -12.04684 -11.84954 -11.81020 -11.58083 -11.36043 -11.24668 -11.05282 -10.86549 -10.65543 -10.42715 -10.12377 -9.43771 -8.12630 -6.27788 1.25220 1.38232 1.39782 1.49653 1.73384 1.89154 2.15538 2.42216 3.13683 3.21494 3.57257 3.64500 3.76548 3.80747 3.95535 4.13605 4.21270 4.29962 4.32477 4.42738 4.53096 4.56554 4.60326 4.61514 4.66774 4.68196 4.73161 4.75615 4.82085 4.84194 4.87146 4.87739 4.91044 5.01716 5.06161 5.11834 5.14803 5.28262 5.30774 5.31649 5.34882 5.45863 5.49737 5.59746 5.61122 5.65599 5.93521 6.14959 6.34157 6.47022 6.64580 6.82251 7.30941 7.40423 7.44076 8.90763 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014596 B = 0.002579 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.908786 B =10855.494844 C =12200.838017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.174 3.826 3 H 0.057 0.943 4 C -0.137 4.137 5 C 0.496 3.504 6 O -0.591 6.591 7 N -0.608 5.608 8 C 0.109 3.891 9 C -0.129 4.129 10 C -0.107 4.107 11 C 0.041 3.959 12 H -0.017 1.017 13 C -0.539 4.539 14 H 0.049 0.951 15 C 0.017 3.983 16 N -0.912 5.912 17 Si 0.953 3.047 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.133 3.867 22 N -0.688 5.688 23 C 0.649 3.351 24 O -0.597 6.597 25 O -0.375 6.375 26 C 0.124 3.876 27 C -0.175 4.175 28 C -0.135 4.135 29 C -0.181 4.181 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.036 0.964 40 H 0.060 0.940 41 H 0.262 0.738 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.410 0.590 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.103 0.897 50 H 0.075 0.925 51 H 0.056 0.944 52 H 0.093 0.907 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.162 -7.531 15.238 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.176 4.176 5 C 0.286 3.714 6 O -0.471 6.471 7 N -0.340 5.340 8 C -0.012 4.012 9 C -0.167 4.167 10 C -0.145 4.145 11 C 0.022 3.978 12 H 0.001 0.999 13 C -0.578 4.578 14 H 0.067 0.933 15 C -0.182 4.182 16 N -0.551 5.551 17 Si 0.779 3.221 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.199 1.199 21 C 0.010 3.990 22 N -0.347 5.347 23 C 0.402 3.598 24 O -0.488 6.488 25 O -0.290 6.290 26 C 0.088 3.912 27 C -0.232 4.232 28 C -0.192 4.192 29 C -0.238 4.238 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.245 0.755 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.122 0.878 50 H 0.094 0.906 51 H 0.075 0.925 52 H 0.112 0.888 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.961 -6.573 15.608 24.686 hybrid contribution 1.892 0.296 -0.522 1.985 sum -16.069 -6.277 15.086 22.917 Atomic orbital electron populations 1.22138 0.91878 1.04000 1.03061 1.20720 0.95093 0.95976 0.81187 0.92450 1.22167 0.89289 1.06074 1.00088 1.21473 0.91726 0.77636 0.80594 1.90711 1.71583 1.44307 1.40531 1.48393 1.07273 1.53936 1.24413 1.22037 0.97919 0.96003 0.85289 1.21918 0.96314 1.00734 0.97704 1.21428 0.93911 0.97857 1.01344 1.18795 0.94323 0.93471 0.91213 0.99860 1.21453 0.92859 1.42161 1.01316 0.93268 1.25673 1.02330 0.94604 0.95587 1.70000 1.36314 1.42504 1.06317 0.85631 0.80590 0.77982 0.77920 1.19483 1.20875 1.19874 1.21360 0.79550 0.99651 0.98450 1.44665 1.69047 1.14185 1.06785 1.18224 0.76306 0.83578 0.81672 1.90854 1.56748 1.15849 1.85396 1.86291 1.79359 1.44343 1.18960 1.22392 0.96805 0.91233 0.80802 1.22431 0.95219 1.02162 1.03357 1.21878 1.01789 1.00009 0.95474 1.22473 0.98594 0.98766 1.03980 0.93634 0.89132 0.89637 0.84150 0.84064 0.90003 0.85842 0.89132 0.93651 0.94509 0.92152 0.92917 0.93667 0.92391 0.75465 0.91369 0.89087 0.92059 0.91979 0.87813 0.90599 0.92490 0.88804 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.48 71.98 0.68 -1.65 16 2 C 0.17 3.91 2.13 44.99 0.10 4.00 16 3 H 0.06 1.80 7.39 -2.39 -0.02 1.78 16 4 C -0.14 -2.51 3.59 29.85 0.11 -2.40 16 5 C 0.50 15.94 7.56 87.65 0.66 16.60 16 6 O -0.59 -25.27 14.77 -3.04 -0.04 -25.31 16 7 N -0.61 -20.37 2.98 -819.65 -2.44 -22.81 16 8 C 0.11 2.63 6.34 86.36 0.55 3.18 16 9 C -0.13 -4.03 6.08 30.67 0.19 -3.84 16 10 C -0.11 -4.72 4.96 30.62 0.15 -4.57 16 11 C 0.04 2.08 2.24 -11.59 -0.03 2.05 16 12 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 13 C -0.54 -30.28 8.56 25.60 0.22 -30.06 16 14 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 15 C 0.02 0.96 5.30 84.66 0.45 1.41 16 16 N -0.91 -52.49 11.31 21.45 0.24 -52.24 16 17 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 C 0.13 5.82 5.63 86.23 0.49 6.30 16 22 N -0.69 -17.15 4.22 -570.14 -2.41 -19.55 16 23 C 0.65 19.72 8.02 129.79 1.04 20.76 16 24 O -0.60 -21.01 11.54 19.80 0.23 -20.78 16 25 O -0.37 -10.35 9.94 -55.40 -0.55 -10.90 16 26 C 0.12 2.78 1.13 -10.79 -0.01 2.77 16 27 C -0.17 -3.46 8.37 71.98 0.60 -2.86 16 28 C -0.13 -2.05 8.85 71.98 0.64 -1.42 16 29 C -0.18 -4.54 8.37 71.98 0.60 -3.94 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.14 1.86 7.70 -2.39 -0.02 1.84 16 34 H 0.14 1.43 7.94 -2.39 -0.02 1.41 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.12 1.75 5.93 -2.39 -0.01 1.74 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 3.09 6.04 -2.39 -0.01 3.08 16 41 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 42 H 0.04 2.24 7.01 -2.39 -0.02 2.22 16 43 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 44 H 0.41 8.48 8.71 -92.70 -0.81 7.67 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 50 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 1.82 5.88 -2.39 -0.01 1.81 16 52 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 53 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -78.78 411.06 3.57 -75.21 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.08 Total: 23.94 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.43 Total: 6.34 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -4.61 Total: -94.61 kcal Atomic # 8 Polarization: -56.63 SS G_CDS: -0.37 Total: -56.99 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -78.78 3.57 -75.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254646.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.914 kcal (2) G-P(sol) polarization free energy of solvation -78.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds