Wall clock time and date at job start Sat Apr 11 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46666 * 2 1 4 4 C 1.52998 * 109.46620 * 240.00511 * 2 1 3 5 5 C 1.50697 * 109.46984 * 174.99616 * 4 2 1 6 6 O 1.21288 * 119.99933 * 359.97438 * 5 4 2 7 7 N 1.34780 * 120.00489 * 179.97438 * 5 4 2 8 8 C 1.46957 * 120.64915 * 359.81927 * 7 5 4 9 9 C 1.53197 * 108.89063 * 233.53185 * 8 7 5 10 10 C 1.53040 * 109.31110 * 305.44560 * 9 8 7 11 11 C 1.53044 * 109.53662 * 61.36306 * 10 9 8 12 12 H 1.08997 * 109.49691 * 58.58900 * 11 10 9 13 13 C 1.50702 * 109.52456 * 178.66800 * 11 10 9 14 14 H 1.08000 * 120.00459 * 119.85028 * 13 11 10 15 15 C 1.37880 * 119.99754 * 299.85489 * 13 11 10 16 16 N 1.31518 * 119.99869 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00136 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47223 * 59.99599 * 17 15 13 19 19 H 1.48503 * 109.47375 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46867 * 299.99952 * 17 15 13 21 21 C 1.46926 * 120.63278 * 180.02562 * 7 5 4 22 22 N 1.46489 * 109.47453 * 120.00350 * 2 1 3 23 23 C 1.34781 * 119.99827 * 274.99964 * 22 2 1 24 24 O 1.21504 * 120.00319 * 0.02562 * 23 22 2 25 25 O 1.34637 * 119.99670 * 179.97438 * 23 22 2 26 26 C 1.45207 * 117.00064 * 179.97438 * 25 23 22 27 27 C 1.52996 * 109.46607 * 59.99951 * 26 25 23 28 28 C 1.52994 * 109.47337 * 180.02562 * 26 25 23 29 29 C 1.53002 * 109.46952 * 300.00601 * 26 25 23 30 30 H 1.08994 * 109.47334 * 59.99490 * 1 2 3 31 31 H 1.09002 * 109.46666 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46797 * 299.99167 * 1 2 3 33 33 H 1.09004 * 109.47475 * 54.99729 * 4 2 1 34 34 H 1.08997 * 109.47297 * 294.99215 * 4 2 1 35 35 H 1.09001 * 109.46843 * 113.75181 * 8 7 5 36 36 H 1.08998 * 109.59977 * 353.39397 * 8 7 5 37 37 H 1.08995 * 109.50005 * 185.49506 * 9 8 7 38 38 H 1.08996 * 109.49270 * 65.39471 * 9 8 7 39 39 H 1.08994 * 109.45892 * 301.34445 * 10 9 8 40 40 H 1.09001 * 109.45142 * 181.37673 * 10 9 8 41 41 H 0.97002 * 119.99523 * 179.97438 * 16 15 13 42 42 H 1.09002 * 109.58861 * 6.60537 * 21 7 5 43 43 H 1.08996 * 109.58519 * 246.32428 * 21 7 5 44 44 H 0.97003 * 120.00130 * 94.99660 * 22 2 1 45 45 H 1.09000 * 109.47439 * 60.00410 * 27 26 25 46 46 H 1.09003 * 109.46849 * 179.97438 * 27 26 25 47 47 H 1.08998 * 109.47677 * 299.99990 * 27 26 25 48 48 H 1.08998 * 109.47366 * 59.99954 * 28 26 25 49 49 H 1.09003 * 109.47255 * 180.02562 * 28 26 25 50 50 H 1.08998 * 109.47306 * 300.00191 * 28 26 25 51 51 H 1.08993 * 109.47657 * 59.99494 * 29 26 25 52 52 H 1.09003 * 109.46791 * 179.97438 * 29 26 25 53 53 H 1.08998 * 109.46722 * 299.99416 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5418 -0.6148 -1.3129 6 8 4.1450 -0.0202 -0.4447 7 7 4.2149 -1.1803 -2.3346 8 6 3.4990 -1.9074 -3.3921 9 6 4.1052 -3.3076 -3.5290 10 6 5.6131 -3.1859 -3.7600 11 6 6.2608 -2.4945 -2.5581 12 1 6.0569 -3.0689 -1.6545 13 6 7.7500 -2.4041 -2.7713 14 1 8.2340 -1.4390 -2.7988 15 6 8.4945 -3.5535 -2.9313 16 7 7.9051 -4.7288 -2.8973 17 14 10.3404 -3.4417 -3.1948 18 1 10.9669 -2.7678 -2.0292 19 1 10.9038 -4.8082 -3.3375 20 1 10.6180 -2.6600 -4.4266 21 6 5.6792 -1.0855 -2.4100 22 7 2.0185 -0.6906 1.1960 23 6 2.1472 -0.0183 2.3570 24 8 1.8578 1.1605 2.4118 25 8 2.5956 -0.6532 3.4564 26 6 2.7097 0.1335 4.6715 27 6 1.3355 0.6898 5.0497 28 6 3.2317 -0.7516 5.8050 29 6 3.6824 1.2915 4.4399 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6053 -0.2616 -2.1370 34 1 1.7517 -1.7714 -1.2057 35 1 3.6018 -1.3709 -4.3354 36 1 2.4443 -1.9899 -3.1295 37 1 3.6478 -3.8209 -4.3748 38 1 3.9215 -3.8743 -2.6162 39 1 5.7964 -2.5980 -4.6593 40 1 6.0430 -4.1801 -3.8822 41 1 8.4289 -5.5374 -3.0102 42 1 6.0630 -0.6257 -1.4992 43 1 5.9623 -0.4811 -3.2717 44 1 2.2491 -1.6318 1.1524 45 1 0.6424 -0.1352 5.2147 46 1 1.4210 1.2799 5.9621 47 1 0.9639 1.3205 4.2421 48 1 4.2108 -1.1476 5.5353 49 1 3.3169 -0.1612 6.7173 50 1 2.5390 -1.5768 5.9701 51 1 3.3110 1.9222 3.6323 52 1 3.7677 1.8823 5.3520 53 1 4.6614 0.8952 4.1705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855254647.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:51 Heat of formation + Delta-G solvation = -155.983977 kcal Electronic energy + Delta-G solvation = -31423.519846 eV Core-core repulsion = 27293.793614 eV Total energy + Delta-G solvation = -4129.726231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.83664 -41.08225 -38.95731 -38.13578 -36.48213 -35.36844 -35.07801 -33.13877 -32.43660 -31.80124 -29.11734 -28.36913 -28.29976 -26.96117 -25.88765 -24.29979 -23.31075 -22.21242 -21.34575 -21.04438 -19.78917 -19.15911 -18.55006 -17.88990 -17.72746 -17.09930 -16.86835 -16.60013 -16.55572 -15.81486 -15.51434 -15.35453 -15.07673 -14.96374 -14.69915 -14.50001 -14.39597 -13.89047 -13.84870 -13.60186 -13.56046 -13.33037 -13.08638 -12.96149 -12.90282 -12.88829 -12.85846 -12.79898 -12.68454 -12.60460 -12.46769 -12.26244 -12.06362 -11.83807 -11.79692 -11.57554 -11.36379 -11.24511 -11.05506 -10.86070 -10.65227 -10.42432 -10.12703 -9.43530 -8.12146 -6.27067 1.26180 1.39395 1.40843 1.48171 1.73920 1.88378 2.15234 2.42634 3.14215 3.20709 3.57433 3.65291 3.75861 3.80285 3.94972 4.11900 4.22355 4.31243 4.32599 4.44451 4.51793 4.56714 4.59168 4.60968 4.67043 4.68751 4.72140 4.74991 4.81884 4.83823 4.86608 4.87150 4.91212 5.01484 5.06142 5.11115 5.14687 5.27665 5.30593 5.31790 5.35499 5.46100 5.49981 5.60000 5.61268 5.65079 5.94088 6.14838 6.34752 6.44678 6.64623 6.82481 7.31068 7.40921 7.42341 8.91044 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.002880 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.611345 B = 9718.501926 C =11318.847430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.174 3.826 3 H 0.064 0.936 4 C -0.137 4.137 5 C 0.496 3.504 6 O -0.591 6.591 7 N -0.608 5.608 8 C 0.109 3.891 9 C -0.128 4.128 10 C -0.107 4.107 11 C 0.044 3.956 12 H -0.014 1.014 13 C -0.542 4.542 14 H 0.048 0.952 15 C 0.019 3.981 16 N -0.911 5.911 17 Si 0.952 3.048 18 H -0.278 1.278 19 H -0.281 1.281 20 H -0.268 1.268 21 C 0.132 3.868 22 N -0.692 5.692 23 C 0.650 3.350 24 O -0.595 6.595 25 O -0.378 6.378 26 C 0.123 3.877 27 C -0.173 4.173 28 C -0.136 4.136 29 C -0.180 4.180 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.151 0.849 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.060 0.940 41 H 0.262 0.738 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.407 0.593 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.105 0.895 50 H 0.073 0.927 51 H 0.059 0.941 52 H 0.095 0.905 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.506 5.444 7.304 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.070 3.930 3 H 0.082 0.918 4 C -0.177 4.177 5 C 0.286 3.714 6 O -0.471 6.471 7 N -0.340 5.340 8 C -0.013 4.013 9 C -0.166 4.166 10 C -0.146 4.146 11 C 0.025 3.975 12 H 0.004 0.996 13 C -0.580 4.580 14 H 0.066 0.934 15 C -0.181 4.181 16 N -0.550 5.550 17 Si 0.778 3.222 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.193 1.193 21 C 0.009 3.991 22 N -0.350 5.350 23 C 0.403 3.597 24 O -0.486 6.486 25 O -0.293 6.293 26 C 0.087 3.913 27 C -0.230 4.230 28 C -0.193 4.193 29 C -0.237 4.237 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.168 0.832 34 H 0.149 0.851 35 H 0.098 0.902 36 H 0.142 0.858 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.242 0.758 45 H 0.085 0.915 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.124 0.876 50 H 0.092 0.908 51 H 0.078 0.922 52 H 0.113 0.887 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.283 6.152 7.823 21.700 hybrid contribution 2.001 -0.453 -0.087 2.053 sum -17.282 5.699 7.736 19.774 Atomic orbital electron populations 1.22143 0.91867 1.03813 1.03254 1.20770 0.95103 0.96121 0.80996 0.91779 1.22180 0.89311 1.05646 1.00526 1.21477 0.91769 0.77917 0.80261 1.90712 1.71605 1.44894 1.39926 1.48397 1.07155 1.53382 1.25091 1.22044 0.97173 0.91586 0.90480 1.21911 0.95996 0.96842 1.01823 1.21431 0.94185 1.01764 0.97187 1.18825 0.93674 0.90832 0.94160 0.99616 1.21434 0.93847 0.92636 1.50096 0.93362 1.25653 1.02540 0.95073 0.94790 1.69993 1.36857 0.97740 1.50400 0.85710 0.80505 0.77254 0.78780 1.20343 1.20584 1.19321 1.21437 0.79340 0.98585 0.99779 1.44760 1.69031 1.14172 1.07067 1.18202 0.76268 0.83598 0.81604 1.90833 1.56783 1.15593 1.85390 1.86309 1.79402 1.44481 1.19110 1.22401 0.96979 0.91229 0.80727 1.22422 0.95037 1.02128 1.03447 1.21886 1.01674 1.00072 0.95669 1.22467 0.98447 0.98693 1.04103 0.88618 0.90137 0.93626 0.83161 0.85091 0.90213 0.85814 0.89172 0.93432 0.94667 0.92121 0.92903 0.93639 0.92611 0.75806 0.91530 0.88964 0.91827 0.92264 0.87626 0.90753 0.92204 0.88663 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.48 71.98 0.68 -1.61 16 2 C 0.17 3.87 2.13 45.00 0.10 3.97 16 3 H 0.06 1.90 7.39 -2.39 -0.02 1.88 16 4 C -0.14 -2.51 3.59 29.85 0.11 -2.40 16 5 C 0.50 15.92 7.56 87.66 0.66 16.59 16 6 O -0.59 -25.24 14.77 -3.05 -0.05 -25.28 16 7 N -0.61 -20.39 2.98 -818.89 -2.44 -22.83 16 8 C 0.11 2.63 6.34 86.36 0.55 3.18 16 9 C -0.13 -3.95 6.08 30.67 0.19 -3.76 16 10 C -0.11 -4.70 4.96 30.62 0.15 -4.55 16 11 C 0.04 2.22 2.25 -11.47 -0.03 2.19 16 12 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 13 C -0.54 -30.31 8.56 25.60 0.22 -30.09 16 14 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 15 C 0.02 1.04 5.30 84.65 0.45 1.49 16 16 N -0.91 -51.98 11.32 21.45 0.24 -51.74 16 17 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 C 0.13 5.77 5.65 86.35 0.49 6.25 16 22 N -0.69 -18.54 4.22 -570.14 -2.41 -20.94 16 23 C 0.65 20.63 8.02 129.79 1.04 21.67 16 24 O -0.59 -20.95 11.54 19.83 0.23 -20.72 16 25 O -0.38 -11.33 9.94 -55.46 -0.55 -11.88 16 26 C 0.12 2.96 1.13 -10.80 -0.01 2.95 16 27 C -0.17 -3.59 8.37 71.98 0.60 -2.99 16 28 C -0.14 -2.39 8.85 71.98 0.64 -1.75 16 29 C -0.18 -4.68 8.37 71.98 0.60 -4.07 16 30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.15 1.61 7.95 -2.38 -0.02 1.59 16 34 H 0.13 1.66 7.68 -2.39 -0.02 1.64 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.12 1.75 5.94 -2.39 -0.01 1.74 16 37 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 3.08 6.05 -2.39 -0.01 3.07 16 41 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 42 H 0.04 2.25 7.01 -2.39 -0.02 2.23 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.41 9.93 8.71 -92.71 -0.81 9.12 16 45 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.06 1.66 5.88 -2.39 -0.01 1.65 16 48 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.06 1.92 5.88 -2.39 -0.01 1.90 16 52 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 53 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -77.70 411.12 3.57 -74.13 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.08 Total: 26.28 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 6.44 Total: 7.06 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -4.61 Total: -95.51 kcal Atomic # 8 Polarization: -57.52 SS G_CDS: -0.37 Total: -57.89 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -77.70 3.57 -74.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855254647.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.854 kcal (2) G-P(sol) polarization free energy of solvation -77.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds