Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.34776 * 120.00388 * 275.00617 * 12 2 1 14 14 O 1.21281 * 119.99842 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00287 * 180.02562 * 13 12 2 16 16 C 1.53003 * 109.47272 * 179.97438 * 15 13 12 17 17 N 1.46501 * 109.47102 * 180.02562 * 16 15 13 18 18 C 1.46501 * 119.99561 * 270.00289 * 17 16 15 19 19 C 1.52999 * 109.47614 * 90.00186 * 18 17 16 20 20 C 1.53002 * 117.49640 * 243.62099 * 19 18 17 21 21 C 1.53000 * 117.49994 * 174.99790 * 19 18 17 22 22 C 1.34773 * 120.00346 * 89.99993 * 17 16 15 23 23 O 1.21513 * 119.99645 * 359.97438 * 22 17 16 24 24 O 1.34635 * 120.00121 * 179.97438 * 22 17 16 25 25 C 1.45199 * 116.99732 * 180.02562 * 24 22 17 26 26 C 1.52998 * 109.47615 * 59.99986 * 25 24 22 27 27 C 1.53005 * 109.46871 * 179.97438 * 25 24 22 28 28 C 1.53006 * 109.47274 * 299.99657 * 25 24 22 29 29 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 31 31 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 32 32 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 33 33 H 0.97008 * 120.00075 * 94.99858 * 12 2 1 34 34 H 1.09000 * 109.47224 * 299.99957 * 15 13 12 35 35 H 1.09007 * 109.47091 * 59.99436 * 15 13 12 36 36 H 1.09000 * 109.46645 * 300.00030 * 16 15 13 37 37 H 1.08997 * 109.46657 * 59.99905 * 16 15 13 38 38 H 1.09002 * 109.46578 * 210.00215 * 18 17 16 39 39 H 1.09000 * 109.47342 * 329.99522 * 18 17 16 40 40 H 1.09006 * 115.54581 * 29.32269 * 19 18 17 41 41 H 1.08994 * 117.49717 * 359.97438 * 20 19 18 42 42 H 1.09005 * 117.49365 * 145.01679 * 20 19 18 43 43 H 1.08999 * 117.49355 * 214.97749 * 21 19 18 44 44 H 1.08993 * 117.50023 * 359.97438 * 21 19 18 45 45 H 1.09006 * 109.46992 * 59.99597 * 26 25 24 46 46 H 1.08990 * 109.47480 * 179.97438 * 26 25 24 47 47 H 1.09004 * 109.46721 * 300.00186 * 26 25 24 48 48 H 1.09007 * 109.47075 * 60.00111 * 27 25 24 49 49 H 1.09002 * 109.46868 * 179.97438 * 27 25 24 50 50 H 1.08992 * 109.47129 * 300.00023 * 27 25 24 51 51 H 1.08996 * 109.46518 * 60.00042 * 28 25 24 52 52 H 1.08997 * 109.46907 * 180.02562 * 28 25 24 53 53 H 1.09000 * 109.46785 * 300.00440 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8590 1.1585 2.4116 15 6 2.6500 -0.7286 3.5874 16 6 2.7018 0.2545 4.7586 17 7 3.1913 -0.4359 5.9545 18 6 2.2447 -1.0880 6.8627 19 6 2.0337 -2.5386 6.4241 20 6 0.6299 -2.9417 5.9684 21 6 1.1654 -3.4274 7.3168 22 6 4.5123 -0.4711 6.2190 23 8 5.2974 0.0694 5.4654 24 8 4.9620 -1.1052 7.3183 25 6 6.3970 -1.1023 7.5401 26 6 6.8908 0.3402 7.6667 27 6 6.7154 -1.8647 8.8280 28 6 7.0969 -1.7793 6.3599 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.9111 -0.5221 -4.4375 33 1 2.2491 -1.6318 1.1526 34 1 1.9778 -1.5510 3.8324 35 1 3.6494 -1.1204 3.3978 36 1 3.3742 1.0766 4.5133 37 1 1.7026 0.6465 4.9483 38 1 2.6430 -1.0695 7.8771 39 1 1.2924 -0.5584 6.8366 40 1 2.8802 -3.0051 5.9201 41 1 -0.1434 -2.1737 5.9814 42 1 0.5526 -3.6736 5.1643 43 1 1.4405 -4.4788 7.3999 44 1 0.7448 -2.9789 8.2168 45 1 6.3921 0.8225 8.5076 46 1 7.9678 0.3423 7.8337 47 1 6.6638 0.8837 6.7495 48 1 6.3636 -2.8925 8.7382 49 1 7.7927 -1.8630 8.9943 50 1 6.2169 -1.3821 9.6685 51 1 6.8699 -1.2358 5.4427 52 1 8.1740 -1.7775 6.5267 53 1 6.7451 -2.8070 6.2698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865052125.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -116.325157 kcal Electronic energy + Delta-G solvation = -31097.846347 eV Core-core repulsion = 26969.839851 eV Total energy + Delta-G solvation = -4128.006496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94287 -40.71184 -39.19323 -37.98992 -36.91982 -36.16820 -34.95038 -34.40919 -32.74166 -31.22635 -28.34694 -28.28295 -28.00965 -27.23203 -25.95881 -23.26885 -23.15228 -22.18582 -21.81675 -21.16901 -20.32381 -19.17928 -18.88876 -18.00781 -17.60471 -17.30966 -17.18887 -16.52026 -16.43624 -16.05905 -15.86309 -15.49131 -15.22277 -15.04980 -14.90523 -14.69317 -14.38001 -14.12716 -14.09480 -13.70103 -13.65025 -13.56916 -13.29165 -13.14254 -13.05583 -12.85564 -12.82903 -12.78556 -12.53066 -12.43187 -12.28626 -12.25119 -12.15467 -12.11454 -11.62178 -11.35877 -11.33341 -11.28344 -11.05176 -10.89389 -10.85095 -10.72119 -9.88552 -9.87446 -8.39035 -6.45159 1.07405 1.26612 1.35333 1.44969 1.73904 1.74250 2.25696 2.45059 2.80549 2.97201 3.00393 3.77370 3.79858 3.82120 3.86434 3.93334 3.98130 4.01191 4.08145 4.19458 4.35543 4.45821 4.50165 4.51828 4.53767 4.60769 4.63175 4.67497 4.72343 4.78175 4.78761 4.81691 4.86888 4.88870 4.91258 4.95654 5.01158 5.11834 5.15016 5.28102 5.30526 5.32425 5.33715 5.35014 5.44064 5.46442 5.52084 5.64579 6.12348 6.29181 6.56460 6.85415 7.17871 7.28269 7.43127 8.76425 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.002622 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.028221 B =10675.467095 C =11669.412718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.240 3.760 3 H 0.021 0.979 4 C -0.535 4.535 5 H 0.054 0.946 6 C 0.027 3.973 7 N -0.935 5.935 8 Si 0.941 3.059 9 H -0.257 1.257 10 H -0.262 1.262 11 H -0.293 1.293 12 N -0.702 5.702 13 C 0.509 3.491 14 O -0.592 6.592 15 C -0.139 4.139 16 C 0.157 3.843 17 N -0.586 5.586 18 C 0.143 3.857 19 C -0.178 4.178 20 C -0.182 4.182 21 C -0.160 4.160 22 C 0.646 3.354 23 O -0.593 6.593 24 O -0.357 6.357 25 C 0.125 3.875 26 C -0.180 4.180 27 C -0.132 4.132 28 C -0.181 4.181 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.270 0.730 33 H 0.406 0.594 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.072 0.928 51 H 0.056 0.944 52 H 0.088 0.912 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 -5.667 30.504 31.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.135 3.865 3 H 0.038 0.962 4 C -0.573 4.573 5 H 0.072 0.928 6 C -0.173 4.173 7 N -0.574 5.574 8 Si 0.768 3.232 9 H -0.182 1.182 10 H -0.187 1.187 11 H -0.221 1.221 12 N -0.350 5.350 13 C 0.297 3.703 14 O -0.474 6.474 15 C -0.180 4.180 16 C 0.034 3.966 17 N -0.325 5.325 18 C 0.022 3.978 19 C -0.197 4.197 20 C -0.219 4.219 21 C -0.197 4.197 22 C 0.401 3.599 23 O -0.484 6.484 24 O -0.272 6.272 25 C 0.089 3.911 26 C -0.238 4.238 27 C -0.189 4.189 28 C -0.238 4.238 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.241 0.759 34 H 0.140 0.860 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.116 0.884 44 H 0.127 0.873 45 H 0.083 0.917 46 H 0.107 0.893 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.117 0.883 50 H 0.091 0.909 51 H 0.075 0.925 52 H 0.107 0.893 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.440 -4.704 30.171 30.632 hybrid contribution 0.010 0.158 -1.212 1.222 sum 2.449 -4.546 28.959 29.416 Atomic orbital electron populations 1.22317 0.97459 1.01770 0.99562 1.18768 0.91468 0.93050 0.83173 0.96154 1.21279 1.32315 1.13586 0.90093 0.92773 1.25591 0.96927 0.99428 0.95303 1.69983 1.46684 1.42051 0.98673 0.85972 0.79832 0.80203 0.77182 1.18214 1.18691 1.22075 1.46060 1.65363 1.14380 1.09245 1.21005 0.77081 0.86970 0.85291 1.90638 1.53058 1.17704 1.85982 1.21929 1.03705 1.00531 0.91846 1.21036 1.01025 0.92974 0.81515 1.46867 1.02884 1.56656 1.26085 1.21400 0.93315 0.90436 0.92693 1.22662 0.95086 0.96037 1.05962 1.23147 0.96069 1.04082 0.98647 1.22990 1.02318 0.99704 0.94719 1.18264 0.83659 0.77719 0.80224 1.90933 1.55308 1.50792 1.51395 1.86323 1.28615 1.70457 1.41766 1.22380 0.74423 0.96929 0.97377 1.22475 1.03033 0.95428 1.02824 1.21855 1.03499 1.00196 0.93390 1.22474 1.02035 1.00689 0.98623 0.91530 0.93171 0.94194 0.92045 0.75859 0.86004 0.89222 0.91508 0.87690 0.88553 0.88148 0.89137 0.87935 0.89048 0.88434 0.87288 0.91676 0.89316 0.92462 0.91117 0.88264 0.90894 0.92475 0.89341 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.59 8.96 71.99 0.64 -5.94 16 2 C 0.24 11.54 2.15 44.25 0.10 11.63 16 3 H 0.02 1.11 6.63 -2.39 -0.02 1.09 16 4 C -0.53 -29.64 9.31 25.60 0.24 -29.40 16 5 H 0.05 3.20 7.98 -2.91 -0.02 3.18 16 6 C 0.03 1.55 5.45 84.65 0.46 2.01 16 7 N -0.93 -56.80 13.96 21.45 0.30 -56.50 16 8 Si 0.94 45.22 24.37 68.60 1.67 46.89 16 9 H -0.26 -11.46 6.88 99.48 0.68 -10.77 16 10 H -0.26 -12.55 6.52 99.48 0.65 -11.90 16 11 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 12 N -0.70 -27.72 5.07 -446.09 -2.26 -29.98 16 13 C 0.51 18.70 7.79 87.66 0.68 19.38 16 14 O -0.59 -25.99 15.64 -3.03 -0.05 -26.04 16 15 C -0.14 -3.70 6.02 29.85 0.18 -3.52 16 16 C 0.16 4.00 4.74 86.38 0.41 4.41 16 17 N -0.59 -12.71 2.47 -952.18 -2.35 -15.06 16 18 C 0.14 2.11 5.74 86.38 0.50 2.61 16 19 C -0.18 -2.54 5.46 -10.79 -0.06 -2.60 16 20 C -0.18 -2.36 10.10 30.60 0.31 -2.05 16 21 C -0.16 -1.74 10.25 30.60 0.31 -1.42 16 22 C 0.65 16.65 7.70 129.79 1.00 17.65 16 23 O -0.59 -19.27 11.46 19.80 0.23 -19.05 16 24 O -0.36 -7.61 8.71 -55.45 -0.48 -8.10 16 25 C 0.13 2.23 1.13 -10.79 -0.01 2.22 16 26 C -0.18 -3.32 8.37 71.98 0.60 -2.72 16 27 C -0.13 -1.41 8.85 71.98 0.64 -0.77 16 28 C -0.18 -3.49 8.37 71.98 0.60 -2.88 16 29 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.04 1.76 3.28 -2.39 -0.01 1.76 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.41 14.16 8.54 -92.70 -0.79 13.37 16 34 H 0.12 2.56 7.51 -2.39 -0.02 2.54 16 35 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 36 H 0.07 2.13 7.38 -2.39 -0.02 2.11 16 37 H 0.10 2.39 7.85 -2.39 -0.02 2.37 16 38 H 0.10 1.29 7.37 -2.39 -0.02 1.27 16 39 H 0.10 1.16 7.63 -2.39 -0.02 1.15 16 40 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.10 1.22 8.03 -2.39 -0.02 1.20 16 42 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.06 1.46 5.88 -2.38 -0.01 1.44 16 48 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 49 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.06 1.51 5.88 -2.39 -0.01 1.49 16 52 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 53 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.71 418.86 3.67 -69.03 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.02 Total: 30.19 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 6.60 Total: 8.61 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -4.32 Total: -101.55 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -0.30 Total: -53.18 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.67 Total: 46.89 kcal Total: -72.71 3.67 -69.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865052125.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.291 kcal (2) G-P(sol) polarization free energy of solvation -72.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds