Wall clock time and date at job start Sat Apr 11 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47587 * 2 1 4 4 C 1.50700 * 109.46904 * 240.00256 * 2 1 3 5 5 H 1.08002 * 120.00216 * 239.99878 * 4 2 1 6 6 C 1.37874 * 120.00079 * 59.99869 * 4 2 1 7 7 N 1.31518 * 120.00374 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99889 * 0.02562 * 6 4 2 9 9 H 1.48507 * 109.46602 * 269.99486 * 8 6 4 10 10 H 1.48496 * 109.47135 * 29.99558 * 8 6 4 11 11 H 1.48500 * 109.47259 * 150.00048 * 8 6 4 12 12 N 1.46503 * 109.47291 * 120.00414 * 2 1 3 13 13 C 1.34768 * 119.99821 * 274.99985 * 12 2 1 14 14 O 1.21285 * 120.00553 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99941 * 180.02562 * 13 12 2 16 16 H 1.09006 * 112.84975 * 273.31053 * 15 13 12 17 17 C 1.53775 * 113.61778 * 44.50374 * 15 13 12 18 18 C 1.53778 * 87.08401 * 139.98259 * 17 15 13 19 19 H 1.08991 * 113.61945 * 220.01878 * 18 17 15 20 20 N 1.46507 * 113.61353 * 89.11809 * 18 17 15 21 21 C 1.34775 * 120.00046 * 104.50460 * 20 18 17 22 22 O 1.21506 * 120.00140 * 0.02562 * 21 20 18 23 23 O 1.34640 * 119.99819 * 180.02562 * 21 20 18 24 24 C 1.45199 * 116.99634 * 180.02562 * 23 21 20 25 25 C 1.52997 * 109.47059 * 60.00115 * 24 23 21 26 26 C 1.53002 * 109.46877 * 180.02562 * 24 23 21 27 27 C 1.53002 * 109.47294 * 299.99694 * 24 23 21 28 28 C 1.53777 * 113.61762 * 142.00552 * 15 13 12 29 29 C 1.53003 * 113.61430 * 334.56133 * 28 15 13 30 30 C 1.53006 * 113.61695 * 105.46841 * 28 15 13 31 31 H 1.09000 * 109.46846 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46812 * 299.99382 * 1 2 3 33 33 H 1.09002 * 109.47299 * 59.99550 * 1 2 3 34 34 H 0.97002 * 120.00189 * 180.02562 * 7 6 4 35 35 H 0.97002 * 119.99473 * 94.99807 * 12 2 1 36 36 H 1.09006 * 113.61778 * 254.53224 * 17 15 13 37 37 H 1.09001 * 113.61445 * 25.34923 * 17 15 13 38 38 H 0.97003 * 119.99770 * 284.50524 * 20 18 17 39 39 H 1.08995 * 109.47232 * 60.00093 * 25 24 23 40 40 H 1.09008 * 109.46856 * 179.97438 * 25 24 23 41 41 H 1.08996 * 109.46963 * 299.99291 * 25 24 23 42 42 H 1.09004 * 109.47326 * 59.99767 * 26 24 23 43 43 H 1.09000 * 109.47469 * 180.02562 * 26 24 23 44 44 H 1.09002 * 109.46977 * 300.00024 * 26 24 23 45 45 H 1.08999 * 109.46886 * 60.00126 * 27 24 23 46 46 H 1.08996 * 109.47085 * 180.02562 * 27 24 23 47 47 H 1.08995 * 109.47272 * 300.00386 * 27 24 23 48 48 H 1.09003 * 109.46863 * 67.08242 * 29 28 15 49 49 H 1.08996 * 109.47262 * 187.07538 * 29 28 15 50 50 H 1.09001 * 109.47119 * 307.08369 * 29 28 15 51 51 H 1.09000 * 109.46907 * 59.99919 * 30 28 15 52 52 H 1.08994 * 109.46782 * 180.02562 * 30 28 15 53 53 H 1.08996 * 109.46685 * 300.00263 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 2.1379 -0.8589 -3.5566 8 14 0.6258 1.2800 -2.6540 9 1 -0.8022 0.8745 -2.6992 10 1 0.8490 2.1773 -1.4921 11 1 0.9770 1.9955 -3.9069 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8591 1.1585 2.4116 15 6 2.6500 -0.7288 3.5873 16 1 1.8543 -1.2201 4.1474 17 6 3.8658 -1.6325 3.3232 18 6 4.4301 -1.1319 4.6632 19 1 5.5034 -0.9435 4.6420 20 7 4.0156 -1.9397 5.8130 21 6 4.8858 -2.7961 6.3837 22 8 6.0143 -2.8980 5.9449 23 8 4.5047 -3.5389 7.4400 24 6 5.4943 -4.4394 8.0040 25 6 6.7031 -3.6331 8.4831 26 6 4.8825 -5.1934 9.1864 27 6 5.9397 -5.4409 6.9366 28 6 3.5786 0.1324 4.4596 29 6 4.2981 1.2373 3.6833 30 6 2.9178 0.6396 5.7430 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.9038 -0.5272 -4.4376 35 1 2.2490 -1.6319 1.1524 36 1 3.6270 -2.6960 3.3200 37 1 4.4560 -1.3287 2.4586 38 1 3.1148 -1.8581 6.1636 39 1 6.3858 -2.9197 9.2436 40 1 7.4459 -4.3091 8.9069 41 1 7.1389 -3.0964 7.6404 42 1 4.0213 -5.7678 8.8448 43 1 5.6254 -5.8691 9.6102 44 1 4.5648 -4.4802 9.9470 45 1 6.3754 -4.9041 6.0939 46 1 6.6822 -6.1171 7.3601 47 1 5.0785 -6.0152 6.5953 48 1 3.5707 1.9734 3.3410 49 1 5.0272 1.7218 4.3326 50 1 4.8086 0.8038 2.8234 51 1 2.5988 -0.2095 6.3475 52 1 3.6321 1.2395 6.3068 53 1 2.0516 1.2503 5.4887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874251396.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:28 Heat of formation + Delta-G solvation = -122.475989 kcal Electronic energy + Delta-G solvation = -31249.529000 eV Core-core repulsion = 27121.255784 eV Total energy + Delta-G solvation = -4128.273216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35464 -41.43081 -39.60089 -37.88641 -36.73525 -35.34109 -34.39775 -34.11514 -32.29425 -31.05374 -28.40462 -28.31859 -28.24973 -27.43020 -27.14400 -24.26926 -23.26527 -22.83073 -21.36751 -21.04063 -19.93389 -19.10131 -18.80048 -17.78764 -17.42026 -17.24232 -17.15129 -16.49240 -16.31400 -16.12880 -15.68988 -15.34815 -15.06807 -14.87609 -14.76063 -14.56664 -14.38099 -14.13566 -14.10846 -13.71100 -13.44118 -13.30610 -13.26626 -13.15243 -13.05987 -12.86578 -12.82025 -12.79748 -12.73634 -12.62717 -12.35270 -12.25504 -12.13110 -12.05182 -11.62280 -11.41571 -11.35671 -11.32578 -11.23607 -11.07875 -10.86746 -10.42119 -10.14973 -9.78135 -8.37622 -6.43170 1.12321 1.26945 1.35221 1.44553 1.76601 1.83579 2.26078 2.51043 2.98704 3.09995 3.25311 3.35260 3.67967 3.77580 3.79477 3.84720 3.99156 4.16286 4.19395 4.42768 4.46315 4.47729 4.56025 4.60908 4.64875 4.65934 4.73313 4.80537 4.81312 4.81595 4.85662 4.89094 4.90574 4.92529 4.98868 5.01171 5.05043 5.13799 5.17763 5.31329 5.32910 5.34360 5.39175 5.40340 5.45664 5.51067 5.62557 5.71098 6.15275 6.41398 6.59113 6.94062 7.20602 7.36611 7.51751 8.77691 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019938 B = 0.002389 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.034786 B =11716.895433 C =12371.125451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.242 3.758 3 H 0.022 0.978 4 C -0.530 4.530 5 H 0.055 0.945 6 C 0.027 3.973 7 N -0.935 5.935 8 Si 0.940 3.060 9 H -0.261 1.261 10 H -0.262 1.262 11 H -0.294 1.294 12 N -0.701 5.701 13 C 0.515 3.485 14 O -0.584 6.584 15 C -0.121 4.121 16 H 0.141 0.859 17 C -0.142 4.142 18 C 0.157 3.843 19 H 0.101 0.899 20 N -0.679 5.679 21 C 0.650 3.350 22 O -0.590 6.590 23 O -0.367 6.367 24 C 0.126 3.874 25 C -0.180 4.180 26 C -0.136 4.136 27 C -0.182 4.182 28 C -0.054 4.054 29 C -0.135 4.135 30 C -0.132 4.132 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.270 0.730 35 H 0.404 0.596 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.417 0.583 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.045 0.955 51 H 0.073 0.927 52 H 0.068 0.932 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.305 -6.756 28.201 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.137 3.863 3 H 0.040 0.960 4 C -0.569 4.569 5 H 0.073 0.927 6 C -0.172 4.172 7 N -0.574 5.574 8 Si 0.767 3.233 9 H -0.186 1.186 10 H -0.186 1.186 11 H -0.221 1.221 12 N -0.350 5.350 13 C 0.303 3.697 14 O -0.465 6.465 15 C -0.142 4.142 16 H 0.158 0.842 17 C -0.181 4.181 18 C 0.052 3.948 19 H 0.119 0.881 20 N -0.339 5.339 21 C 0.403 3.597 22 O -0.481 6.481 23 O -0.282 6.282 24 C 0.090 3.910 25 C -0.237 4.237 26 C -0.193 4.193 27 C -0.239 4.239 28 C -0.055 4.055 29 C -0.192 4.192 30 C -0.190 4.190 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.239 0.761 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.256 0.744 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.064 0.936 51 H 0.092 0.908 52 H 0.087 0.913 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.675 -6.068 27.895 28.928 hybrid contribution -0.619 0.249 -1.033 1.230 sum 4.057 -5.818 26.862 27.783 Atomic orbital electron populations 1.22335 0.97952 1.01560 0.99400 1.18728 0.91095 0.93152 0.83370 0.95967 1.21270 1.32141 1.13450 0.90003 0.92703 1.25575 0.96910 0.99359 0.95402 1.69984 1.46780 1.41982 0.98639 0.85993 0.79739 0.80388 0.77151 1.18625 1.18632 1.22127 1.46094 1.65373 1.14209 1.09299 1.20946 0.76798 0.86947 0.85016 1.90600 1.52477 1.17627 1.85821 1.23043 0.98660 0.98214 0.94276 0.84173 1.23435 0.95873 1.00585 0.98196 1.21712 0.99542 0.89898 0.83613 0.88103 1.44345 1.15775 1.41056 1.32733 1.18200 0.83600 0.78785 0.79091 1.90911 1.20488 1.70301 1.66375 1.86311 1.45696 1.52457 1.43707 1.22395 0.87116 0.87690 0.93825 1.22473 0.97796 1.01296 1.02139 1.21886 1.02391 1.00088 0.94928 1.22486 1.02560 0.99157 0.99671 1.21945 0.94138 0.93468 0.95969 1.21691 1.00285 0.97899 0.99319 1.21683 1.00804 1.01661 0.94823 0.91800 0.93412 0.94282 0.92124 0.76103 0.89129 0.89185 0.74416 0.91785 0.89271 0.91965 0.91242 0.88114 0.91042 0.91992 0.89256 0.92028 0.91817 0.90636 0.93558 0.90795 0.91347 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.63 8.96 71.98 0.65 -5.98 16 2 C 0.24 11.31 2.15 44.24 0.10 11.40 16 3 H 0.02 1.17 6.63 -2.39 -0.02 1.15 16 4 C -0.53 -28.81 9.31 25.60 0.24 -28.57 16 5 H 0.05 3.18 7.98 -2.91 -0.02 3.16 16 6 C 0.03 1.53 5.45 84.65 0.46 1.99 16 7 N -0.93 -56.21 13.96 21.45 0.30 -55.91 16 8 Si 0.94 44.81 24.37 68.60 1.67 46.48 16 9 H -0.26 -11.67 6.87 99.48 0.68 -10.99 16 10 H -0.26 -12.36 6.53 99.48 0.65 -11.71 16 11 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 12 N -0.70 -26.60 4.96 -446.10 -2.21 -28.81 16 13 C 0.52 17.72 6.50 87.66 0.57 18.30 16 14 O -0.58 -24.18 14.26 -3.05 -0.04 -24.23 16 15 C -0.12 -2.84 3.60 -11.02 -0.04 -2.88 16 16 H 0.14 2.58 8.10 -2.38 -0.02 2.56 16 17 C -0.14 -3.15 6.50 31.12 0.20 -2.95 16 18 C 0.16 3.19 3.73 45.52 0.17 3.36 16 19 H 0.10 2.32 7.50 -2.39 -0.02 2.30 16 20 N -0.68 -12.03 4.77 -567.61 -2.70 -14.74 16 21 C 0.65 14.23 8.06 129.79 1.05 15.28 16 22 O -0.59 -16.12 11.52 19.82 0.23 -15.89 16 23 O -0.37 -7.02 9.94 -55.49 -0.55 -7.57 16 24 C 0.13 1.96 1.13 -10.79 -0.01 1.95 16 25 C -0.18 -2.78 8.37 71.98 0.60 -2.17 16 26 C -0.14 -1.28 8.85 71.98 0.64 -0.64 16 27 C -0.18 -2.97 8.37 71.98 0.60 -2.37 16 28 C -0.05 -1.15 1.15 -51.65 -0.06 -1.21 16 29 C -0.13 -3.45 8.00 71.98 0.58 -2.87 16 30 C -0.13 -2.29 9.02 71.98 0.65 -1.64 16 31 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.04 1.72 3.27 -2.39 -0.01 1.71 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.40 13.76 8.07 -92.71 -0.75 13.01 16 36 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.09 2.29 7.56 -2.39 -0.02 2.27 16 38 H 0.42 5.54 6.88 -92.71 -0.64 4.90 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.06 1.33 5.88 -2.39 -0.01 1.31 16 42 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 46 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.06 2.00 6.18 -2.39 -0.01 1.99 16 49 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.05 1.28 7.31 -2.39 -0.02 1.26 16 51 H 0.07 0.94 5.83 -2.39 -0.01 0.93 16 52 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.01 404.68 2.53 -67.48 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.55 Total: 32.19 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 6.38 Total: 1.00 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -4.62 Total: -99.46 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -0.37 Total: -47.69 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.67 Total: 46.48 kcal Total: -70.01 2.53 -67.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874251396.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.994 kcal (2) G-P(sol) polarization free energy of solvation -70.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds