Wall clock time and date at job start Sat Apr 11 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47369 * 2 1 4 4 C 1.50706 * 109.46994 * 240.00273 * 2 1 3 5 5 H 1.07999 * 120.00002 * 239.99901 * 4 2 1 6 6 C 1.37876 * 119.99885 * 59.99433 * 4 2 1 7 7 N 1.31513 * 120.00189 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99935 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46766 * 60.00332 * 8 6 4 10 10 H 1.48499 * 109.46989 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46959 * 300.00577 * 8 6 4 12 12 N 1.46497 * 109.47271 * 120.00286 * 2 1 3 13 13 C 1.34771 * 120.00095 * 274.99918 * 12 2 1 14 14 O 1.21286 * 120.00045 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00159 * 180.02562 * 13 12 2 16 16 H 1.09001 * 112.84791 * 75.47847 * 15 13 12 17 17 C 1.53783 * 113.61514 * 304.16579 * 15 13 12 18 18 C 1.53778 * 87.07966 * 220.01978 * 17 15 13 19 19 H 1.08995 * 113.69026 * 270.86936 * 18 17 15 20 20 N 1.46503 * 113.60972 * 139.98500 * 18 17 15 21 21 C 1.34777 * 120.00294 * 107.50447 * 20 18 17 22 22 O 1.21507 * 119.99782 * 359.97438 * 21 20 18 23 23 O 1.34631 * 120.00031 * 179.97438 * 21 20 18 24 24 C 1.45204 * 117.00296 * 179.97438 * 23 21 20 25 25 C 1.53008 * 109.46597 * 60.00089 * 24 23 21 26 26 C 1.52993 * 109.47354 * 179.97438 * 24 23 21 27 27 C 1.53000 * 109.46967 * 300.00388 * 24 23 21 28 28 C 1.53777 * 87.08409 * 25.43268 * 18 17 15 29 29 C 1.52993 * 113.61345 * 220.01442 * 28 18 17 30 30 C 1.53004 * 113.61456 * 89.11360 * 28 18 17 31 31 H 1.09004 * 109.47213 * 300.00138 * 1 2 3 32 32 H 1.09002 * 109.47369 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47635 * 59.99622 * 1 2 3 34 34 H 0.97003 * 120.00074 * 179.97438 * 7 6 4 35 35 H 0.97006 * 119.99998 * 94.99856 * 12 2 1 36 36 H 1.08999 * 113.61219 * 334.57220 * 17 15 13 37 37 H 1.08997 * 113.60931 * 105.46605 * 17 15 13 38 38 H 0.97003 * 120.00079 * 287.49220 * 20 18 17 39 39 H 1.08998 * 109.47115 * 60.00073 * 25 24 23 40 40 H 1.09001 * 109.46720 * 180.02562 * 25 24 23 41 41 H 1.09003 * 109.46755 * 299.99778 * 25 24 23 42 42 H 1.08999 * 109.47574 * 60.00747 * 26 24 23 43 43 H 1.09008 * 109.46908 * 180.02562 * 26 24 23 44 44 H 1.09006 * 109.47283 * 299.99812 * 26 24 23 45 45 H 1.08998 * 109.47418 * 59.99965 * 27 24 23 46 46 H 1.09008 * 109.46814 * 179.97438 * 27 24 23 47 47 H 1.08999 * 109.47184 * 299.99594 * 27 24 23 48 48 H 1.09004 * 109.47342 * 157.49850 * 29 28 18 49 49 H 1.08998 * 109.47476 * 277.49606 * 29 28 18 50 50 H 1.09002 * 109.47576 * 37.50406 * 29 28 18 51 51 H 1.09004 * 109.46916 * 307.29284 * 30 28 18 52 52 H 1.09008 * 109.46824 * 67.28817 * 30 28 18 53 53 H 1.09000 * 109.47448 * 187.28924 * 30 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9433 0.8302 -2.6034 8 14 2.3223 -1.1194 -4.0081 9 1 1.8279 -2.5197 -4.0083 10 1 1.8276 -0.4191 -5.2205 11 1 3.8074 -1.1188 -4.0079 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8582 1.1583 2.4117 15 6 2.6500 -0.7287 3.5873 16 1 3.7251 -0.9066 3.5636 17 6 1.8259 -1.9722 3.9609 18 6 1.9837 -1.5392 5.4280 19 1 2.8759 -1.9396 5.9092 20 7 0.7718 -1.7283 6.2291 21 6 0.7172 -2.7144 7.1461 22 8 1.6729 -3.4470 7.3081 23 8 -0.3964 -2.8878 7.8827 24 6 -0.3846 -3.9700 8.8508 25 6 0.7434 -3.7402 9.8587 26 6 -1.7252 -4.0103 9.5869 27 6 -0.1592 -5.2991 8.1272 28 6 2.1580 -0.1041 4.9036 29 6 3.2341 0.6924 5.6441 30 6 0.8407 0.6616 4.7639 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 0.7092 1.1618 -3.4844 35 1 2.2490 -1.6319 1.1525 36 1 0.7968 -1.9375 3.6035 37 1 2.3247 -2.9128 3.7271 38 1 0.0087 -1.1436 6.0997 39 1 0.5828 -2.7933 10.3741 40 1 0.7525 -4.5528 10.5852 41 1 1.6987 -3.7112 9.3345 42 1 -2.5291 -4.1738 8.8692 43 1 -1.7161 -4.8225 10.3140 44 1 -1.8853 -3.0634 10.1025 45 1 0.7961 -5.2700 7.6032 46 1 -0.1499 -6.1114 8.8541 47 1 -0.9627 -5.4627 7.4092 48 1 3.5852 1.5060 5.0093 49 1 2.8148 1.1032 6.5625 50 1 4.0692 0.0356 5.8878 51 1 0.1403 0.0742 4.1701 52 1 0.4178 0.8405 5.7526 53 1 1.0254 1.6154 4.2697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874251397.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:30 Heat of formation + Delta-G solvation = -133.453778 kcal Electronic energy + Delta-G solvation = -31175.609335 eV Core-core repulsion = 27046.860087 eV Total energy + Delta-G solvation = -4128.749249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25368 -41.41541 -39.44896 -37.88331 -36.59929 -35.34446 -34.32366 -34.13898 -31.93497 -30.61364 -28.43376 -28.31409 -28.25639 -27.37103 -27.12535 -24.18525 -23.34310 -22.62788 -21.13244 -21.09542 -19.93770 -19.10857 -18.49714 -17.83691 -17.32234 -17.15413 -17.07542 -16.32821 -16.30660 -15.77696 -15.70404 -15.39779 -15.11832 -14.85024 -14.59637 -14.42513 -14.17803 -14.10875 -13.75161 -13.34970 -13.29001 -13.16635 -13.05706 -13.00728 -12.88672 -12.85295 -12.82157 -12.77531 -12.63063 -12.54845 -12.37078 -12.25788 -12.23332 -12.15451 -11.91704 -11.74801 -11.35196 -11.30570 -11.08845 -11.05314 -10.61718 -10.29303 -10.06914 -9.65336 -8.16702 -6.33861 1.20385 1.44687 1.46424 1.54174 1.77572 1.92530 2.36813 2.68961 3.13342 3.18898 3.27080 3.40899 3.70490 3.77290 3.79645 3.84705 3.99135 4.22142 4.26087 4.44686 4.47442 4.59147 4.62301 4.66004 4.77670 4.77788 4.80761 4.80912 4.88597 4.88956 4.91921 4.93840 4.96534 5.02000 5.05217 5.10879 5.14531 5.17589 5.32620 5.32908 5.39327 5.43157 5.47296 5.54629 5.61052 5.65991 5.73786 5.94672 6.13136 6.43141 6.74706 7.05742 7.34342 7.36573 7.64909 8.89049 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017839 B = 0.002321 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.221227 B =12062.511664 C =12698.178785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.272 3.728 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.071 0.929 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.706 5.706 13 C 0.512 3.488 14 O -0.587 6.587 15 C -0.123 4.123 16 H 0.139 0.861 17 C -0.136 4.136 18 C 0.159 3.841 19 H 0.127 0.873 20 N -0.691 5.691 21 C 0.648 3.352 22 O -0.589 6.589 23 O -0.372 6.372 24 C 0.124 3.876 25 C -0.179 4.179 26 C -0.137 4.137 27 C -0.180 4.180 28 C -0.059 4.059 29 C -0.132 4.132 30 C -0.129 4.129 31 H 0.013 0.987 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.412 0.588 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.058 0.942 48 H 0.051 0.949 49 H 0.066 0.934 50 H 0.074 0.926 51 H 0.043 0.957 52 H 0.073 0.927 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.495 -10.701 24.948 27.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.169 3.831 3 H 0.015 0.985 4 C -0.585 4.585 5 H 0.089 0.911 6 C -0.186 4.186 7 N -0.555 5.555 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.355 5.355 13 C 0.299 3.701 14 O -0.468 6.468 15 C -0.145 4.145 16 H 0.157 0.843 17 C -0.175 4.175 18 C 0.055 3.945 19 H 0.145 0.855 20 N -0.350 5.350 21 C 0.402 3.598 22 O -0.479 6.479 23 O -0.287 6.287 24 C 0.088 3.912 25 C -0.236 4.236 26 C -0.194 4.194 27 C -0.237 4.237 28 C -0.060 4.060 29 C -0.190 4.190 30 C -0.186 4.186 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.250 0.750 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.093 0.907 51 H 0.062 0.938 52 H 0.092 0.908 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.374 -10.162 24.987 27.009 hybrid contribution -0.061 -0.069 -1.452 1.455 sum -1.436 -10.230 23.535 25.702 Atomic orbital electron populations 1.21871 0.98437 0.99193 0.99485 1.18272 0.90962 0.91815 0.82069 0.98459 1.21534 1.32493 1.13502 0.90961 0.91062 1.25786 0.94933 0.95604 1.02286 1.70044 1.37019 1.23888 1.24582 0.85431 0.78661 0.78707 0.77730 1.18961 1.21228 1.19602 1.46311 1.65284 1.14131 1.09751 1.20902 0.77353 0.86897 0.84935 1.90607 1.52768 1.17983 1.85487 1.22755 1.02691 0.97552 0.91477 0.84303 1.23432 1.00717 0.97605 0.95724 1.22609 0.87487 0.95392 0.88973 0.85491 1.44787 1.19280 1.33053 1.37852 1.18271 0.81464 0.81096 0.79010 1.90879 1.38045 1.47723 1.71300 1.86322 1.38212 1.54174 1.50009 1.22409 0.98486 0.83941 0.86366 1.22467 0.98867 1.03194 0.99042 1.21891 0.93120 1.04149 1.00232 1.22476 1.03034 0.96425 1.01795 1.22051 0.97151 0.93983 0.92804 1.21710 0.97455 1.00003 0.99788 1.21607 0.94770 1.00932 1.01327 0.96790 0.94409 0.91744 0.92611 0.76362 0.89956 0.88358 0.75030 0.91989 0.89162 0.91712 0.91476 0.87947 0.91221 0.91737 0.89121 0.92288 0.93028 0.91503 0.90730 0.93822 0.90822 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.59 9.26 71.98 0.67 -5.92 16 2 C 0.27 13.98 2.56 44.25 0.11 14.10 16 3 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 4 C -0.55 -28.85 8.73 25.60 0.22 -28.63 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -52.61 11.32 21.45 0.24 -52.37 16 8 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 9 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 N -0.71 -28.51 5.01 -446.10 -2.24 -30.75 16 13 C 0.51 19.17 6.59 87.66 0.58 19.75 16 14 O -0.59 -26.79 13.69 -3.05 -0.04 -26.83 16 15 C -0.12 -3.14 3.67 -11.01 -0.04 -3.18 16 16 H 0.14 2.97 8.10 -2.39 -0.02 2.95 16 17 C -0.14 -2.98 6.94 31.12 0.22 -2.76 16 18 C 0.16 3.24 3.68 45.51 0.17 3.41 16 19 H 0.13 2.54 7.28 -2.39 -0.02 2.53 16 20 N -0.69 -14.14 5.25 -567.63 -2.98 -17.12 16 21 C 0.65 15.09 8.06 129.79 1.05 16.13 16 22 O -0.59 -15.79 11.48 19.82 0.23 -15.57 16 23 O -0.37 -7.89 9.94 -55.40 -0.55 -8.45 16 24 C 0.12 2.06 1.13 -10.79 -0.01 2.05 16 25 C -0.18 -2.81 8.37 71.98 0.60 -2.21 16 26 C -0.14 -1.48 8.85 71.98 0.64 -0.84 16 27 C -0.18 -3.01 8.37 71.98 0.60 -2.40 16 28 C -0.06 -1.33 1.17 -51.66 -0.06 -1.39 16 29 C -0.13 -2.68 9.19 71.98 0.66 -2.01 16 30 C -0.13 -3.33 6.42 71.98 0.46 -2.87 16 31 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 3.57 6.07 -2.39 -0.01 3.55 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.40 13.89 8.45 -92.70 -0.78 13.11 16 36 H 0.08 2.01 7.55 -2.39 -0.02 2.00 16 37 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.41 7.66 6.95 -92.71 -0.64 7.02 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 42 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 46 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.07 1.24 7.94 -2.39 -0.02 1.22 16 51 H 0.04 1.20 7.08 -2.39 -0.02 1.19 16 52 H 0.07 1.49 7.54 -2.38 -0.02 1.47 16 53 H 0.06 2.01 6.41 -2.39 -0.02 1.99 16 Total: -1.00 -68.38 412.32 2.48 -65.90 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -0.52 Total: 36.73 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 6.31 Total: 4.41 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -4.98 Total: -100.23 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -0.36 Total: -50.85 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -68.38 2.48 -65.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874251397.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.551 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds