Wall clock time and date at job start Sat Apr 11 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47008 * 2 1 4 4 C 1.50697 * 109.47048 * 240.00821 * 2 1 3 5 5 H 1.08007 * 120.00033 * 240.00064 * 4 2 1 6 6 C 1.37883 * 120.00382 * 59.99547 * 4 2 1 7 7 N 1.31512 * 119.99785 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00159 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47012 * 90.00054 * 8 6 4 10 10 H 1.48494 * 109.47202 * 209.99919 * 8 6 4 11 11 H 1.48504 * 109.47158 * 330.00070 * 8 6 4 12 12 N 1.46491 * 109.47267 * 120.00606 * 2 1 3 13 13 C 1.34780 * 120.00254 * 274.99731 * 12 2 1 14 14 O 1.21284 * 119.99517 * 0.02562 * 13 12 2 15 15 C 1.50692 * 120.00439 * 180.02562 * 13 12 2 16 16 H 1.08997 * 110.88928 * 36.32440 * 15 13 12 17 17 C 1.54910 * 111.04109 * 160.22924 * 15 13 12 18 18 N 1.47417 * 104.83540 * 155.09637 * 17 15 13 19 19 C 1.34783 * 125.65056 * 156.13868 * 18 17 15 20 20 O 1.21508 * 120.00215 * 179.69017 * 19 18 17 21 21 O 1.34633 * 119.99491 * 359.69122 * 19 18 17 22 22 C 1.45200 * 116.99621 * 179.97438 * 21 19 18 23 23 C 1.53006 * 109.47087 * 60.00413 * 22 21 19 24 24 C 1.53002 * 109.47039 * 179.97438 * 22 21 19 25 25 C 1.52990 * 109.47491 * 300.00085 * 22 21 19 26 26 C 1.47024 * 108.70594 * 335.87420 * 18 17 15 27 27 C 1.54325 * 107.26914 * 1.05604 * 26 18 17 28 28 C 1.52995 * 110.72062 * 140.55429 * 27 26 18 29 29 C 1.53002 * 110.72284 * 263.83246 * 27 26 18 30 30 H 1.09003 * 109.47008 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46912 * 299.99258 * 1 2 3 32 32 H 1.08996 * 109.47410 * 59.99054 * 1 2 3 33 33 H 0.96994 * 120.00152 * 179.97438 * 7 6 4 34 34 H 0.96999 * 120.00180 * 95.00165 * 12 2 1 35 35 H 1.09011 * 110.36206 * 36.25751 * 17 15 13 36 36 H 1.08998 * 110.37026 * 273.94082 * 17 15 13 37 37 H 1.08994 * 109.46996 * 59.99528 * 23 22 21 38 38 H 1.09002 * 109.47410 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.46748 * 300.00017 * 23 22 21 40 40 H 1.09002 * 109.46812 * 60.00605 * 24 22 21 41 41 H 1.09002 * 109.46920 * 180.02562 * 24 22 21 42 42 H 1.09002 * 109.47154 * 300.00333 * 24 22 21 43 43 H 1.09004 * 109.47129 * 60.00144 * 25 22 21 44 44 H 1.09002 * 109.47730 * 180.02562 * 25 22 21 45 45 H 1.09002 * 109.47382 * 300.00021 * 25 22 21 46 46 H 1.08994 * 109.88365 * 120.47022 * 26 18 17 47 47 H 1.08999 * 109.88557 * 241.48762 * 26 18 17 48 48 H 1.09003 * 109.47390 * 61.45963 * 28 27 26 49 49 H 1.09008 * 109.47296 * 181.45440 * 28 27 26 50 50 H 1.08999 * 109.47160 * 301.45696 * 28 27 26 51 51 H 1.08994 * 109.47103 * 64.54506 * 29 27 26 52 52 H 1.09003 * 109.46917 * 184.54666 * 29 27 26 53 53 H 1.08997 * 109.46922 * 304.54567 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 1 2.6533 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3213 -1.1199 -4.0081 9 1 1.3426 -2.1613 -4.4121 10 1 2.4864 -0.1409 -5.1124 11 1 3.6293 -1.7579 -3.7125 12 7 2.0183 -0.6907 1.1960 13 6 2.1472 -0.0185 2.3571 14 8 1.8583 1.1582 2.4117 15 6 2.6500 -0.7288 3.5873 16 1 3.4138 -1.4619 3.3279 17 6 3.1829 0.2813 4.6340 18 7 3.0568 -0.4140 5.9277 19 6 3.7771 -0.1486 7.0357 20 8 3.5838 -0.7846 8.0528 21 8 4.7107 0.8212 7.0152 22 6 5.4477 1.0525 8.2447 23 6 6.1905 -0.2248 8.6421 24 6 6.4567 2.1825 8.0295 25 6 4.4735 1.4432 9.3576 26 6 2.0109 -1.4407 5.8113 27 6 1.4817 -1.3934 4.3624 28 6 1.2172 -2.8055 3.8364 29 6 0.2175 -0.5360 4.2755 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 0.7094 1.1621 -3.4843 34 1 2.2491 -1.6318 1.1524 35 1 2.5767 1.1873 4.6296 36 1 4.2268 0.5213 4.4324 37 1 6.8846 -0.5031 7.8491 38 1 6.7442 -0.0510 9.5648 39 1 5.4720 -1.0301 8.7952 40 1 5.9279 3.0926 7.7462 41 1 7.0103 2.3558 8.9523 42 1 7.1508 1.9037 7.2366 43 1 3.7550 0.6379 9.5109 44 1 5.0268 1.6173 10.2805 45 1 3.9444 2.3532 9.0746 46 1 2.4319 -2.4241 6.0203 47 1 1.2026 -1.2274 6.5108 48 1 0.4556 -3.2855 4.4510 49 1 0.8693 -2.7497 2.8048 50 1 2.1379 -3.3873 3.8784 51 1 0.4613 0.4970 4.5233 52 1 -0.1837 -0.5819 3.2631 53 1 -0.5258 -0.9124 4.9783 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878533582.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:43 Heat of formation + Delta-G solvation = -147.506629 kcal Electronic energy + Delta-G solvation = -31635.160447 eV Core-core repulsion = 27505.801821 eV Total energy + Delta-G solvation = -4129.358626 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15120 -41.24036 -39.37257 -37.74127 -36.63857 -35.44085 -34.48944 -34.13535 -31.68553 -30.34572 -28.35186 -28.31010 -28.29155 -27.72167 -27.30585 -25.45576 -23.23916 -22.45651 -21.27970 -20.58429 -20.26405 -18.83212 -18.66227 -17.95835 -17.57716 -17.28067 -17.04105 -16.38054 -16.08784 -15.94289 -15.52697 -15.22992 -15.10559 -14.85705 -14.60032 -14.42537 -14.35199 -14.18158 -13.74741 -13.60767 -13.43782 -13.34159 -13.09321 -12.97151 -12.89184 -12.86641 -12.85848 -12.80216 -12.69306 -12.64963 -12.43995 -12.32036 -12.25106 -12.13859 -12.01673 -11.81359 -11.61851 -11.39254 -11.14204 -11.06301 -10.67574 -10.52504 -9.84959 -9.70106 -8.15347 -6.32203 1.01610 1.46220 1.47106 1.57137 1.68017 1.78796 2.33353 2.51673 2.91336 3.15486 3.29386 3.35927 3.71588 3.75666 3.81021 3.95433 3.98764 4.11394 4.15081 4.22999 4.43761 4.57663 4.61448 4.62972 4.68977 4.72855 4.76570 4.77400 4.81158 4.83907 4.86021 4.88099 4.92043 4.95825 5.01730 5.06511 5.09944 5.14657 5.16712 5.29036 5.32226 5.33956 5.40652 5.44414 5.48035 5.64574 5.73214 5.94487 6.13994 6.31699 6.76217 6.99927 7.19697 7.35367 7.58737 8.90672 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.002512 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.225561 B =11142.324407 C =11745.561537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.273 3.727 3 H -0.002 1.002 4 C -0.544 4.544 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.264 1.264 12 N -0.699 5.699 13 C 0.520 3.480 14 O -0.591 6.591 15 C -0.111 4.111 16 H 0.129 0.871 17 C 0.128 3.872 18 N -0.602 5.602 19 C 0.666 3.334 20 O -0.585 6.585 21 O -0.371 6.371 22 C 0.121 3.879 23 C -0.177 4.177 24 C -0.137 4.137 25 C -0.178 4.178 26 C 0.139 3.861 27 C -0.050 4.050 28 C -0.138 4.138 29 C -0.139 4.139 30 H 0.040 0.960 31 H 0.013 0.987 32 H 0.063 0.937 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.056 0.944 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.060 0.940 50 H 0.080 0.920 51 H 0.042 0.958 52 H 0.045 0.955 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.403 -5.992 21.044 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.170 3.830 3 H 0.016 0.984 4 C -0.582 4.582 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.794 3.206 9 H -0.197 1.197 10 H -0.215 1.215 11 H -0.188 1.188 12 N -0.348 5.348 13 C 0.307 3.693 14 O -0.473 6.473 15 C -0.132 4.132 16 H 0.147 0.853 17 C 0.004 3.996 18 N -0.342 5.342 19 C 0.422 3.578 20 O -0.477 6.477 21 O -0.286 6.286 22 C 0.085 3.915 23 C -0.234 4.234 24 C -0.194 4.194 25 C -0.235 4.235 26 C 0.018 3.982 27 C -0.051 4.051 28 C -0.195 4.195 29 C -0.196 4.196 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.239 0.761 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.113 0.887 45 H 0.075 0.925 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.079 0.921 50 H 0.099 0.901 51 H 0.061 0.939 52 H 0.064 0.936 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.170 -5.181 21.358 23.117 hybrid contribution 0.041 -0.134 -1.156 1.164 sum 7.210 -5.316 20.202 22.099 Atomic orbital electron populations 1.21872 0.98275 0.99400 0.99460 1.18297 0.91062 0.91825 0.81826 0.98406 1.21557 1.32404 1.13476 0.90801 0.90820 1.25765 0.94953 0.95552 1.02261 1.70050 1.37127 1.23916 1.24503 0.85391 0.79016 0.78036 0.78171 1.19703 1.21506 1.18796 1.46242 1.64959 1.14112 1.09446 1.20447 0.77408 0.86714 0.84765 1.90653 1.52935 1.18106 1.85575 1.22585 1.00074 0.98607 0.91982 0.85300 1.22029 1.02188 0.94874 0.80479 1.47148 1.38592 1.38767 1.09726 1.17552 0.78635 0.79338 0.82323 1.90877 1.71427 1.54175 1.31197 1.86356 1.48229 1.52016 1.41975 1.22480 0.91077 0.97336 0.80592 1.22456 1.00763 0.97129 1.03042 1.21896 0.97249 0.95852 1.04399 1.22463 1.00243 1.02030 0.98803 1.22182 0.88951 0.90991 0.96059 1.21530 0.93354 0.97666 0.92525 1.21868 1.03747 0.92223 1.01691 1.21861 0.96631 0.99083 1.02050 0.94064 0.96800 0.91850 0.92659 0.76056 0.91332 0.89651 0.92088 0.88804 0.91719 0.91722 0.87540 0.91403 0.91785 0.88707 0.92477 0.89052 0.90471 0.89959 0.92144 0.90084 0.93864 0.93583 0.89920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 9.26 71.98 0.67 -5.72 16 2 C 0.27 13.56 2.56 44.25 0.11 13.67 16 3 H 0.00 -0.12 7.58 -2.39 -0.02 -0.14 16 4 C -0.54 -27.78 8.73 25.60 0.22 -27.56 16 5 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -51.78 11.32 21.45 0.24 -51.53 16 8 Si 0.97 41.10 29.54 68.60 2.03 43.13 16 9 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 12 N -0.70 -26.81 5.07 -446.11 -2.26 -29.07 16 13 C 0.52 18.98 5.55 87.65 0.49 19.46 16 14 O -0.59 -26.97 14.92 -3.04 -0.05 -27.02 16 15 C -0.11 -2.86 2.75 -10.15 -0.03 -2.89 16 16 H 0.13 2.70 8.04 -2.39 -0.02 2.68 16 17 C 0.13 3.49 5.90 86.86 0.51 4.00 16 18 N -0.60 -15.39 3.33 -942.10 -3.13 -18.52 16 19 C 0.67 18.50 7.93 129.79 1.03 19.53 16 20 O -0.59 -17.59 12.21 19.81 0.24 -17.35 16 21 O -0.37 -9.67 9.42 -55.42 -0.52 -10.19 16 22 C 0.12 2.39 1.13 -10.79 -0.01 2.38 16 23 C -0.18 -3.19 8.37 71.98 0.60 -2.59 16 24 C -0.14 -1.94 8.85 71.98 0.64 -1.30 16 25 C -0.18 -3.37 8.37 71.98 0.60 -2.77 16 26 C 0.14 2.91 6.04 86.73 0.52 3.44 16 27 C -0.05 -1.07 0.76 -50.99 -0.04 -1.11 16 28 C -0.14 -2.28 8.49 71.98 0.61 -1.67 16 29 C -0.14 -3.55 7.41 71.98 0.53 -3.02 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 33 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.40 12.88 8.54 -92.71 -0.79 12.09 16 35 H 0.07 2.21 6.71 -2.38 -0.02 2.19 16 36 H 0.09 2.27 8.04 -2.39 -0.02 2.25 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.49 5.88 -2.39 -0.01 1.48 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 41 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 43 H 0.06 1.54 5.88 -2.38 -0.01 1.52 16 44 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.09 1.66 7.82 -2.39 -0.02 1.64 16 47 H 0.08 1.60 7.82 -2.39 -0.02 1.58 16 48 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 49 H 0.06 1.16 8.14 -2.38 -0.02 1.15 16 50 H 0.08 1.06 8.13 -2.39 -0.02 1.05 16 51 H 0.04 1.30 7.05 -2.39 -0.02 1.28 16 52 H 0.05 1.38 7.58 -2.39 -0.02 1.36 16 53 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 Total: -1.00 -68.15 413.36 3.56 -64.59 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.10 Total: 30.87 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.91 Total: 15.09 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -5.15 Total: -99.13 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -0.33 Total: -54.55 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -68.15 3.56 -64.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878533582.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.914 kcal (2) G-P(sol) polarization free energy of solvation -68.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds