Wall clock time and date at job start Sat Apr 11 2020 06:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47123 * 2 1 4 4 C 1.50693 * 109.47232 * 239.99690 * 2 1 3 5 5 H 1.08008 * 119.99737 * 241.56407 * 4 2 1 6 6 C 1.37876 * 120.00270 * 61.56328 * 4 2 1 7 7 N 1.31511 * 120.00251 * 186.81426 * 6 4 2 8 8 Si 1.86795 * 119.99836 * 6.81724 * 6 4 2 9 9 H 1.48507 * 109.47159 * 269.99864 * 8 6 4 10 10 H 1.48498 * 109.47296 * 29.99485 * 8 6 4 11 11 H 1.48504 * 109.47486 * 149.99946 * 8 6 4 12 12 C 1.50699 * 109.47129 * 119.99331 * 2 1 3 13 13 O 1.21279 * 120.00105 * 105.85152 * 12 2 1 14 14 N 1.34776 * 120.00400 * 285.85778 * 12 2 1 15 15 C 1.47025 * 125.64291 * 3.67436 * 14 12 2 16 16 C 1.54316 * 107.27420 * 180.97092 * 15 14 12 17 17 C 1.55154 * 102.86454 * 22.52808 * 16 15 14 18 18 H 1.09007 * 111.00834 * 82.37585 * 17 16 15 19 19 C 1.53000 * 111.00867 * 206.23001 * 17 16 15 20 20 C 1.53002 * 109.46785 * 287.19589 * 19 17 16 21 21 N 1.46500 * 109.47131 * 180.02562 * 20 19 17 22 22 C 1.34775 * 120.00587 * 180.02562 * 21 20 19 23 23 O 1.21513 * 119.99115 * 359.97438 * 22 21 20 24 24 O 1.34639 * 120.00317 * 179.97438 * 22 21 20 25 25 C 1.45196 * 116.99777 * 179.97438 * 24 22 21 26 26 C 1.53006 * 109.47121 * 59.99932 * 25 24 22 27 27 C 1.52999 * 109.46901 * 179.97438 * 25 24 22 28 28 C 1.53002 * 109.47214 * 300.00028 * 25 24 22 29 29 C 1.47423 * 125.65447 * 183.99043 * 14 12 2 30 30 H 1.09004 * 109.47149 * 178.93237 * 1 2 3 31 31 H 1.09003 * 109.47252 * 298.93708 * 1 2 3 32 32 H 1.09001 * 109.47061 * 58.93410 * 1 2 3 33 33 H 0.97007 * 120.00230 * 354.95817 * 7 6 4 34 34 H 1.08999 * 109.88822 * 300.51487 * 15 14 12 35 35 H 1.09006 * 109.88348 * 61.68662 * 15 14 12 36 36 H 1.08997 * 110.92889 * 264.11269 * 16 15 14 37 37 H 1.09001 * 110.59122 * 140.78827 * 16 15 14 38 38 H 1.08997 * 109.47167 * 47.19477 * 19 17 16 39 39 H 1.09005 * 109.47138 * 167.19775 * 19 17 16 40 40 H 1.08996 * 109.47124 * 299.99330 * 20 19 17 41 41 H 1.08993 * 109.47429 * 60.00044 * 20 19 17 42 42 H 0.97007 * 119.99875 * 359.97438 * 21 20 19 43 43 H 1.08999 * 109.46681 * 59.99975 * 26 25 24 44 44 H 1.08994 * 109.47164 * 179.97438 * 26 25 24 45 45 H 1.08993 * 109.47333 * 300.00317 * 26 25 24 46 46 H 1.08996 * 109.46885 * 60.00742 * 27 25 24 47 47 H 1.09006 * 109.46780 * 180.02562 * 27 25 24 48 48 H 1.08999 * 109.47062 * 300.00131 * 27 25 24 49 49 H 1.09001 * 109.47317 * 60.00616 * 28 25 24 50 50 H 1.09006 * 109.47092 * 179.97438 * 28 25 24 51 51 H 1.08991 * 109.47169 * 299.99853 * 28 25 24 52 52 H 1.09007 * 110.36410 * 274.67440 * 29 14 12 53 53 H 1.09001 * 110.36291 * 36.98623 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6323 -1.6031 -1.1313 6 6 1.7261 -0.2210 -2.4824 7 7 2.0483 -0.9105 -3.5549 8 14 0.8536 1.4216 -2.6554 9 1 -0.6155 1.2043 -2.6535 10 1 1.2251 2.3016 -1.5184 11 1 1.2572 2.0647 -3.9316 12 6 2.0323 -0.7103 1.2305 13 8 2.5049 -1.8233 1.1378 14 7 1.9563 -0.1087 2.4342 15 6 1.3407 1.1996 2.7007 16 6 1.5109 1.4877 4.2072 17 6 2.7161 0.5915 4.5963 18 1 3.6602 1.0781 4.3509 19 6 2.6644 0.2159 6.0786 20 6 3.0219 1.4378 6.9271 21 7 2.9730 1.0781 8.3464 22 6 3.2530 2.0027 9.2861 23 8 3.5465 3.1347 8.9560 24 8 3.2075 1.6722 10.5905 25 6 3.5214 2.7185 11.5469 26 6 2.5329 3.8745 11.3810 27 6 3.4175 2.1591 12.9672 28 6 4.9441 3.2247 11.3005 29 6 2.4823 -0.6504 3.7004 30 1 -0.3634 -1.0275 -0.0191 31 1 -0.3634 0.4972 0.8994 32 1 -0.3633 0.5303 -0.8803 33 1 2.5655 -1.7268 -3.4695 34 1 1.8409 1.9710 2.1152 35 1 0.2807 1.1688 2.4487 36 1 0.6190 1.1970 4.7623 37 1 1.7433 2.5397 4.3725 38 1 1.6597 -0.1218 6.3330 39 1 3.3775 -0.5846 6.2757 40 1 4.0266 1.7754 6.6727 41 1 2.3088 2.2382 6.7300 42 1 2.7383 0.1745 8.6099 43 1 1.5194 3.5138 11.5566 44 1 2.7683 4.6598 12.0993 45 1 2.6064 4.2731 10.3692 46 1 4.1215 1.3355 13.0857 47 1 3.6527 2.9447 13.6852 48 1 2.4038 1.7988 13.1424 49 1 5.0177 3.6235 10.2887 50 1 5.1796 4.0106 12.0182 51 1 5.6483 2.4013 11.4187 52 1 1.7529 -1.3176 4.1596 53 1 3.4216 -1.1755 3.5271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884799692.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:47 Heat of formation + Delta-G solvation = -158.404465 kcal Electronic energy + Delta-G solvation = -29803.921521 eV Core-core repulsion = 25674.090329 eV Total energy + Delta-G solvation = -4129.831192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76548 -41.11780 -39.07551 -38.30576 -36.31604 -35.89865 -35.05342 -33.89546 -32.91587 -30.69423 -29.14092 -28.33823 -28.27129 -26.87636 -25.61111 -24.11595 -23.22702 -22.70633 -21.50444 -20.81989 -20.17078 -19.39074 -19.11315 -18.05511 -17.61234 -17.35291 -17.16528 -16.32532 -16.30623 -15.98730 -15.64883 -15.50183 -15.31806 -15.07940 -14.69460 -14.51399 -14.41939 -14.23712 -13.96823 -13.70923 -13.44459 -13.33721 -13.27619 -13.16192 -13.03120 -12.89038 -12.87381 -12.83603 -12.60943 -12.43179 -12.31243 -12.22417 -12.04533 -11.93979 -11.60294 -11.56876 -11.43815 -11.35980 -11.09343 -10.89225 -10.71914 -10.45678 -10.17174 -9.57726 -8.79599 -6.42785 1.20151 1.43138 1.56347 1.72557 1.78118 1.79437 2.13627 2.50593 3.07854 3.18347 3.41509 3.66116 3.77740 3.82401 3.83011 3.97449 3.99363 4.20353 4.25948 4.33275 4.38273 4.44308 4.52933 4.58256 4.61109 4.64048 4.68995 4.69964 4.71901 4.77953 4.79191 4.86607 4.90473 4.91759 4.93754 5.00468 5.06800 5.10222 5.17208 5.22797 5.28537 5.30566 5.38790 5.41412 5.43779 5.50755 5.62301 5.82097 6.00795 6.43754 6.53618 6.60606 7.34585 7.37699 7.41979 8.61135 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.030891 B = 0.001690 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.181819 B =16565.146526 C =16971.558902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.002 4.002 3 H 0.065 0.935 4 C -0.594 4.594 5 H 0.011 0.989 6 C -0.030 4.030 7 N -0.943 5.943 8 Si 1.098 2.902 9 H -0.255 1.255 10 H -0.236 1.236 11 H -0.294 1.294 12 C 0.536 3.464 13 O -0.597 6.597 14 N -0.627 5.627 15 C 0.085 3.915 16 C -0.116 4.116 17 C -0.085 4.085 18 H 0.087 0.913 19 C -0.107 4.107 20 C 0.142 3.858 21 N -0.701 5.701 22 C 0.642 3.358 23 O -0.595 6.595 24 O -0.370 6.370 25 C 0.125 3.875 26 C -0.180 4.180 27 C -0.137 4.137 28 C -0.180 4.180 29 C 0.103 3.897 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.246 0.754 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.417 0.583 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.060 0.940 52 H 0.073 0.927 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.050 12.400 37.046 39.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.083 0.917 4 C -0.632 4.632 5 H 0.029 0.971 6 C -0.225 4.225 7 N -0.579 5.579 8 Si 0.918 3.082 9 H -0.180 1.180 10 H -0.159 1.159 11 H -0.221 1.221 12 C 0.327 3.673 13 O -0.477 6.477 14 N -0.362 5.362 15 C -0.037 4.037 16 C -0.154 4.154 17 C -0.105 4.105 18 H 0.106 0.894 19 C -0.145 4.145 20 C 0.019 3.981 21 N -0.362 5.362 22 C 0.395 3.605 23 O -0.486 6.486 24 O -0.285 6.285 25 C 0.089 3.911 26 C -0.237 4.237 27 C -0.194 4.194 28 C -0.238 4.238 29 C -0.019 4.019 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.254 0.746 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.107 0.893 51 H 0.079 0.921 52 H 0.091 0.909 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.297 13.368 35.756 38.243 hybrid contribution 1.275 -2.401 0.295 2.734 sum -1.023 10.968 36.051 37.696 Atomic orbital electron populations 1.21991 0.94372 1.01133 1.01976 1.19238 0.95563 0.97189 0.90363 0.91698 1.22146 1.36178 1.12033 0.92843 0.97081 1.27617 0.97246 1.06455 0.91185 1.70943 1.38042 1.16996 1.31943 0.83440 0.76590 0.71106 0.77055 1.17987 1.15896 1.22091 1.21003 0.76707 0.85245 0.84346 1.90538 1.48101 1.22496 1.86552 1.48666 1.58864 1.21920 1.06710 1.22453 0.98931 0.83614 0.98694 1.22810 0.98688 1.01606 0.92259 1.22186 1.00086 0.94472 0.93735 0.89424 1.21598 1.04333 0.97108 0.91437 1.21337 1.02308 0.98107 0.76306 1.44739 1.72657 1.13733 1.05029 1.18327 0.76710 0.84095 0.81333 1.90907 1.54389 1.20876 1.82392 1.86309 1.83308 1.44216 1.14649 1.22382 0.95439 0.85819 0.87476 1.22469 0.98822 0.98288 1.04091 1.21886 1.03673 1.02771 0.91022 1.22475 0.94923 1.02355 1.04000 1.22340 0.98615 0.97234 0.83704 0.94656 0.89937 0.92420 0.94506 0.91081 0.90016 0.88388 0.87650 0.88852 0.89911 0.91903 0.90626 0.74602 0.91874 0.89330 0.91869 0.91279 0.88158 0.91134 0.91949 0.89286 0.92065 0.90873 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.67 71.98 0.62 -4.87 16 2 C 0.00 -0.08 1.61 -12.29 -0.02 -0.10 16 3 H 0.07 2.84 6.47 -2.39 -0.02 2.83 16 4 C -0.59 -36.46 8.76 25.60 0.22 -36.23 16 5 H 0.01 0.78 7.07 -2.91 -0.02 0.76 16 6 C -0.03 -1.77 5.41 84.66 0.46 -1.32 16 7 N -0.94 -62.07 13.70 21.45 0.29 -61.78 16 8 Si 1.10 48.86 25.19 68.60 1.73 50.58 16 9 H -0.25 -10.17 6.71 99.48 0.67 -9.50 16 10 H -0.24 -8.73 6.45 99.48 0.64 -8.09 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 C 0.54 24.94 7.06 87.66 0.62 25.56 16 13 O -0.60 -34.05 15.86 -3.03 -0.05 -34.10 16 14 N -0.63 -20.57 3.33 -811.80 -2.70 -23.27 16 15 C 0.08 1.88 6.10 86.73 0.53 2.41 16 16 C -0.12 -1.54 5.91 31.78 0.19 -1.35 16 17 C -0.09 -1.30 3.00 -9.40 -0.03 -1.32 16 18 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 19 C -0.11 -1.02 4.84 30.59 0.15 -0.87 16 20 C 0.14 1.65 5.58 86.38 0.48 2.13 16 21 N -0.70 -8.87 5.56 -590.86 -3.29 -12.16 16 22 C 0.64 11.87 8.06 129.79 1.05 12.91 16 23 O -0.59 -14.15 11.88 19.80 0.24 -13.91 16 24 O -0.37 -6.13 9.94 -55.48 -0.55 -6.68 16 25 C 0.13 1.66 1.13 -10.79 -0.01 1.64 16 26 C -0.18 -2.36 8.37 71.98 0.60 -1.76 16 27 C -0.14 -1.02 8.85 71.98 0.64 -0.38 16 28 C -0.18 -2.46 8.37 71.98 0.60 -1.86 16 29 C 0.10 2.63 6.36 86.85 0.55 3.18 16 30 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.08 2.47 5.78 -2.39 -0.01 2.45 16 32 H 0.06 2.26 3.93 -2.39 -0.01 2.25 16 33 H 0.25 16.83 8.72 -92.70 -0.81 16.02 16 34 H 0.07 1.58 7.90 -2.39 -0.02 1.56 16 35 H 0.08 1.65 6.16 -2.38 -0.01 1.64 16 36 H 0.10 0.97 7.91 -2.39 -0.02 0.95 16 37 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 0.66 7.97 -2.39 -0.02 0.64 16 39 H 0.08 0.75 8.14 -2.38 -0.02 0.74 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.90 7.75 -2.39 -0.02 0.88 16 42 H 0.42 3.36 8.58 -92.70 -0.80 2.56 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.06 1.19 5.88 -2.39 -0.01 1.17 16 46 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 48 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.06 1.21 5.88 -2.39 -0.01 1.19 16 50 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 51 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.07 1.70 8.04 -2.38 -0.02 1.68 16 53 H 0.05 1.52 8.08 -2.39 -0.02 1.50 16 Total: -1.00 -87.96 407.61 2.29 -85.67 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -0.04 Total: 17.88 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 6.65 Total: -2.24 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -5.69 Total: -97.21 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -0.36 Total: -54.69 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.73 Total: 50.58 kcal Total: -87.96 2.29 -85.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884799692.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.732 kcal (2) G-P(sol) polarization free energy of solvation -87.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds