Wall clock time and date at job start Sat Apr 11 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47144 * 2 1 4 4 C 1.50698 * 109.47063 * 120.00398 * 2 1 3 5 5 H 1.08000 * 120.00464 * 119.99644 * 4 2 1 6 6 C 1.37887 * 119.99760 * 299.99715 * 4 2 1 7 7 N 1.31511 * 119.99649 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99867 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47440 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47296 * 120.00309 * 8 6 4 11 11 H 1.48507 * 109.47106 * 239.99883 * 8 6 4 12 12 C 1.50700 * 109.47032 * 239.99996 * 2 1 3 13 13 O 1.21283 * 119.99859 * 266.52463 * 12 2 1 14 14 N 1.34772 * 120.00240 * 86.52252 * 12 2 1 15 15 C 1.47026 * 125.64756 * 354.85045 * 14 12 2 16 16 C 1.54323 * 107.27212 * 178.99467 * 15 14 12 17 17 C 1.55156 * 102.94254 * 337.80446 * 16 15 14 18 18 H 1.09001 * 111.00290 * 277.39486 * 17 16 15 19 19 C 1.52995 * 111.00492 * 153.58090 * 17 16 15 20 20 C 1.52999 * 109.47376 * 69.57963 * 19 17 16 21 21 N 1.46503 * 109.47061 * 179.97438 * 20 19 17 22 22 C 1.34777 * 119.99737 * 180.27649 * 21 20 19 23 23 O 1.21509 * 120.00285 * 359.72363 * 22 21 20 24 24 O 1.34634 * 119.99831 * 179.72931 * 22 21 20 25 25 C 1.45196 * 117.00056 * 180.02562 * 24 22 21 26 26 C 1.53004 * 109.47474 * 59.99467 * 25 24 22 27 27 C 1.52998 * 109.47336 * 179.97438 * 25 24 22 28 28 C 1.53001 * 109.47187 * 299.99655 * 25 24 22 29 29 C 1.47466 * 125.63442 * 174.86893 * 14 12 2 30 30 H 1.09005 * 109.46989 * 306.24545 * 1 2 3 31 31 H 1.09007 * 109.46876 * 66.23703 * 1 2 3 32 32 H 1.08995 * 109.47501 * 186.23806 * 1 2 3 33 33 H 0.97005 * 119.99696 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.88436 * 59.57481 * 15 14 12 35 35 H 1.09004 * 110.00675 * 298.48250 * 15 14 12 36 36 H 1.09005 * 110.71774 * 219.44203 * 16 15 14 37 37 H 1.08997 * 110.72413 * 96.16554 * 16 15 14 38 38 H 1.09005 * 109.47147 * 309.57681 * 19 17 16 39 39 H 1.09004 * 109.46827 * 189.57947 * 19 17 16 40 40 H 1.09002 * 109.46874 * 60.00143 * 20 19 17 41 41 H 1.08997 * 109.47432 * 300.00074 * 20 19 17 42 42 H 0.96997 * 119.99670 * 359.97438 * 21 20 19 43 43 H 1.09002 * 109.46821 * 59.99873 * 26 25 24 44 44 H 1.09002 * 109.47303 * 180.02562 * 26 25 24 45 45 H 1.08997 * 109.47109 * 300.00227 * 26 25 24 46 46 H 1.09004 * 109.47642 * 59.99607 * 27 25 24 47 47 H 1.08996 * 109.47679 * 179.97438 * 27 25 24 48 48 H 1.09007 * 109.47270 * 299.99487 * 27 25 24 49 49 H 1.08997 * 109.47407 * 59.99556 * 28 25 24 50 50 H 1.08996 * 109.47088 * 180.02562 * 28 25 24 51 51 H 1.09001 * 109.46559 * 300.00179 * 28 25 24 52 52 H 1.09001 * 110.35115 * 85.23190 * 29 14 12 53 53 H 1.09010 * 110.40164 * 322.90077 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.1473 -2.2865 3.6038 10 1 3.1471 -0.1859 4.8161 11 1 1.1676 -1.5867 4.8165 12 6 2.0323 -0.7104 -1.2305 13 8 2.2944 -1.8936 -1.1830 14 7 2.1902 -0.0310 -2.3836 15 6 1.8121 1.3716 -2.6104 16 6 2.2019 1.7223 -4.0619 17 6 3.2924 0.6694 -4.3929 18 1 4.2653 0.9820 -4.0134 19 6 3.3550 0.3991 -5.8974 20 6 3.9166 1.6289 -6.6137 21 7 3.9771 1.3697 -8.0544 22 6 4.4475 2.3166 -8.8902 23 8 4.8168 3.3870 -8.4494 24 8 4.5082 2.0764 -10.2135 25 6 5.0262 3.1413 -11.0537 26 6 6.4582 3.4744 -10.6302 27 6 5.0195 2.6874 -12.5147 28 6 4.1472 4.3844 -10.9014 29 6 2.7704 -0.5717 -3.6269 30 1 -0.3633 0.6076 0.8288 31 1 -0.3633 0.4141 -0.9406 32 1 -0.3634 -1.0215 0.1117 33 1 0.7095 1.1618 3.4844 34 1 2.3495 2.0174 -1.9160 35 1 0.7376 1.4948 -2.4751 36 1 2.6103 2.7314 -4.1184 37 1 1.3461 1.6135 -4.7281 38 1 2.3529 0.1873 -6.2706 39 1 4.0016 -0.4580 -6.0860 40 1 4.9187 1.8405 -6.2406 41 1 3.2702 2.4860 -6.4252 42 1 3.6827 0.5151 -8.4061 43 1 7.0844 2.5888 -10.7386 44 1 6.8469 4.2742 -11.2606 45 1 6.4634 3.7977 -9.5893 46 1 3.9995 2.4498 -12.8168 47 1 5.4079 3.4869 -13.1455 48 1 5.6460 1.8019 -12.6230 49 1 4.1523 4.7077 -9.8605 50 1 4.5358 5.1837 -11.5324 51 1 3.1271 4.1471 -11.2031 52 1 2.0056 -1.0838 -4.2107 53 1 3.5925 -1.2503 -3.3988 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884799695.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:54 Heat of formation + Delta-G solvation = -157.882151 kcal Electronic energy + Delta-G solvation = -29701.577809 eV Core-core repulsion = 25571.769267 eV Total energy + Delta-G solvation = -4129.808542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.75920 -41.00733 -39.02847 -38.27616 -36.29142 -35.79415 -35.04069 -33.72393 -32.37439 -30.65570 -29.08652 -28.33283 -28.26483 -27.28798 -25.53888 -24.11242 -23.31996 -22.72090 -21.47954 -20.80064 -20.07497 -19.11002 -18.35795 -17.95897 -17.59768 -17.31626 -17.00262 -16.67841 -16.27412 -15.91624 -15.62059 -15.55458 -15.30769 -14.98592 -14.65011 -14.47991 -14.38444 -13.95594 -13.82733 -13.52825 -13.34208 -13.27082 -13.17784 -12.99960 -12.95700 -12.86922 -12.83086 -12.64982 -12.63858 -12.52989 -12.33072 -12.29332 -12.25912 -12.09460 -11.95934 -11.59008 -11.49561 -11.35455 -11.09365 -11.06602 -10.62499 -10.33529 -10.16263 -9.52000 -8.18047 -6.28563 1.20838 1.38145 1.39965 1.53176 1.80203 1.87841 2.20238 2.45411 3.11547 3.19275 3.44513 3.67918 3.78397 3.83065 3.85449 3.98054 4.11583 4.23722 4.31725 4.37363 4.44189 4.54338 4.59455 4.64494 4.68344 4.70891 4.75498 4.79669 4.79847 4.83429 4.87457 4.91040 4.93818 4.94792 5.01935 5.06278 5.10328 5.17083 5.23656 5.29269 5.31121 5.38143 5.41071 5.43447 5.58096 5.63039 5.70552 5.89686 6.16466 6.44992 6.64487 6.78607 7.36073 7.38655 7.46892 8.88568 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.032613 B = 0.001610 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.351937 B =17388.470443 C =17506.343369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.032 3.968 3 H 0.039 0.961 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.957 3.043 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.274 1.274 12 C 0.533 3.467 13 O -0.593 6.593 14 N -0.630 5.630 15 C 0.094 3.906 16 C -0.115 4.115 17 C -0.084 4.084 18 H 0.087 0.913 19 C -0.106 4.106 20 C 0.141 3.859 21 N -0.701 5.701 22 C 0.642 3.358 23 O -0.595 6.595 24 O -0.370 6.370 25 C 0.125 3.875 26 C -0.180 4.180 27 C -0.136 4.136 28 C -0.180 4.180 29 C 0.104 3.896 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.018 0.982 33 H 0.266 0.734 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.418 0.582 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.100 0.900 48 H 0.069 0.931 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.062 0.938 52 H 0.073 0.927 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.716 7.630 -31.743 33.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.010 3.990 3 H 0.057 0.943 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.783 3.217 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.199 1.199 12 C 0.325 3.675 13 O -0.473 6.473 14 N -0.364 5.364 15 C -0.028 4.028 16 C -0.153 4.153 17 C -0.104 4.104 18 H 0.106 0.894 19 C -0.144 4.144 20 C 0.019 3.981 21 N -0.361 5.361 22 C 0.395 3.605 23 O -0.486 6.486 24 O -0.284 6.284 25 C 0.089 3.911 26 C -0.238 4.238 27 C -0.193 4.193 28 C -0.237 4.237 29 C -0.018 4.018 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.254 0.746 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.118 0.882 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.107 0.893 51 H 0.081 0.919 52 H 0.091 0.909 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.956 7.648 -31.366 32.829 hybrid contribution 0.174 -0.824 1.269 1.523 sum 6.130 6.823 -30.097 31.463 Atomic orbital electron populations 1.21473 0.95294 0.99716 1.00552 1.18763 0.95035 0.95853 0.89310 0.94334 1.21236 1.32024 1.12382 0.91231 0.93944 1.25601 0.95093 0.95710 1.01402 1.69962 1.37038 1.23436 1.24375 0.85519 0.78397 0.78575 0.79253 1.20484 1.19634 1.19903 1.21356 0.75477 0.86480 0.84198 1.90499 1.53370 1.18005 1.85456 1.48700 1.62527 1.14003 1.11160 1.22226 1.00591 0.81099 0.98914 1.22788 0.99239 1.00144 0.93134 1.22180 0.99582 0.93852 0.94799 0.89444 1.21589 1.03507 0.97337 0.91923 1.21337 1.01797 0.98807 0.76183 1.44727 1.67014 1.17656 1.06683 1.18326 0.77332 0.83605 0.81205 1.90907 1.54161 1.25647 1.77918 1.86306 1.79029 1.46576 1.16532 1.22380 0.93581 0.85172 0.89975 1.22478 0.94853 1.02897 1.03533 1.21885 1.03802 1.03341 0.90303 1.22472 0.99821 0.97486 1.03934 1.22344 0.97672 0.97025 0.84749 0.90869 0.93832 0.96238 0.92472 0.92148 0.91288 0.87985 0.88521 0.88959 0.89522 0.91808 0.90850 0.74557 0.91993 0.89280 0.91998 0.91146 0.88153 0.91216 0.91937 0.89309 0.91892 0.90859 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.45 8.86 71.98 0.64 -4.81 16 2 C 0.03 1.65 2.12 -12.29 -0.03 1.62 16 3 H 0.04 2.04 7.22 -2.39 -0.02 2.02 16 4 C -0.53 -31.48 8.33 25.60 0.21 -31.27 16 5 H 0.04 2.69 7.06 -2.91 -0.02 2.67 16 6 C 0.02 1.22 5.30 84.66 0.45 1.67 16 7 N -0.91 -51.50 11.39 21.45 0.24 -51.25 16 8 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 9 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 12 C 0.53 25.83 6.93 87.66 0.61 26.43 16 13 O -0.59 -33.10 16.15 -3.04 -0.05 -33.15 16 14 N -0.63 -22.63 3.33 -811.67 -2.70 -25.33 16 15 C 0.09 2.59 6.30 86.73 0.55 3.13 16 16 C -0.12 -1.97 5.75 31.78 0.18 -1.78 16 17 C -0.08 -1.47 3.03 -9.40 -0.03 -1.50 16 18 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 19 C -0.11 -1.16 4.83 30.59 0.15 -1.01 16 20 C 0.14 1.85 5.55 86.38 0.48 2.33 16 21 N -0.70 -9.60 5.56 -590.85 -3.29 -12.89 16 22 C 0.64 12.52 8.06 129.79 1.05 13.56 16 23 O -0.60 -14.87 11.88 19.81 0.24 -14.63 16 24 O -0.37 -6.41 9.94 -55.43 -0.55 -6.96 16 25 C 0.13 1.75 1.13 -10.79 -0.01 1.74 16 26 C -0.18 -2.58 8.37 71.98 0.60 -1.98 16 27 C -0.14 -1.09 8.85 71.98 0.64 -0.45 16 28 C -0.18 -2.53 8.37 71.98 0.60 -1.93 16 29 C 0.10 2.82 6.36 86.85 0.55 3.38 16 30 H 0.07 3.79 6.26 -2.38 -0.01 3.78 16 31 H 0.04 1.77 7.29 -2.38 -0.02 1.75 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 34 H 0.06 1.78 7.68 -2.39 -0.02 1.76 16 35 H 0.07 1.88 7.30 -2.38 -0.02 1.87 16 36 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.10 1.31 7.96 -2.39 -0.02 1.29 16 38 H 0.09 0.80 8.04 -2.38 -0.02 0.78 16 39 H 0.09 0.84 8.14 -2.38 -0.02 0.83 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.02 7.63 -2.39 -0.02 1.01 16 42 H 0.42 3.71 8.58 -92.71 -0.80 2.92 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 45 H 0.06 1.25 5.88 -2.39 -0.01 1.23 16 46 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 49 H 0.06 1.24 5.88 -2.39 -0.01 1.23 16 50 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 53 H 0.06 1.71 8.09 -2.38 -0.02 1.69 16 Total: -1.00 -76.86 416.19 2.65 -74.21 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.09 Total: 13.52 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.64 Total: 9.11 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -5.74 Total: -89.48 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -0.36 Total: -54.75 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -76.86 2.65 -74.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884799695.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.671 kcal (2) G-P(sol) polarization free energy of solvation -76.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds