Wall clock time and date at job start Sat Apr 11 2020 06:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 O 1.21285 * 120.00039 * 239.99891 * 12 2 1 14 14 N 1.34780 * 120.00249 * 59.99816 * 12 2 1 15 15 C 1.46500 * 120.00188 * 179.97438 * 14 12 2 16 16 H 1.09002 * 110.63869 * 34.30183 * 15 14 12 17 17 C 1.54318 * 110.72006 * 271.16026 * 15 14 12 18 18 N 1.47022 * 107.27092 * 219.44603 * 17 15 14 19 19 C 1.34773 * 125.64782 * 178.90728 * 18 17 15 20 20 O 1.21515 * 120.00084 * 180.02562 * 19 18 17 21 21 O 1.34631 * 120.00350 * 0.02562 * 19 18 17 22 22 C 1.45205 * 117.00403 * 180.02562 * 21 19 18 23 23 C 1.53008 * 109.47047 * 59.99413 * 22 21 19 24 24 C 1.52994 * 109.47232 * 179.97438 * 22 21 19 25 25 C 1.52996 * 109.46906 * 299.99781 * 22 21 19 26 26 C 1.47425 * 108.70146 * 358.94044 * 18 17 15 27 27 C 1.55117 * 104.94230 * 24.00391 * 26 18 17 28 28 C 1.53009 * 111.16074 * 205.13211 * 27 26 18 29 29 C 1.52996 * 110.93669 * 81.21657 * 27 26 18 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 34 34 H 0.96998 * 119.99818 * 0.02562 * 14 12 2 35 35 H 1.09008 * 109.88403 * 338.85961 * 17 15 14 36 36 H 1.09004 * 109.88469 * 100.02518 * 17 15 14 37 37 H 1.09003 * 109.46411 * 60.00766 * 23 22 21 38 38 H 1.09003 * 109.46815 * 179.97438 * 23 22 21 39 39 H 1.08997 * 109.46859 * 300.00632 * 23 22 21 40 40 H 1.08996 * 109.47662 * 59.99979 * 24 22 21 41 41 H 1.09003 * 109.47384 * 179.97438 * 24 22 21 42 42 H 1.09009 * 109.47161 * 299.99756 * 24 22 21 43 43 H 1.09004 * 109.47333 * 59.99955 * 25 22 21 44 44 H 1.08999 * 109.47386 * 179.97438 * 25 22 21 45 45 H 1.09001 * 109.47410 * 300.00207 * 25 22 21 46 46 H 1.09000 * 110.36920 * 142.97363 * 26 18 17 47 47 H 1.09000 * 110.36455 * 265.17988 * 26 18 17 48 48 H 1.08997 * 109.46928 * 172.17088 * 28 27 26 49 49 H 1.09003 * 109.46656 * 292.17308 * 28 27 26 50 50 H 1.09001 * 109.47044 * 52.17195 * 28 27 26 51 51 H 1.08998 * 109.47263 * 307.95935 * 29 27 26 52 52 H 1.09007 * 109.47268 * 67.95614 * 29 27 26 53 53 H 1.08996 * 109.47130 * 187.95213 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1954 -0.9403 -3.6508 16 1 2.2518 -2.0150 -3.4781 17 6 3.5693 -0.3834 -4.0795 18 7 3.5736 -0.3152 -5.5482 19 6 4.5882 0.1387 -6.3104 20 8 4.4811 0.1497 -7.5208 21 8 5.7205 0.5800 -5.7309 22 6 6.7711 1.0549 -6.6135 23 6 6.2484 2.2300 -7.4424 24 6 7.9695 1.5126 -5.7798 25 6 7.2020 -0.0769 -7.5484 26 6 2.2841 -0.8247 -6.0489 27 6 1.2921 -0.6272 -4.8728 28 6 0.1271 -1.6151 -4.9610 29 6 0.7830 0.8147 -4.8233 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7091 1.1614 3.4844 34 1 1.1493 0.5389 -2.5436 35 1 3.7121 0.6133 -3.6618 36 1 4.3622 -1.0483 -3.7369 37 1 5.9415 3.0364 -6.7762 38 1 7.0373 2.5868 -8.1047 39 1 5.3944 1.9043 -8.0363 40 1 8.3420 0.6758 -5.1890 41 1 8.7584 1.8687 -6.4424 42 1 7.6622 2.3191 -5.1140 43 1 6.3480 -0.4026 -8.1424 44 1 7.9903 0.2797 -8.2114 45 1 7.5743 -0.9141 -6.9580 46 1 1.9617 -0.2522 -6.9186 47 1 2.3661 -1.8820 -6.3009 48 1 -0.4752 -1.5484 -4.0549 49 1 -0.4900 -1.3728 -5.8262 50 1 0.5165 -2.6279 -5.0646 51 1 1.6307 1.4998 -4.8308 52 1 0.1524 1.0074 -5.6914 53 1 0.2030 0.9642 -3.9127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887574066.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:03 Heat of formation + Delta-G solvation = -142.759216 kcal Electronic energy + Delta-G solvation = -31655.231745 eV Core-core repulsion = 27526.078982 eV Total energy + Delta-G solvation = -4129.152763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.10234 -41.12138 -39.70374 -37.86225 -35.74831 -35.63588 -34.86124 -34.06893 -32.45961 -29.69224 -28.38182 -28.36750 -28.31529 -27.75877 -27.16681 -25.17303 -23.69524 -22.60354 -21.08582 -20.56855 -20.22729 -18.85317 -18.34254 -17.90078 -17.80036 -17.50706 -16.92580 -16.41913 -16.37378 -15.70636 -15.59837 -15.33828 -15.15642 -14.89796 -14.70035 -14.46674 -14.36228 -14.01363 -13.78033 -13.63837 -13.43925 -13.37301 -13.10495 -12.97728 -12.91442 -12.89268 -12.86768 -12.69779 -12.64184 -12.56444 -12.48262 -12.35476 -12.17739 -12.03421 -11.98131 -11.92045 -11.64519 -11.41701 -11.17217 -11.01247 -10.59362 -10.30001 -10.04873 -9.85744 -8.13412 -6.23122 1.00029 1.41506 1.42772 1.54120 1.65915 1.92175 2.27493 2.48755 2.84841 3.16605 3.23849 3.43108 3.72931 3.77628 3.80259 3.92723 3.94147 4.10280 4.25251 4.34712 4.40063 4.56340 4.60504 4.60922 4.69240 4.70874 4.74714 4.76032 4.80187 4.82663 4.84500 4.85334 4.91930 4.97993 4.99208 5.04259 5.04708 5.10002 5.13900 5.26510 5.30902 5.31579 5.41259 5.42438 5.53354 5.58751 5.77848 5.97368 6.24403 6.29224 6.73157 6.87767 7.17806 7.42083 7.55073 8.92258 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002872 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.314894 B = 9748.307417 C =11114.927687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.024 3.976 3 H 0.040 0.960 4 C -0.527 4.527 5 H 0.049 0.951 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.526 3.474 13 O -0.581 6.581 14 N -0.713 5.713 15 C 0.144 3.856 16 H 0.090 0.910 17 C 0.102 3.898 18 N -0.599 5.599 19 C 0.665 3.335 20 O -0.585 6.585 21 O -0.373 6.373 22 C 0.121 3.879 23 C -0.176 4.176 24 C -0.138 4.138 25 C -0.177 4.177 26 C 0.134 3.866 27 C -0.070 4.070 28 C -0.132 4.132 29 C -0.141 4.141 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.024 0.976 33 H 0.264 0.736 34 H 0.411 0.589 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.056 0.944 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.060 0.940 49 H 0.086 0.914 50 H 0.062 0.938 51 H 0.049 0.951 52 H 0.086 0.914 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.869 2.825 -22.032 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 H 0.058 0.942 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.778 3.222 9 H -0.202 1.202 10 H -0.201 1.201 11 H -0.203 1.203 12 C 0.315 3.685 13 O -0.460 6.460 14 N -0.368 5.368 15 C 0.038 3.962 16 H 0.108 0.892 17 C -0.023 4.023 18 N -0.340 5.340 19 C 0.421 3.579 20 O -0.476 6.476 21 O -0.288 6.288 22 C 0.085 3.915 23 C -0.233 4.233 24 C -0.195 4.195 25 C -0.234 4.234 26 C 0.014 3.986 27 C -0.071 4.071 28 C -0.190 4.190 29 C -0.199 4.199 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.105 0.895 50 H 0.081 0.919 51 H 0.068 0.932 52 H 0.105 0.895 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.398 2.312 -22.236 22.784 hybrid contribution 0.343 -0.119 1.167 1.222 sum 4.741 2.192 -21.068 21.706 Atomic orbital electron populations 1.21551 0.94889 0.99545 1.01730 1.18803 0.95465 0.95858 0.89559 0.94182 1.21301 1.31459 1.12703 0.91130 0.93283 1.25555 0.95230 0.95738 1.01321 1.69940 1.37248 1.23576 1.24234 0.85647 0.78329 0.78860 0.79363 1.20191 1.20058 1.20346 1.21552 0.77944 0.83543 0.85469 1.90524 1.39585 1.28472 1.87410 1.46061 1.54152 1.32629 1.03969 1.21875 0.91644 0.97455 0.85234 0.89234 1.22360 0.99038 1.01567 0.79313 1.47087 1.15079 1.64956 1.06881 1.17610 0.80135 0.76797 0.83399 1.90873 1.82245 1.61771 1.12694 1.86371 1.24438 1.75755 1.42260 1.22479 0.84782 0.94537 0.89721 1.22452 1.03480 0.96779 1.00618 1.21898 0.94900 1.02072 1.00602 1.22455 1.03160 0.97878 0.99925 1.22527 0.78836 1.00107 0.97150 1.22053 0.94901 0.98631 0.91533 1.21728 0.96156 0.97661 1.03445 1.21799 1.01380 0.92963 1.03718 0.91251 0.92830 0.95654 0.92663 0.74963 0.91341 0.92318 0.92328 0.88717 0.91596 0.91804 0.87418 0.91669 0.91639 0.88664 0.92480 0.88727 0.89855 0.92044 0.89544 0.91854 0.93166 0.89478 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.87 71.98 0.64 -4.53 16 2 C 0.02 1.18 2.64 -12.29 -0.03 1.15 16 3 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.53 -29.95 8.37 25.60 0.21 -29.73 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.97 16 6 C 0.02 1.14 5.30 84.66 0.45 1.59 16 7 N -0.91 -50.34 11.32 21.45 0.24 -50.10 16 8 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 C 0.53 22.77 7.15 87.66 0.63 23.39 16 13 O -0.58 -29.54 15.14 -3.05 -0.05 -29.59 16 14 N -0.71 -22.20 4.91 -436.92 -2.15 -24.35 16 15 C 0.14 3.87 2.53 46.18 0.12 3.99 16 16 H 0.09 2.73 7.52 -2.39 -0.02 2.71 16 17 C 0.10 2.87 6.34 86.73 0.55 3.42 16 18 N -0.60 -15.35 3.32 -941.69 -3.12 -18.47 16 19 C 0.66 18.85 7.93 129.79 1.03 19.88 16 20 O -0.58 -17.62 12.14 19.79 0.24 -17.38 16 21 O -0.37 -10.27 9.49 -55.40 -0.53 -10.79 16 22 C 0.12 2.53 1.13 -10.79 -0.01 2.51 16 23 C -0.18 -3.37 8.37 71.98 0.60 -2.76 16 24 C -0.14 -2.18 8.85 71.98 0.64 -1.55 16 25 C -0.18 -3.45 8.37 71.98 0.60 -2.85 16 26 C 0.13 2.67 5.85 86.93 0.51 3.18 16 27 C -0.07 -1.31 0.88 -50.72 -0.04 -1.35 16 28 C -0.13 -2.06 8.68 71.99 0.63 -1.43 16 29 C -0.14 -2.34 7.91 71.98 0.57 -1.77 16 30 H 0.07 3.38 6.07 -2.39 -0.01 3.36 16 31 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 32 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 34 H 0.41 10.83 5.51 -92.71 -0.51 10.32 16 35 H 0.07 2.02 8.03 -2.38 -0.02 2.00 16 36 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.57 5.88 -2.39 -0.01 1.55 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.06 1.59 5.88 -2.39 -0.01 1.57 16 44 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.09 1.75 7.95 -2.39 -0.02 1.73 16 47 H 0.08 1.53 7.99 -2.39 -0.02 1.51 16 48 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 51 H 0.05 0.95 7.92 -2.39 -0.02 0.94 16 52 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 53 H 0.07 1.13 6.38 -2.39 -0.02 1.12 16 Total: -1.00 -69.53 412.02 4.12 -65.40 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.38 Total: 25.64 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 7.08 Total: 13.13 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -5.03 Total: -92.92 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -0.33 Total: -57.76 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.53 4.12 -65.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887574066.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.356 kcal (2) G-P(sol) polarization free energy of solvation -69.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds