Wall clock time and date at job start Sat Apr 11 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46830 * 2 1 4 4 C 1.50705 * 109.46636 * 119.99606 * 2 1 3 5 5 H 1.07991 * 120.00032 * 120.00049 * 4 2 1 6 6 C 1.37883 * 119.99855 * 299.99401 * 4 2 1 7 7 N 1.31511 * 119.99782 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00001 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47426 * 89.99315 * 8 6 4 10 10 H 1.48500 * 109.46919 * 209.99436 * 8 6 4 11 11 H 1.48498 * 109.47135 * 329.99097 * 8 6 4 12 12 C 1.50690 * 109.47087 * 239.99485 * 2 1 3 13 13 O 1.21286 * 119.99889 * 240.00126 * 12 2 1 14 14 N 1.34770 * 120.00409 * 60.00038 * 12 2 1 15 15 C 1.46506 * 120.00334 * 179.97438 * 14 12 2 16 16 H 1.08991 * 110.88518 * 328.88452 * 15 14 12 17 17 C 1.54910 * 111.03526 * 92.78818 * 15 14 12 18 18 N 1.47425 * 104.83231 * 155.09783 * 17 15 14 19 19 C 1.34771 * 125.64767 * 156.13676 * 18 17 15 20 20 O 1.21511 * 120.00078 * 179.69166 * 19 18 17 21 21 O 1.34638 * 120.00154 * 359.69215 * 19 18 17 22 22 C 1.45200 * 116.99976 * 180.02562 * 21 19 18 23 23 C 1.52997 * 109.47590 * 59.99696 * 22 21 19 24 24 C 1.53002 * 109.46766 * 179.97438 * 22 21 19 25 25 C 1.52998 * 109.46855 * 299.99284 * 22 21 19 26 26 C 1.47026 * 108.70074 * 335.87083 * 18 17 15 27 27 C 1.54316 * 107.27365 * 1.05989 * 26 18 17 28 28 C 1.52996 * 110.72327 * 140.55544 * 27 26 18 29 29 C 1.53000 * 110.71996 * 263.82886 * 27 26 18 30 30 H 1.08997 * 109.47431 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47014 * 300.00637 * 1 2 3 32 32 H 1.09002 * 109.47021 * 60.00525 * 1 2 3 33 33 H 0.97003 * 119.99888 * 180.02562 * 7 6 4 34 34 H 0.97005 * 119.99924 * 0.02562 * 14 12 2 35 35 H 1.09001 * 110.36852 * 36.26082 * 17 15 14 36 36 H 1.08998 * 110.36449 * 273.93729 * 17 15 14 37 37 H 1.09001 * 109.46652 * 59.99858 * 23 22 21 38 38 H 1.08995 * 109.47293 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.47050 * 300.00485 * 23 22 21 40 40 H 1.09003 * 109.47376 * 59.99763 * 24 22 21 41 41 H 1.09004 * 109.46792 * 179.97438 * 24 22 21 42 42 H 1.08995 * 109.47281 * 299.99564 * 24 22 21 43 43 H 1.09004 * 109.46818 * 60.00736 * 25 22 21 44 44 H 1.09004 * 109.46989 * 180.02562 * 25 22 21 45 45 H 1.09001 * 109.47555 * 300.00814 * 25 22 21 46 46 H 1.09004 * 109.87531 * 120.47707 * 26 18 17 47 47 H 1.09000 * 109.87938 * 241.63960 * 26 18 17 48 48 H 1.09003 * 109.47103 * 61.45020 * 28 27 26 49 49 H 1.09000 * 109.47385 * 181.45314 * 28 27 26 50 50 H 1.09004 * 109.47258 * 301.45425 * 28 27 26 51 51 H 1.09002 * 109.47458 * 58.54477 * 29 27 26 52 52 H 1.09005 * 109.47376 * 178.54611 * 29 27 26 53 53 H 1.08996 * 109.47089 * 298.54558 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6992 -0.2391 2.4828 7 7 2.1371 -0.8593 3.5567 8 14 0.6249 1.2794 2.6540 9 1 -0.8028 0.8733 2.6995 10 1 0.9760 1.9955 3.9067 11 1 0.8474 2.1768 1.4919 12 6 2.0324 -0.7105 -1.2303 13 8 2.7296 -1.6966 -1.1189 14 7 1.7068 -0.2502 -2.4544 15 6 2.1956 -0.9406 -3.6506 16 1 3.1659 -1.4008 -3.4644 17 6 1.1692 -1.9901 -4.1454 18 7 1.4518 -2.1453 -5.5839 19 6 1.1525 -3.2264 -6.3310 20 8 1.4283 -3.2424 -7.5143 21 8 0.5479 -4.2885 -5.7662 22 6 0.2562 -5.4178 -6.6311 23 6 1.5594 -5.9549 -7.2259 24 6 -0.4251 -6.5203 -5.8177 25 6 -0.6730 -4.9685 -7.7605 26 6 2.1083 -0.9229 -6.0700 27 6 2.2619 0.0258 -4.8626 28 6 3.6112 0.7456 -4.9078 29 6 1.1109 1.0327 -4.8156 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.9024 -0.5280 4.4377 34 1 1.1494 0.5387 -2.5436 35 1 0.1526 -1.6264 -3.9956 36 1 1.3146 -2.9371 -3.6258 37 1 2.2213 -6.2749 -6.4212 38 1 1.3404 -6.8029 -7.8747 39 1 2.0452 -5.1696 -7.8052 40 1 -1.3536 -6.1380 -5.3936 41 1 -0.6445 -7.3679 -6.4671 42 1 0.2372 -6.8403 -5.0133 43 1 -0.1873 -4.1832 -8.3398 44 1 -0.8924 -5.8164 -8.4095 45 1 -1.6015 -4.5859 -7.3367 46 1 3.0896 -1.1662 -6.4774 47 1 1.4930 -0.4512 -6.8362 48 1 3.6704 1.3500 -5.8131 49 1 3.7089 1.3897 -4.0339 50 1 4.4156 0.0100 -4.9088 51 1 0.1629 0.4984 -4.7519 52 1 1.2253 1.6749 -3.9422 53 1 1.1243 1.6424 -5.7190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887574067.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:06 Heat of formation + Delta-G solvation = -139.030611 kcal Electronic energy + Delta-G solvation = -31709.573082 eV Core-core repulsion = 27580.582003 eV Total energy + Delta-G solvation = -4128.991078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.11114 -41.16864 -39.79368 -37.89102 -35.77405 -35.66940 -34.90355 -34.13353 -33.16670 -29.80266 -28.38227 -28.34807 -28.32302 -27.74046 -27.08274 -25.36022 -23.74654 -22.66986 -21.11132 -20.55569 -20.22824 -18.85763 -18.77324 -18.00351 -17.80675 -17.47929 -17.03216 -16.41793 -16.32526 -15.92400 -15.51821 -15.20472 -15.16525 -15.10311 -14.76676 -14.62002 -14.52782 -14.22371 -13.99640 -13.71620 -13.59535 -13.39220 -13.37303 -13.11064 -12.92655 -12.90001 -12.89121 -12.78855 -12.66036 -12.52790 -12.47462 -12.36855 -12.11312 -11.96648 -11.92581 -11.64747 -11.43375 -11.42229 -11.18660 -11.18358 -10.75426 -10.46182 -10.14031 -9.82210 -8.24273 -6.32226 0.98168 1.36170 1.42697 1.53994 1.65035 1.85138 2.21873 2.37331 2.86980 3.09700 3.22819 3.43861 3.72175 3.75997 3.78426 3.92021 3.93132 4.09242 4.16720 4.23435 4.41862 4.46151 4.55300 4.59235 4.60134 4.63888 4.68281 4.69482 4.73364 4.74083 4.82148 4.82510 4.84651 4.89535 4.92035 4.99691 5.04363 5.06438 5.09518 5.14594 5.25578 5.30142 5.34028 5.40295 5.42446 5.49096 5.54834 5.56110 6.27639 6.28526 6.68847 6.87092 7.16903 7.29228 7.50687 8.93575 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.002925 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.916819 B = 9571.424444 C =10712.419502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.007 4.007 3 H 0.073 0.927 4 C -0.521 4.521 5 H 0.028 0.972 6 C 0.005 3.995 7 N -0.955 5.955 8 Si 0.960 3.040 9 H -0.262 1.262 10 H -0.303 1.303 11 H -0.225 1.225 12 C 0.531 3.469 13 O -0.581 6.581 14 N -0.706 5.706 15 C 0.142 3.858 16 H 0.078 0.922 17 C 0.099 3.901 18 N -0.601 5.601 19 C 0.664 3.336 20 O -0.585 6.585 21 O -0.373 6.373 22 C 0.121 3.879 23 C -0.179 4.179 24 C -0.138 4.138 25 C -0.175 4.175 26 C 0.136 3.864 27 C -0.069 4.069 28 C -0.135 4.135 29 C -0.145 4.145 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.266 0.734 34 H 0.416 0.584 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.065 0.935 50 H 0.050 0.950 51 H 0.062 0.938 52 H 0.075 0.925 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 1.918 -25.881 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 H 0.091 0.909 4 C -0.559 4.559 5 H 0.047 0.953 6 C -0.192 4.192 7 N -0.595 5.595 8 Si 0.785 3.215 9 H -0.188 1.188 10 H -0.231 1.231 11 H -0.148 1.148 12 C 0.320 3.680 13 O -0.459 6.459 14 N -0.362 5.362 15 C 0.035 3.965 16 H 0.096 0.904 17 C -0.025 4.025 18 N -0.342 5.342 19 C 0.419 3.581 20 O -0.476 6.476 21 O -0.288 6.288 22 C 0.085 3.915 23 C -0.236 4.236 24 C -0.195 4.195 25 C -0.232 4.232 26 C 0.015 3.985 27 C -0.070 4.070 28 C -0.193 4.193 29 C -0.202 4.202 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.256 0.744 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.084 0.916 50 H 0.069 0.931 51 H 0.081 0.919 52 H 0.094 0.906 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.156 1.051 -26.058 27.043 hybrid contribution -0.102 0.077 0.931 0.940 sum -7.257 1.128 -25.127 26.178 Atomic orbital electron populations 1.22039 0.94397 1.01699 1.01693 1.19261 0.95415 0.97597 0.90631 0.90924 1.21122 1.31537 1.12787 0.90446 0.95346 1.26059 0.97503 1.00780 0.94818 1.70088 1.47795 1.42904 0.98749 0.85707 0.78674 0.79041 0.78115 1.18759 1.23139 1.14774 1.21098 0.78182 0.83494 0.85247 1.90596 1.39461 1.28549 1.87246 1.45827 1.54507 1.32361 1.03520 1.21958 0.96743 0.92734 0.85069 0.90351 1.22669 1.00192 1.00085 0.79599 1.47053 1.61943 1.15027 1.10187 1.17615 0.77269 0.80080 0.83086 1.90873 1.59677 1.82272 1.14821 1.86367 1.72693 1.25526 1.44187 1.22476 0.96184 0.82731 0.90099 1.22469 0.96535 1.02792 1.01779 1.21901 1.00619 0.96299 1.00666 1.22440 0.98831 1.03750 0.98182 1.22225 0.97928 0.81665 0.96681 1.21882 0.99321 0.94676 0.91093 1.21792 0.93379 1.00381 1.03708 1.21912 0.95947 0.98066 1.04302 0.93588 0.93673 0.89282 0.92501 0.74363 0.89339 0.92282 0.92769 0.88617 0.91654 0.91373 0.87425 0.92076 0.91613 0.88756 0.92032 0.90844 0.89144 0.89486 0.91641 0.93069 0.91857 0.90575 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 8.57 71.98 0.62 -4.40 16 2 C -0.01 -0.32 2.23 -12.29 -0.03 -0.35 16 3 H 0.07 2.87 7.20 -2.39 -0.02 2.86 16 4 C -0.52 -30.47 8.96 25.60 0.23 -30.25 16 5 H 0.03 1.98 7.00 -2.92 -0.02 1.96 16 6 C 0.00 0.26 5.45 84.66 0.46 0.72 16 7 N -0.96 -61.00 13.96 21.45 0.30 -60.70 16 8 Si 0.96 41.92 24.37 68.60 1.67 43.59 16 9 H -0.26 -10.71 6.87 99.48 0.68 -10.03 16 10 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 11 H -0.22 -8.25 6.53 99.48 0.65 -7.60 16 12 C 0.53 21.67 7.15 87.65 0.63 22.29 16 13 O -0.58 -30.05 15.10 -3.05 -0.05 -30.10 16 14 N -0.71 -19.30 5.00 -435.97 -2.18 -21.48 16 15 C 0.14 3.58 2.66 46.38 0.12 3.71 16 16 H 0.08 2.48 7.43 -2.39 -0.02 2.47 16 17 C 0.10 2.55 6.30 86.86 0.55 3.10 16 18 N -0.60 -14.87 3.33 -942.11 -3.13 -18.01 16 19 C 0.66 18.66 7.93 129.79 1.03 19.69 16 20 O -0.59 -17.65 12.21 19.81 0.24 -17.41 16 21 O -0.37 -10.18 9.42 -55.47 -0.52 -10.71 16 22 C 0.12 2.54 1.13 -10.79 -0.01 2.53 16 23 C -0.18 -3.63 8.37 71.98 0.60 -3.02 16 24 C -0.14 -2.20 8.85 71.98 0.64 -1.56 16 25 C -0.17 -3.23 8.37 71.98 0.60 -2.63 16 26 C 0.14 2.56 6.04 86.73 0.52 3.09 16 27 C -0.07 -1.14 0.85 -51.00 -0.04 -1.18 16 28 C -0.14 -2.03 8.49 71.98 0.61 -1.42 16 29 C -0.15 -1.67 7.54 71.98 0.54 -1.13 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.04 1.66 3.27 -2.39 -0.01 1.65 16 32 H 0.09 2.17 7.57 -2.39 -0.02 2.15 16 33 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.42 8.31 5.67 -92.70 -0.53 7.78 16 35 H 0.09 2.02 7.71 -2.39 -0.02 2.01 16 36 H 0.06 1.87 8.04 -2.39 -0.02 1.85 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.63 5.88 -2.39 -0.01 1.62 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.52 5.88 -2.38 -0.01 1.51 16 44 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.42 7.82 -2.38 -0.02 1.40 16 47 H 0.09 1.46 7.84 -2.39 -0.02 1.44 16 48 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.05 0.89 8.13 -2.38 -0.02 0.87 16 51 H 0.06 0.76 7.44 -2.39 -0.02 0.74 16 52 H 0.08 0.78 6.75 -2.38 -0.02 0.76 16 53 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -81.42 404.29 3.70 -77.73 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.29 Total: 27.91 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 7.07 Total: 9.17 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -5.01 Total: -100.19 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -0.33 Total: -58.21 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.67 Total: 43.59 kcal Total: -81.42 3.70 -77.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887574067.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.305 kcal (2) G-P(sol) polarization free energy of solvation -81.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds