Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 C 1.34779 * 119.99848 * 120.00098 * 12 2 1 15 15 O 1.21282 * 120.00232 * 0.02562 * 14 12 2 16 16 C 1.50702 * 120.00153 * 180.02562 * 14 12 2 17 17 H 1.09009 * 109.47061 * 300.00107 * 16 14 12 18 18 C 1.52999 * 109.47227 * 59.99382 * 16 14 12 19 19 C 1.53001 * 109.47149 * 185.00087 * 18 16 14 20 20 C 1.52998 * 117.50276 * 243.62534 * 19 18 16 21 21 C 1.52994 * 60.00277 * 252.50977 * 20 19 18 22 22 N 1.46498 * 109.47558 * 180.02562 * 16 14 12 23 23 C 1.34774 * 120.00491 * 154.99968 * 22 16 14 24 24 O 1.21509 * 119.99762 * 359.97438 * 23 22 16 25 25 O 1.34635 * 120.00136 * 179.97438 * 23 22 16 26 26 C 1.45201 * 117.00018 * 179.97438 * 25 23 22 27 27 C 1.52996 * 109.47107 * 59.99837 * 26 25 23 28 28 C 1.53001 * 109.47207 * 180.02562 * 26 25 23 29 29 C 1.53007 * 109.47121 * 299.99990 * 26 25 23 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 35 35 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 36 36 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 37 37 H 1.08997 * 109.47403 * 305.00224 * 18 16 14 38 38 H 1.09004 * 109.46692 * 65.00781 * 18 16 14 39 39 H 1.09004 * 115.55248 * 29.33515 * 19 18 16 40 40 H 1.09006 * 117.49510 * 359.97438 * 20 19 18 41 41 H 1.09000 * 117.50234 * 145.02055 * 20 19 18 42 42 H 1.09001 * 117.50136 * 252.50937 * 21 20 19 43 43 H 1.09007 * 117.50069 * 107.48318 * 21 20 19 44 44 H 0.97007 * 119.99751 * 334.99415 * 22 16 14 45 45 H 1.09005 * 109.46849 * 60.00440 * 27 26 25 46 46 H 1.08996 * 109.46858 * 179.97438 * 27 26 25 47 47 H 1.08995 * 109.47213 * 299.99998 * 27 26 25 48 48 H 1.09000 * 109.47334 * 59.99393 * 28 26 25 49 49 H 1.08993 * 109.47123 * 180.02562 * 28 26 25 50 50 H 1.09011 * 109.46403 * 300.00083 * 28 26 25 51 51 H 1.09003 * 109.46923 * 60.00128 * 29 26 25 52 52 H 1.08993 * 109.46994 * 179.97438 * 29 26 25 53 53 H 1.09000 * 109.47000 * 300.00349 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0866 1.1253 -1.8912 16 6 3.2951 -0.7460 -3.3140 17 1 3.9005 -1.6027 -3.0176 18 6 2.1048 -1.2264 -4.1467 19 6 2.6110 -2.0543 -5.3296 20 6 2.3434 -1.5142 -6.7359 21 6 1.5645 -2.7262 -6.2209 22 7 4.1096 0.1745 -4.1111 23 6 5.0527 -0.3086 -4.9440 24 8 5.2277 -1.5076 -5.0334 25 8 5.8008 0.5375 -5.6770 26 6 6.7978 -0.0532 -6.5519 27 6 6.1091 -0.9733 -7.5618 28 6 7.5434 1.0557 -7.2972 29 6 7.7918 -0.8642 -5.7182 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.7082 1.1609 3.4844 34 1 0.7375 -2.1444 -1.9993 35 1 2.4628 -2.5819 -1.9863 36 1 1.5295 -2.5969 -0.4708 37 1 1.4518 -1.8404 -3.5265 38 1 1.5495 -0.3648 -4.5174 39 1 3.5478 -2.5865 -5.1644 40 1 1.8063 -0.5692 -6.8183 41 1 3.1043 -1.6909 -7.4961 42 1 1.8130 -3.7003 -6.6423 43 1 0.5154 -2.5784 -5.9645 44 1 3.9701 1.1318 -4.0396 45 1 5.4010 -0.3954 -8.1558 46 1 6.8575 -1.4163 -8.2189 47 1 5.5783 -1.7632 -7.0305 48 1 8.0340 1.7109 -6.5775 49 1 8.2914 0.6123 -7.9544 50 1 6.8353 1.6338 -7.8911 51 1 7.2609 -1.6542 -5.1869 52 1 8.5399 -1.3079 -6.3751 53 1 8.2824 -0.2087 -4.9987 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896883219.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = -105.730495 kcal Electronic energy + Delta-G solvation = -32097.575338 eV Core-core repulsion = 27970.028261 eV Total energy + Delta-G solvation = -4127.547077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04684 -41.01242 -38.87120 -37.80497 -37.22613 -35.80748 -35.04380 -34.67097 -32.13844 -30.42445 -28.30008 -28.25265 -27.86198 -27.29082 -26.14022 -23.81926 -23.17162 -22.38889 -21.43380 -21.10032 -20.13574 -19.30195 -18.46691 -18.00397 -17.42837 -17.33373 -17.09757 -16.72928 -16.39588 -16.09842 -15.55246 -15.36062 -15.20211 -14.96768 -14.80342 -14.45646 -14.38335 -14.04742 -13.66716 -13.50081 -13.31152 -13.27217 -12.98947 -12.91315 -12.87418 -12.80849 -12.79270 -12.70788 -12.61490 -12.39616 -12.32248 -12.28137 -12.17998 -12.14799 -12.06796 -11.39100 -11.25620 -11.19376 -10.91594 -10.77383 -10.68058 -10.50171 -10.07927 -9.38208 -8.14752 -6.30734 1.09581 1.41957 1.43514 1.52665 1.60556 1.83310 2.25498 2.46220 2.97620 3.13927 3.16951 3.40877 3.80266 3.80722 3.86542 3.93109 4.00532 4.07410 4.15138 4.35136 4.42136 4.58476 4.64190 4.67585 4.73141 4.74009 4.76716 4.81442 4.81790 4.82696 4.88088 4.92375 4.92863 4.93186 5.03040 5.06992 5.07825 5.15534 5.24192 5.31275 5.35989 5.41826 5.48628 5.51267 5.57058 5.65679 5.67619 6.02573 6.16412 6.41471 6.71736 6.76483 7.21257 7.38011 7.42483 8.89567 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.003009 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.766661 B = 9302.471457 C =10251.913337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.263 3.737 3 H 0.012 0.988 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.284 1.284 10 H -0.281 1.281 11 H -0.261 1.261 12 N -0.588 5.588 13 C 0.071 3.929 14 C 0.494 3.506 15 O -0.591 6.591 16 C 0.167 3.833 17 H 0.116 0.884 18 C -0.101 4.101 19 C -0.153 4.153 20 C -0.182 4.182 21 C -0.168 4.168 22 N -0.694 5.694 23 C 0.660 3.340 24 O -0.572 6.572 25 O -0.374 6.374 26 C 0.125 3.875 27 C -0.176 4.176 28 C -0.137 4.137 29 C -0.181 4.181 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.119 0.881 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.410 0.590 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.104 0.896 50 H 0.068 0.932 51 H 0.066 0.934 52 H 0.092 0.908 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 -7.225 -21.784 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.210 1.210 10 H -0.206 1.206 11 H -0.185 1.185 12 N -0.317 5.317 13 C -0.071 4.071 14 C 0.282 3.718 15 O -0.473 6.473 16 C 0.059 3.941 17 H 0.134 0.866 18 C -0.140 4.140 19 C -0.171 4.171 20 C -0.219 4.219 21 C -0.205 4.205 22 N -0.353 5.353 23 C 0.414 3.586 24 O -0.462 6.462 25 O -0.289 6.289 26 C 0.089 3.911 27 C -0.233 4.233 28 C -0.194 4.194 29 C -0.238 4.238 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.137 0.863 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.247 0.753 45 H 0.079 0.921 46 H 0.108 0.892 47 H 0.089 0.911 48 H 0.082 0.918 49 H 0.123 0.877 50 H 0.087 0.913 51 H 0.085 0.915 52 H 0.111 0.889 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.012 -7.115 -21.628 23.824 hybrid contribution 0.173 0.574 1.320 1.449 sum 7.185 -6.542 -20.308 22.513 Atomic orbital electron populations 1.21867 0.96795 1.00330 1.00066 1.18573 0.91796 0.92230 0.81243 0.97051 1.21593 1.31924 1.13172 0.91120 0.91955 1.25688 0.95049 0.95623 1.01907 1.70013 1.37195 1.23863 1.24416 0.85505 0.77714 0.79328 0.78772 1.21036 1.20624 1.18493 1.48115 1.48231 1.13343 1.22035 1.22124 1.01452 0.80437 1.03101 1.20962 0.78923 0.86878 0.85084 1.90637 1.59786 1.19099 1.77777 1.20647 0.93716 0.91679 0.88018 0.86631 1.21840 0.95541 1.00091 0.96497 1.22455 1.01139 1.03020 0.90467 1.22930 1.03457 0.98229 0.97243 1.23014 0.97280 0.96948 1.03284 1.44378 1.36576 1.11365 1.42985 1.17805 0.78689 0.83672 0.78439 1.90784 1.71237 1.14368 1.69856 1.86327 1.48194 1.40230 1.54127 1.22417 0.85646 0.94781 0.88275 1.22461 1.01940 1.00188 0.98724 1.21896 1.00230 0.97244 1.00071 1.22488 0.99401 1.00890 1.01009 0.95860 0.91459 0.93224 0.92652 0.90349 0.89487 0.90755 0.87380 0.91597 0.86295 0.89695 0.89367 0.88045 0.88283 0.75350 0.92106 0.89233 0.91061 0.91817 0.87728 0.91289 0.91509 0.88909 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.13 8.97 71.98 0.65 -5.49 16 2 C 0.26 13.27 2.64 44.25 0.12 13.39 16 3 H 0.01 0.70 6.90 -2.39 -0.02 0.68 16 4 C -0.54 -28.69 7.99 25.60 0.20 -28.48 16 5 H 0.06 3.21 7.33 -2.91 -0.02 3.19 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.92 -52.07 11.32 21.45 0.24 -51.83 16 8 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 12 N -0.59 -23.63 2.75 -826.79 -2.28 -25.91 16 13 C 0.07 2.09 7.80 127.77 1.00 3.09 16 14 C 0.49 19.63 7.14 87.66 0.63 20.26 16 15 O -0.59 -28.60 15.16 -3.04 -0.05 -28.64 16 16 C 0.17 5.00 1.83 44.25 0.08 5.08 16 17 H 0.12 3.42 6.83 -2.38 -0.02 3.40 16 18 C -0.10 -2.46 4.83 30.59 0.15 -2.31 16 19 C -0.15 -3.37 4.19 -10.79 -0.05 -3.41 16 20 C -0.18 -3.70 10.18 30.59 0.31 -3.39 16 21 C -0.17 -3.03 10.25 30.59 0.31 -2.72 16 22 N -0.69 -20.79 4.93 -573.73 -2.83 -23.61 16 23 C 0.66 18.79 7.37 129.79 0.96 19.74 16 24 O -0.57 -16.47 8.47 19.81 0.17 -16.31 16 25 O -0.37 -9.80 9.94 -55.45 -0.55 -10.36 16 26 C 0.12 2.46 1.13 -10.79 -0.01 2.45 16 27 C -0.18 -3.09 8.37 71.98 0.60 -2.49 16 28 C -0.14 -1.93 8.85 71.98 0.64 -1.29 16 29 C -0.18 -3.58 8.37 71.98 0.60 -2.97 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16 32 H 0.05 2.07 7.67 -2.38 -0.02 2.05 16 33 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 34 H 0.08 1.91 6.86 -2.38 -0.02 1.89 16 35 H 0.09 2.09 6.06 -2.39 -0.01 2.07 16 36 H 0.07 2.39 7.02 -2.39 -0.02 2.37 16 37 H 0.11 2.36 4.45 -2.39 -0.01 2.35 16 38 H 0.07 1.67 7.88 -2.38 -0.02 1.65 16 39 H 0.12 3.01 5.72 -2.38 -0.01 3.00 16 40 H 0.08 1.77 8.03 -2.38 -0.02 1.75 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.41 12.90 7.90 -92.70 -0.73 12.17 16 45 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 1.57 5.88 -2.39 -0.01 1.55 16 48 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 51 H 0.07 1.65 5.88 -2.39 -0.01 1.64 16 52 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 53 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -66.44 406.99 3.55 -62.89 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: 0.18 Total: 36.32 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.63 Total: 12.84 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -4.86 Total: -101.35 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -0.43 Total: -55.31 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -66.44 3.55 -62.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896883219.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.839 kcal (2) G-P(sol) polarization free energy of solvation -66.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds