Wall clock time and date at job start Sat Apr 11 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 C 1.50694 * 109.47884 * 120.00440 * 2 1 3 5 5 H 1.08003 * 120.00316 * 119.99263 * 4 2 1 6 6 C 1.37885 * 119.99676 * 300.00068 * 4 2 1 7 7 N 1.31506 * 120.00009 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99844 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46993 * 59.99883 * 8 6 4 10 10 H 1.48504 * 109.47047 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47368 * 300.00004 * 8 6 4 12 12 N 1.46500 * 109.47004 * 240.00414 * 2 1 3 13 13 C 1.34785 * 120.00088 * 84.99709 * 12 2 1 14 14 O 1.21276 * 119.99678 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00073 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47319 * 179.97438 * 15 13 12 17 17 H 1.09001 * 110.66811 * 56.78027 * 16 15 13 18 18 C 1.54888 * 110.75789 * 293.54773 * 16 15 13 19 19 C 1.54261 * 104.19672 * 203.74163 * 18 16 15 20 20 C 1.53876 * 106.59990 * 23.60631 * 19 18 16 21 21 H 1.08998 * 110.03319 * 240.71542 * 20 19 18 22 22 N 1.46504 * 110.03266 * 119.28382 * 20 19 18 23 23 C 1.34774 * 119.99597 * 86.45674 * 22 20 19 24 24 O 1.21509 * 120.00492 * 359.97438 * 23 22 20 25 25 O 1.34639 * 120.00015 * 180.02562 * 23 22 20 26 26 C 1.45201 * 117.00381 * 179.97438 * 25 23 22 27 27 C 1.53000 * 109.46781 * 59.99785 * 26 25 23 28 28 C 1.52994 * 109.47096 * 179.97438 * 26 25 23 29 29 C 1.52996 * 109.47100 * 299.99845 * 26 25 23 30 30 C 1.54267 * 106.59870 * 0.02562 * 20 19 18 31 31 H 1.09005 * 109.46725 * 299.99317 * 1 2 3 32 32 H 1.08994 * 109.47686 * 59.99095 * 1 2 3 33 33 H 1.09000 * 109.47316 * 180.02562 * 1 2 3 34 34 H 0.96999 * 120.00310 * 180.02562 * 7 6 4 35 35 H 0.96999 * 119.99888 * 264.99838 * 12 2 1 36 36 H 1.09001 * 109.47486 * 59.99385 * 15 13 12 37 37 H 1.09005 * 109.46933 * 300.00311 * 15 13 12 38 38 H 1.09000 * 110.48622 * 85.05945 * 18 16 15 39 39 H 1.09001 * 110.59737 * 322.47590 * 18 16 15 40 40 H 1.08998 * 110.03492 * 264.32506 * 19 18 16 41 41 H 1.08999 * 110.07717 * 142.91216 * 19 18 16 42 42 H 0.96997 * 120.00453 * 266.45882 * 22 20 19 43 43 H 1.09002 * 109.47405 * 60.00202 * 27 26 25 44 44 H 1.08997 * 109.47181 * 179.97438 * 27 26 25 45 45 H 1.09000 * 109.47035 * 300.00130 * 27 26 25 46 46 H 1.08998 * 109.47287 * 60.00389 * 28 26 25 47 47 H 1.09007 * 109.47489 * 180.02562 * 28 26 25 48 48 H 1.09004 * 109.47813 * 300.00236 * 28 26 25 49 49 H 1.09000 * 109.47119 * 59.99623 * 29 26 25 50 50 H 1.08997 * 109.46814 * 179.97438 * 29 26 25 51 51 H 1.09000 * 109.46844 * 299.99967 * 29 26 25 52 52 H 1.09004 * 110.48597 * 95.06674 * 30 20 19 53 53 H 1.08994 * 110.48679 * 217.71200 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2394 2.4827 7 7 0.9437 0.8300 2.6034 8 14 2.3217 -1.1205 4.0078 9 1 3.8067 -1.1210 4.0078 10 1 1.8273 -0.4201 5.2204 11 1 1.8263 -2.5204 4.0076 12 7 2.0182 -0.6905 -1.1962 13 6 2.1469 -0.0181 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6486 -0.7285 -3.5879 16 6 2.6996 0.2545 -4.7592 17 1 3.3231 1.1140 -4.5132 18 6 1.2731 0.7073 -5.1582 19 6 1.4137 1.1473 -6.6300 20 6 2.6435 0.4131 -7.1928 21 1 3.3916 1.1349 -7.5204 22 7 2.2473 -0.4436 -8.3132 23 6 2.1839 0.0642 -9.5600 24 8 2.4548 1.2326 -9.7548 25 8 1.8193 -0.7230 -10.5897 26 6 1.7722 -0.1088 -11.9046 27 6 3.1588 0.4267 -12.2673 28 6 1.3417 -1.1506 -12.9390 29 6 0.7670 1.0446 -11.8930 30 6 3.2068 -0.4479 -6.0434 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3634 -1.0277 0.0005 34 1 0.7097 1.1616 3.4844 35 1 2.2489 -1.6317 -1.1527 36 1 1.9758 -1.5504 -3.8327 37 1 3.6478 -1.1211 -3.3988 38 1 0.9514 1.5445 -4.5388 39 1 0.5700 -0.1213 -5.0732 40 1 1.5652 2.2253 -6.6847 41 1 0.5224 0.8668 -7.1912 42 1 2.0306 -1.3762 -8.1577 43 1 3.8749 -0.3951 -12.2756 44 1 3.1236 0.8873 -13.2545 45 1 3.4658 1.1688 -11.5303 46 1 0.3540 -1.5324 -12.6808 47 1 1.3068 -0.6897 -13.9262 48 1 2.0580 -1.9722 -12.9472 49 1 1.0741 1.7868 -11.1561 50 1 0.7321 1.5059 -12.8799 51 1 -0.2208 0.6631 -11.6346 52 1 2.8177 -1.4644 -6.1021 53 1 4.2964 -0.4534 -6.0696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900432169.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:23 Heat of formation + Delta-G solvation = -167.557103 kcal Electronic energy + Delta-G solvation = -29918.718584 eV Core-core repulsion = 25788.490504 eV Total energy + Delta-G solvation = -4130.228080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.84292 -40.75799 -39.48793 -37.80919 -36.63206 -35.44104 -34.53379 -34.26189 -32.05000 -30.50171 -29.29500 -28.34520 -28.27104 -27.33286 -26.54388 -23.69953 -23.08048 -21.52670 -21.23447 -20.96805 -20.56077 -19.15585 -18.82991 -17.75528 -17.38621 -17.19277 -17.11572 -16.65991 -16.41536 -16.02129 -15.67512 -15.55887 -15.28929 -14.75234 -14.57377 -14.48913 -14.24618 -14.05549 -13.68012 -13.39160 -13.33307 -13.15981 -12.96166 -12.88998 -12.87934 -12.83531 -12.75408 -12.74899 -12.51671 -12.34729 -12.25254 -12.24200 -12.14674 -12.02348 -11.76358 -11.57936 -11.43203 -11.36056 -11.08871 -11.06594 -10.62867 -10.45230 -10.14384 -9.64588 -8.15726 -6.33334 1.20476 1.45629 1.47690 1.55480 1.79663 1.98393 2.38278 2.74527 3.14434 3.19029 3.54135 3.64576 3.77737 3.82474 3.94293 3.97348 4.13716 4.28312 4.41817 4.49252 4.54551 4.58543 4.62736 4.63271 4.73364 4.75780 4.78580 4.82532 4.85027 4.86537 4.90241 4.94539 4.94922 5.03938 5.09420 5.13297 5.16091 5.18560 5.30044 5.33430 5.39348 5.47623 5.51976 5.53396 5.65273 5.66765 5.74482 5.96169 6.13755 6.46829 6.75874 7.09128 7.35443 7.40024 7.70311 8.90181 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.039128 B = 0.001633 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.428631 B =17142.222348 C =17315.958327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.710 5.710 13 C 0.491 3.509 14 O -0.599 6.599 15 C -0.120 4.120 16 C -0.071 4.071 17 H 0.065 0.935 18 C -0.113 4.113 19 C -0.129 4.129 20 C 0.164 3.836 21 H 0.081 0.919 22 N -0.691 5.691 23 C 0.643 3.357 24 O -0.595 6.595 25 O -0.369 6.369 26 C 0.125 3.875 27 C -0.179 4.179 28 C -0.136 4.136 29 C -0.181 4.181 30 C -0.108 4.108 31 H 0.063 0.937 32 H 0.011 0.989 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.417 0.583 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.071 0.929 49 H 0.060 0.940 50 H 0.089 0.911 51 H 0.060 0.940 52 H 0.104 0.896 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 -9.410 -29.919 31.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.360 5.360 13 C 0.279 3.721 14 O -0.481 6.481 15 C -0.160 4.160 16 C -0.090 4.090 17 H 0.084 0.916 18 C -0.151 4.151 19 C -0.168 4.168 20 C 0.061 3.939 21 H 0.099 0.901 22 N -0.351 5.351 23 C 0.397 3.603 24 O -0.486 6.486 25 O -0.283 6.283 26 C 0.089 3.911 27 C -0.236 4.236 28 C -0.193 4.193 29 C -0.238 4.238 30 C -0.145 4.145 31 H 0.081 0.919 32 H 0.030 0.970 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.255 0.745 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.119 0.881 48 H 0.090 0.910 49 H 0.079 0.921 50 H 0.108 0.892 51 H 0.079 0.921 52 H 0.122 0.878 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.262 -7.907 -29.998 31.194 hybrid contribution -0.097 -0.218 1.344 1.365 sum 3.165 -8.125 -28.654 29.951 Atomic orbital electron populations 1.21875 0.98544 0.99297 0.99348 1.18272 0.90954 0.91836 0.82402 0.98754 1.21551 1.32490 1.13540 0.90871 0.90768 1.25827 0.94924 0.95601 1.02421 1.70053 1.37096 1.24003 1.24565 0.85395 0.78638 0.78713 0.77559 1.19561 1.21378 1.18790 1.46316 1.65548 1.14239 1.09874 1.21598 0.77342 0.87276 0.85852 1.90630 1.52943 1.18602 1.85938 1.21720 1.04726 0.99189 0.90350 1.21736 0.96609 0.97406 0.93241 0.91623 1.22334 0.97257 1.00942 0.94579 1.22524 0.98279 1.00028 0.95924 1.21559 0.95759 0.92183 0.84444 0.90068 1.44919 1.71538 1.15449 1.03241 1.18362 0.76426 0.83292 0.82269 1.90901 1.55564 1.17455 1.84691 1.86311 1.81586 1.43108 1.17339 1.22378 0.96594 0.94236 0.77897 1.22467 0.95491 1.02157 1.03532 1.21880 1.02555 0.97959 0.96864 1.22475 0.98530 0.98510 1.04275 1.22637 1.01961 0.99589 0.90347 0.91854 0.97021 0.94139 0.92658 0.76015 0.86271 0.86365 0.93691 0.91163 0.92559 0.91662 0.74496 0.91765 0.89298 0.92076 0.91275 0.88137 0.91012 0.92149 0.89245 0.92111 0.87772 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.70 9.26 71.98 0.67 -6.03 16 2 C 0.27 13.90 2.56 44.24 0.11 14.02 16 3 H -0.01 -0.34 7.58 -2.39 -0.02 -0.35 16 4 C -0.55 -28.71 8.73 25.60 0.22 -28.48 16 5 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.03 11.32 21.45 0.24 -52.78 16 8 Si 0.97 41.77 29.54 68.60 2.03 43.79 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 12 N -0.71 -28.20 5.07 -446.11 -2.26 -30.46 16 13 C 0.49 18.16 7.58 87.65 0.66 18.83 16 14 O -0.60 -28.14 14.19 -3.02 -0.04 -28.18 16 15 C -0.12 -2.67 5.21 29.85 0.16 -2.51 16 16 C -0.07 -1.56 2.50 -9.50 -0.02 -1.58 16 17 H 0.07 1.76 8.04 -2.39 -0.02 1.75 16 18 C -0.11 -2.87 5.58 31.67 0.18 -2.70 16 19 C -0.13 -2.91 6.59 31.32 0.21 -2.70 16 20 C 0.16 3.02 3.22 45.72 0.15 3.17 16 21 H 0.08 1.75 7.61 -2.39 -0.02 1.74 16 22 N -0.69 -11.50 5.00 -566.66 -2.83 -14.33 16 23 C 0.64 13.95 8.05 129.79 1.04 15.00 16 24 O -0.60 -16.29 11.56 19.81 0.23 -16.06 16 25 O -0.37 -6.98 9.94 -55.48 -0.55 -7.53 16 26 C 0.13 1.92 1.13 -10.80 -0.01 1.91 16 27 C -0.18 -2.73 8.37 71.98 0.60 -2.12 16 28 C -0.14 -1.22 8.85 71.98 0.64 -0.59 16 29 C -0.18 -2.92 8.37 71.98 0.60 -2.32 16 30 C -0.11 -1.51 5.97 31.68 0.19 -1.32 16 31 H 0.06 3.55 6.07 -2.38 -0.01 3.53 16 32 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.40 13.13 8.54 -92.71 -0.79 12.33 16 36 H 0.12 1.96 8.10 -2.39 -0.02 1.94 16 37 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.04 1.50 7.06 -2.39 -0.02 1.49 16 39 H 0.07 1.64 8.02 -2.39 -0.02 1.62 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.47 7.92 -2.39 -0.02 1.45 16 42 H 0.42 4.68 8.45 -92.71 -0.78 3.89 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 46 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 49 H 0.06 1.35 5.88 -2.39 -0.01 1.34 16 50 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.10 0.94 7.63 -2.38 -0.02 0.92 16 53 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -73.62 415.74 1.98 -71.63 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -0.67 Total: 30.27 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.84 Total: 3.66 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -4.85 Total: -97.57 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.37 Total: -51.78 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -73.62 1.98 -71.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900432169.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.924 kcal (2) G-P(sol) polarization free energy of solvation -73.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds