Wall clock time and date at job start Sat Apr 11 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47076 * 2 1 4 4 C 1.50700 * 109.47081 * 120.00523 * 2 1 3 5 5 H 1.07995 * 120.00155 * 120.00468 * 4 2 1 6 6 C 1.37877 * 119.99498 * 299.99473 * 4 2 1 7 7 N 1.31516 * 119.99702 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00282 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47468 * 89.99590 * 8 6 4 10 10 H 1.48508 * 109.47085 * 209.99916 * 8 6 4 11 11 H 1.48501 * 109.47027 * 329.99343 * 8 6 4 12 12 C 1.50706 * 109.47018 * 240.00082 * 2 1 3 13 13 O 1.21281 * 120.00167 * 274.93302 * 12 2 1 14 14 N 1.34777 * 119.99838 * 94.93707 * 12 2 1 15 15 C 1.48150 * 127.83834 * 354.86507 * 14 12 2 16 16 C 1.54382 * 104.61811 * 219.58846 * 15 14 12 17 17 H 1.09001 * 110.34035 * 95.00493 * 16 15 14 18 18 N 1.46495 * 110.34580 * 217.26399 * 16 15 14 19 19 C 1.34781 * 120.00255 * 273.55376 * 18 16 15 20 20 O 1.21508 * 119.99477 * 359.97438 * 19 18 16 21 21 O 1.34630 * 120.00318 * 180.02562 * 19 18 16 22 22 C 1.45203 * 117.00371 * 179.97438 * 21 19 18 23 23 C 1.53006 * 109.46884 * 59.99686 * 22 21 19 24 24 C 1.52996 * 109.47501 * 179.97438 * 22 21 19 25 25 C 1.53001 * 109.47011 * 299.99860 * 22 21 19 26 26 C 1.54287 * 104.96310 * 336.13989 * 16 15 14 27 27 C 1.52998 * 110.34678 * 118.86765 * 26 16 15 28 28 C 1.53001 * 110.34039 * 241.02276 * 26 16 15 29 29 C 1.48145 * 127.83893 * 174.87389 * 14 12 2 30 30 H 1.09001 * 109.47322 * 185.28138 * 1 2 3 31 31 H 1.08997 * 109.47294 * 305.28284 * 1 2 3 32 32 H 1.08999 * 109.47215 * 65.28628 * 1 2 3 33 33 H 0.97002 * 120.00399 * 180.02562 * 7 6 4 34 34 H 1.09003 * 110.39995 * 100.80462 * 15 14 12 35 35 H 1.08995 * 110.40373 * 338.38071 * 15 14 12 36 36 H 0.96996 * 120.00286 * 93.54306 * 18 16 15 37 37 H 1.09002 * 109.47120 * 60.00273 * 23 22 21 38 38 H 1.09000 * 109.47055 * 180.02562 * 23 22 21 39 39 H 1.09001 * 109.47084 * 300.00235 * 23 22 21 40 40 H 1.09002 * 109.46730 * 59.99790 * 24 22 21 41 41 H 1.08995 * 109.47457 * 180.02562 * 24 22 21 42 42 H 1.09002 * 109.47235 * 300.00175 * 24 22 21 43 43 H 1.09001 * 109.47147 * 59.99649 * 25 22 21 44 44 H 1.08995 * 109.46995 * 179.97438 * 25 22 21 45 45 H 1.09002 * 109.46982 * 300.00064 * 25 22 21 46 46 H 1.09004 * 109.46579 * 59.99901 * 27 26 16 47 47 H 1.09000 * 109.46910 * 179.97438 * 27 26 16 48 48 H 1.08997 * 109.47458 * 300.00192 * 27 26 16 49 49 H 1.09000 * 109.47166 * 59.99543 * 28 26 16 50 50 H 1.08998 * 109.47490 * 179.97438 * 28 26 16 51 51 H 1.09004 * 109.47324 * 300.00064 * 28 26 16 52 52 H 1.09001 * 110.40199 * 21.62588 * 29 14 12 53 53 H 1.08998 * 110.50893 * 259.24723 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9760 1.9950 3.9069 11 1 0.8472 2.1765 1.4921 12 6 2.0323 -0.7104 -1.2305 13 8 2.1493 -1.9176 -1.2286 14 7 2.3516 -0.0042 -2.3332 15 6 2.1794 1.4492 -2.5630 16 6 1.7139 1.5590 -4.0309 17 1 0.6262 1.6077 -4.0808 18 7 2.3073 2.7380 -4.6665 19 6 1.7020 3.9375 -4.5599 20 8 0.6639 4.0409 -3.9369 21 8 2.2470 5.0210 -5.1444 22 6 1.5402 6.2798 -4.9886 23 6 1.4342 6.6245 -3.5017 24 6 2.3054 7.3877 -5.7152 25 6 0.1366 6.1537 -5.5843 26 6 2.2247 0.2703 -4.7083 27 6 1.0500 -0.5498 -5.2453 28 6 3.1946 0.6133 -5.8408 29 6 2.9542 -0.5053 -3.5904 30 1 -0.3634 -1.0233 0.0946 31 1 -0.3634 0.5936 0.8389 32 1 -0.3633 0.4296 -0.9335 33 1 1.9034 -0.5280 4.4375 34 1 3.1266 1.9706 -2.4246 35 1 1.4209 1.8527 -1.8924 36 1 3.1358 2.6555 -5.1640 37 1 2.4342 6.7143 -3.0773 38 1 0.9033 7.5692 -3.3847 39 1 0.8893 5.8352 -2.9837 40 1 2.3813 7.1422 -6.7745 41 1 1.7752 8.3327 -5.5978 42 1 3.3053 7.4774 -5.2905 43 1 -0.4084 5.3645 -5.0663 44 1 -0.3941 7.0985 -5.4669 45 1 0.2121 5.9081 -6.6436 46 1 0.4983 0.0414 -5.9763 47 1 1.4265 -1.4555 -5.7207 48 1 0.3884 -0.8192 -4.4221 49 1 4.0445 1.1636 -5.4372 50 1 3.5466 -0.3061 -6.3087 51 1 2.6840 1.2268 -6.5832 52 1 2.7800 -1.5762 -3.6948 53 1 4.0226 -0.2907 -3.6138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927902159.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:28 Heat of formation + Delta-G solvation = -132.924961 kcal Electronic energy + Delta-G solvation = -32036.571322 eV Core-core repulsion = 27907.845005 eV Total energy + Delta-G solvation = -4128.726318 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08177 -41.21115 -39.61856 -37.91981 -35.87196 -35.62965 -34.87002 -34.17405 -33.21919 -29.81161 -28.32401 -28.31345 -28.23998 -27.74975 -27.25884 -25.03676 -24.00772 -22.83019 -21.18520 -20.38228 -19.92897 -19.21783 -18.90878 -17.82591 -17.63450 -17.24922 -17.06315 -16.84554 -16.03022 -15.97972 -15.71139 -15.39291 -15.13636 -15.10408 -14.67807 -14.61008 -14.48124 -14.16100 -14.05731 -13.65018 -13.45867 -13.30726 -13.18925 -13.15664 -12.97111 -12.89370 -12.85075 -12.81087 -12.62363 -12.59143 -12.49020 -12.27629 -12.24325 -11.98869 -11.91332 -11.67844 -11.55698 -11.34166 -11.32999 -11.07675 -10.84508 -10.58721 -10.31221 -9.69905 -8.34444 -6.41957 1.10143 1.29341 1.33666 1.44717 1.71638 1.79299 2.02108 2.27791 2.99189 3.11926 3.26601 3.46287 3.76106 3.80177 3.84814 3.90583 3.99630 4.04409 4.15695 4.23946 4.33287 4.49576 4.53321 4.58579 4.62189 4.65926 4.66707 4.68869 4.75090 4.79129 4.81729 4.83824 4.86428 4.90470 4.91301 4.93333 4.98278 5.08618 5.12882 5.20284 5.28608 5.31167 5.33201 5.33526 5.40030 5.44279 5.50722 5.62229 6.17911 6.41069 6.48414 6.69146 7.17971 7.33048 7.37231 8.83107 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.003659 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.469000 B = 7651.054046 C = 9597.466912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.001 3.999 3 H 0.056 0.944 4 C -0.518 4.518 5 H 0.026 0.974 6 C 0.016 3.984 7 N -0.946 5.946 8 Si 0.953 3.047 9 H -0.262 1.262 10 H -0.291 1.291 11 H -0.239 1.239 12 C 0.554 3.446 13 O -0.581 6.581 14 N -0.628 5.628 15 C 0.086 3.914 16 C 0.169 3.831 17 H 0.097 0.903 18 N -0.688 5.688 19 C 0.645 3.355 20 O -0.590 6.590 21 O -0.364 6.364 22 C 0.127 3.873 23 C -0.184 4.184 24 C -0.135 4.135 25 C -0.180 4.180 26 C -0.071 4.071 27 C -0.135 4.135 28 C -0.141 4.141 29 C 0.104 3.896 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.270 0.730 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.421 0.579 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.074 0.926 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.071 0.929 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 18.292 -27.310 32.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 H 0.074 0.926 4 C -0.556 4.556 5 H 0.045 0.955 6 C -0.182 4.182 7 N -0.585 5.585 8 Si 0.777 3.223 9 H -0.187 1.187 10 H -0.218 1.218 11 H -0.163 1.163 12 C 0.345 3.655 13 O -0.460 6.460 14 N -0.362 5.362 15 C -0.038 4.038 16 C 0.063 3.937 17 H 0.115 0.885 18 N -0.351 5.351 19 C 0.399 3.601 20 O -0.480 6.480 21 O -0.279 6.279 22 C 0.091 3.909 23 C -0.241 4.241 24 C -0.192 4.192 25 C -0.237 4.237 26 C -0.072 4.072 27 C -0.192 4.192 28 C -0.198 4.198 29 C -0.018 4.018 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.263 0.737 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.056 0.944 49 H 0.092 0.908 50 H 0.100 0.900 51 H 0.098 0.902 52 H 0.090 0.910 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.565 17.719 -26.754 32.095 hybrid contribution -0.028 -0.105 1.021 1.027 sum -0.593 17.614 -25.733 31.190 Atomic orbital electron populations 1.21947 0.95008 1.01481 1.00935 1.19203 0.94994 0.97028 0.90885 0.92569 1.20917 1.32134 1.12438 0.90159 0.95514 1.25887 0.97104 1.00391 0.94775 1.70043 1.47204 1.42523 0.98741 0.85799 0.79096 0.79322 0.78041 1.18738 1.21822 1.16290 1.20677 0.75101 0.86576 0.83169 1.90561 1.55507 1.16435 1.83474 1.48951 1.62906 1.09563 1.14815 1.22932 1.02371 0.81023 0.97474 1.21705 0.98756 0.83293 0.89897 0.88541 1.44858 1.29085 1.04092 1.57096 1.18317 0.81970 0.81917 0.77901 1.90933 1.25228 1.85535 1.46341 1.86302 1.53609 1.17136 1.70855 1.22377 0.92500 0.79489 0.96567 1.22507 1.02901 1.03591 0.95110 1.21878 1.00813 0.95772 1.00762 1.22472 0.95667 1.04285 1.01267 1.21700 0.97480 0.92710 0.95340 1.21843 0.96493 1.00222 1.00648 1.21858 0.97999 1.03606 0.96378 1.22671 0.97755 0.99653 0.81738 0.93409 0.93217 0.91252 0.92109 0.89792 0.90522 0.73733 0.92085 0.89341 0.92095 0.90809 0.88256 0.91273 0.91982 0.89429 0.91539 0.90677 0.90666 0.94388 0.90765 0.90027 0.90181 0.91004 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.97 8.58 71.98 0.62 -5.36 16 2 C 0.00 0.03 1.69 -12.29 -0.02 0.01 16 3 H 0.06 2.60 6.07 -2.39 -0.01 2.59 16 4 C -0.52 -31.87 8.90 25.60 0.23 -31.64 16 5 H 0.03 1.90 7.50 -2.91 -0.02 1.88 16 6 C 0.02 0.96 5.45 84.65 0.46 1.42 16 7 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 8 Si 0.95 45.01 24.32 68.60 1.67 46.67 16 9 H -0.26 -11.72 6.92 99.48 0.69 -11.03 16 10 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.24 -10.19 6.53 99.48 0.65 -9.55 16 12 C 0.55 25.80 6.90 87.66 0.60 26.40 16 13 O -0.58 -31.91 16.37 -3.03 -0.05 -31.96 16 14 N -0.63 -21.53 3.32 -807.96 -2.68 -24.21 16 15 C 0.09 2.40 6.30 86.53 0.55 2.94 16 16 C 0.17 3.54 2.99 45.90 0.14 3.68 16 17 H 0.10 2.30 7.22 -2.39 -0.02 2.28 16 18 N -0.69 -11.90 4.60 -565.81 -2.60 -14.50 16 19 C 0.65 14.23 8.05 129.79 1.04 15.27 16 20 O -0.59 -16.56 11.58 19.81 0.23 -16.33 16 21 O -0.36 -6.93 9.94 -55.39 -0.55 -7.48 16 22 C 0.13 2.04 1.13 -10.79 -0.01 2.03 16 23 C -0.18 -3.29 8.37 71.98 0.60 -2.69 16 24 C -0.14 -1.30 8.85 71.98 0.64 -0.67 16 25 C -0.18 -2.84 8.37 71.98 0.60 -2.24 16 26 C -0.07 -1.25 1.03 -51.27 -0.05 -1.30 16 27 C -0.13 -2.37 8.24 71.98 0.59 -1.78 16 28 C -0.14 -1.40 7.10 71.98 0.51 -0.89 16 29 C 0.10 2.65 6.16 86.53 0.53 3.18 16 30 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.05 2.15 3.42 -2.39 -0.01 2.14 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 34 H 0.08 2.14 8.06 -2.39 -0.02 2.12 16 35 H 0.08 2.37 7.15 -2.39 -0.02 2.35 16 36 H 0.42 5.01 5.91 -92.71 -0.55 4.46 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 1.36 5.88 -2.39 -0.01 1.34 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 47 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.07 0.58 6.96 -2.39 -0.02 0.57 16 50 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 51 H 0.08 0.63 7.73 -2.38 -0.02 0.61 16 52 H 0.07 2.07 7.57 -2.39 -0.02 2.05 16 53 H 0.09 1.91 7.83 -2.39 -0.02 1.89 16 Total: -1.00 -81.86 404.08 3.62 -78.24 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.28 Total: 22.09 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 7.03 Total: 8.38 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -4.98 Total: -99.61 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -0.37 Total: -55.77 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.67 Total: 46.67 kcal Total: -81.86 3.62 -78.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927902159.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.687 kcal (2) G-P(sol) polarization free energy of solvation -81.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds