Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99950 * 2 1 4 4 C 1.53001 * 109.47358 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.47116 * 305.00305 * 4 3 2 6 6 C 1.53000 * 109.47056 * 65.00068 * 4 3 2 7 7 C 1.50701 * 109.47518 * 185.00001 * 4 3 2 8 8 O 1.21281 * 119.99724 * 0.02562 * 7 4 3 9 9 N 1.34773 * 120.00000 * 179.97438 * 7 4 3 10 10 C 1.46502 * 119.99675 * 179.97438 * 9 7 4 11 11 H 1.09000 * 109.52943 * 34.91311 * 10 9 7 12 12 C 1.53193 * 109.50249 * 274.82503 * 10 9 7 13 13 N 1.46919 * 108.81078 * 185.38671 * 12 10 9 14 14 C 1.36945 * 120.63596 * 233.60280 * 13 12 10 15 15 H 1.07998 * 119.99652 * 152.61912 * 14 13 12 16 16 C 1.38814 * 120.00043 * 332.62429 * 14 13 12 17 17 N 1.31612 * 119.99768 * 159.33530 * 16 14 13 18 18 Si 1.86801 * 119.99704 * 339.33794 * 16 14 13 19 19 H 1.48500 * 109.47192 * 92.96265 * 18 16 14 20 20 H 1.48504 * 109.46893 * 212.96020 * 18 16 14 21 21 H 1.48497 * 109.47209 * 332.95898 * 18 16 14 22 22 C 1.46949 * 118.72699 * 53.62374 * 13 12 10 23 23 C 1.53085 * 108.77081 * 306.52218 * 22 13 12 24 24 C 1.53070 * 109.52977 * 174.67105 * 23 22 13 25 25 C 1.53117 * 109.15724 * 176.74934 * 24 23 22 26 26 O 1.42902 * 109.40746 * 302.51744 * 25 24 23 27 27 C 1.42911 * 114.13247 * 61.17798 * 26 25 24 28 28 C 1.53094 * 109.48689 * 294.38918 * 23 22 13 29 29 C 1.52947 * 109.48640 * 54.49961 * 23 22 13 30 30 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47144 * 299.99838 * 1 2 3 32 32 H 1.08994 * 109.47015 * 60.00137 * 1 2 3 33 33 H 1.09005 * 109.46919 * 60.00164 * 3 2 1 34 34 H 1.08995 * 109.47484 * 300.00229 * 3 2 1 35 35 H 1.08999 * 109.47440 * 180.02562 * 6 4 3 36 36 H 1.09007 * 109.46774 * 300.00347 * 6 4 3 37 37 H 1.08995 * 109.47113 * 59.99828 * 6 4 3 38 38 H 0.97002 * 120.00077 * 0.02562 * 9 7 4 39 39 H 1.09009 * 109.58145 * 305.18502 * 12 10 9 40 40 H 1.09007 * 109.57996 * 65.44827 * 12 10 9 41 41 H 0.97001 * 120.00000 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.58720 * 66.30811 * 22 13 12 43 43 H 1.09001 * 109.58504 * 186.59077 * 22 13 12 44 44 H 1.09002 * 109.51832 * 296.64745 * 24 23 22 45 45 H 1.08993 * 109.52582 * 56.84106 * 24 23 22 46 46 H 1.08997 * 109.47859 * 182.54106 * 25 24 23 47 47 H 1.08997 * 109.48565 * 62.50023 * 25 24 23 48 48 H 1.08999 * 109.48073 * 178.83538 * 27 26 25 49 49 H 1.09004 * 109.48498 * 58.78669 * 27 26 25 50 50 H 1.08998 * 109.52703 * 303.11449 * 28 23 22 51 51 H 1.09007 * 109.52227 * 63.31272 * 28 23 22 52 52 H 1.08996 * 109.45693 * 178.73779 * 29 23 22 53 53 H 1.09000 * 109.45809 * 58.78179 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9963 0.5365 -1.3064 7 6 4.1479 2.5561 0.1245 8 8 3.4347 3.5337 0.2048 9 7 5.4882 2.6959 0.1470 10 6 6.0836 4.0292 0.2668 11 1 5.4574 4.6517 0.9059 12 6 6.1916 4.6677 -1.1215 13 7 6.9063 5.9456 -1.0009 14 6 6.3578 7.1009 -1.4908 15 1 6.6179 8.0516 -1.0494 16 6 5.4675 7.0498 -2.5546 17 7 4.6409 8.0512 -2.7695 18 14 5.4429 5.5599 -3.6811 19 1 4.4323 4.5873 -3.1934 20 1 5.0934 5.9875 -5.0597 21 1 6.7832 4.9207 -3.6859 22 6 8.2211 5.9604 -0.3448 23 6 8.0917 5.3053 1.0327 24 6 9.4754 5.1911 1.6771 25 6 9.3272 4.6101 3.0860 26 8 8.4539 5.4414 3.8530 27 6 7.1307 5.5448 3.3230 28 6 7.1904 6.1640 1.9239 29 6 7.4812 3.9113 0.8794 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6886 1.8464 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 5.0828 0.4501 -1.3058 36 1 3.5532 -0.4554 -1.3960 37 1 3.6809 1.1526 -2.1484 38 1 6.0586 1.9140 0.0831 39 1 6.7417 4.0029 -1.7876 40 1 5.1929 4.8417 -1.5223 41 1 4.0185 8.0154 -3.5126 42 1 8.9371 5.4029 -0.9488 43 1 8.5616 6.9897 -0.2319 44 1 10.1039 4.5338 1.0762 45 1 9.9322 6.1790 1.7366 46 1 10.3046 4.5686 3.5667 47 1 8.9099 3.6051 3.0228 48 1 6.5265 6.1761 3.9744 49 1 6.6846 4.5520 3.2625 50 1 7.5974 7.1730 1.9891 51 1 6.1872 6.2014 1.4991 52 1 7.4100 3.4366 1.8580 53 1 8.1135 3.3076 0.2283 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099572100.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -136.309051 kcal Electronic energy + Delta-G solvation = -32642.110910 eV Core-core repulsion = 28513.237847 eV Total energy + Delta-G solvation = -4128.873063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.80834 -40.80468 -38.95297 -38.45504 -35.96268 -35.39444 -34.74430 -33.36388 -32.03735 -31.00912 -28.89927 -28.31329 -27.28865 -26.74175 -24.88642 -24.73413 -24.47925 -22.84105 -22.04427 -21.19898 -19.36475 -18.89387 -18.37558 -17.80440 -17.24237 -17.09527 -16.85786 -16.82383 -16.67241 -16.14711 -15.91531 -15.79458 -15.71900 -15.30511 -15.15062 -15.01597 -14.86776 -14.52754 -14.17640 -13.98230 -13.57638 -13.49667 -13.37394 -13.22805 -13.14049 -12.81857 -12.73420 -12.51675 -12.47162 -12.35923 -12.17901 -12.16425 -11.94104 -11.83574 -11.74366 -11.66044 -11.10520 -11.06456 -10.89260 -10.78124 -10.72690 -10.27977 -10.19000 -8.92456 -8.22028 -5.52316 1.23199 1.28683 1.38492 1.54557 1.92759 2.36049 2.82755 3.03571 3.04876 3.32555 3.54368 3.63346 3.77214 3.81492 3.85152 3.98894 4.06783 4.17210 4.18062 4.27082 4.29753 4.33416 4.40718 4.43275 4.45232 4.50558 4.59841 4.60208 4.69638 4.72146 4.78869 4.80150 4.84660 4.84856 4.90558 4.91796 4.93401 4.97463 5.05502 5.12522 5.19201 5.23553 5.27583 5.40488 5.50021 5.50958 5.82511 6.06507 6.08249 6.33876 6.51620 6.86719 7.23484 7.58353 7.96838 8.97851 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008723 B = 0.004695 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.068966 B = 5962.046207 C = 8142.311522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.081 3.919 4 C -0.098 4.098 5 H 0.137 0.863 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.587 6.587 9 N -0.707 5.707 10 C 0.136 3.864 11 H 0.062 0.938 12 C 0.120 3.880 13 N -0.609 5.609 14 C -0.241 4.241 15 H 0.053 0.947 16 C -0.033 4.033 17 N -0.955 5.955 18 Si 0.944 3.056 19 H -0.296 1.296 20 H -0.311 1.311 21 H -0.250 1.250 22 C 0.154 3.846 23 C -0.065 4.065 24 C -0.134 4.134 25 C 0.057 3.943 26 O -0.400 6.400 27 C 0.069 3.931 28 C -0.135 4.135 29 C -0.101 4.101 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.036 0.964 38 H 0.418 0.582 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.259 0.741 42 H 0.046 0.954 43 H 0.051 0.949 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.112 0.888 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.057 0.943 50 H 0.051 0.949 51 H 0.050 0.950 52 H 0.089 0.911 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.595 -20.976 10.440 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.004 3.996 4 C -0.119 4.119 5 H 0.155 0.845 6 C -0.195 4.195 7 C 0.297 3.703 8 O -0.466 6.466 9 N -0.359 5.359 10 C 0.029 3.971 11 H 0.081 0.919 12 C -0.006 4.006 13 N -0.333 5.333 14 C -0.371 4.371 15 H 0.071 0.929 16 C -0.228 4.228 17 N -0.601 5.601 18 Si 0.774 3.226 19 H -0.224 1.224 20 H -0.240 1.240 21 H -0.174 1.174 22 C 0.030 3.970 23 C -0.067 4.067 24 C -0.172 4.172 25 C -0.019 4.019 26 O -0.319 6.319 27 C -0.007 4.007 28 C -0.173 4.173 29 C -0.139 4.139 30 H 0.128 0.872 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.256 0.744 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.085 0.915 46 H 0.130 0.870 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.068 0.932 52 H 0.107 0.893 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.190 -20.279 10.562 23.446 hybrid contribution -1.025 0.359 -1.446 1.809 sum 4.165 -19.920 9.116 22.299 Atomic orbital electron populations 1.22952 0.79445 1.04211 1.00513 1.87747 1.21346 1.26997 1.95554 1.22111 0.92603 0.84431 1.00451 1.21157 0.94297 0.92767 1.03674 0.84534 1.21754 1.02855 1.01488 0.93414 1.21096 0.82823 0.91467 0.74888 1.90767 1.62125 1.42742 1.50987 1.45860 1.06271 1.09744 1.74039 1.21401 0.95646 0.83205 0.96830 0.91937 1.21640 0.95275 0.87473 0.96246 1.44292 1.17658 1.03430 1.67937 1.18809 1.21852 0.86612 1.09845 0.92881 1.25858 0.98066 0.99184 0.99658 1.69965 1.22713 1.35247 1.32185 0.85946 0.78524 0.80268 0.77872 1.22378 1.23972 1.17362 1.21212 0.85216 0.99223 0.91374 1.20883 0.95917 0.94659 0.95226 1.22131 0.95042 1.02930 0.97107 1.22813 0.94848 0.93371 0.90876 1.87884 1.22154 1.70593 1.51261 1.22522 0.84223 1.00272 0.93703 1.22069 1.00187 0.99120 0.95922 1.21806 0.93132 0.97032 1.01921 0.87208 0.93547 0.94057 0.93274 0.94526 0.89653 0.89195 0.94465 0.74351 0.94499 0.94785 0.93227 0.93613 0.93071 0.88332 0.91523 0.87033 0.91581 0.89304 0.92442 0.93056 0.93150 0.89259 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -8.86 10.24 -148.98 -1.53 -10.39 16 3 C 0.08 2.10 4.67 71.98 0.34 2.44 16 4 C -0.10 -2.20 2.96 -11.54 -0.03 -2.23 16 5 H 0.14 2.21 8.14 -2.38 -0.02 2.19 16 6 C -0.14 -2.63 8.99 71.98 0.65 -1.98 16 7 C 0.51 15.90 7.12 87.66 0.62 16.53 16 8 O -0.59 -25.45 15.58 -3.03 -0.05 -25.49 16 9 N -0.71 -18.55 4.97 -442.14 -2.20 -20.74 16 10 C 0.14 4.49 2.27 45.07 0.10 4.59 16 11 H 0.06 2.55 5.71 -2.39 -0.01 2.53 16 12 C 0.12 5.14 3.78 86.36 0.33 5.47 16 13 N -0.61 -28.26 2.28 -699.22 -1.59 -29.86 16 14 C -0.24 -14.00 10.04 84.03 0.84 -13.15 16 15 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 16 C -0.03 -2.01 5.23 84.86 0.44 -1.56 16 17 N -0.95 -62.98 13.97 21.65 0.30 -62.68 16 18 Si 0.94 49.35 24.35 68.60 1.67 51.02 16 19 H -0.30 -15.67 6.62 99.48 0.66 -15.01 16 20 H -0.31 -16.41 7.11 99.48 0.71 -15.71 16 21 H -0.25 -11.94 6.63 99.48 0.66 -11.28 16 22 C 0.15 5.53 5.20 86.32 0.45 5.98 16 23 C -0.06 -1.78 0.51 -52.12 -0.03 -1.81 16 24 C -0.13 -2.70 4.92 30.66 0.15 -2.55 16 25 C 0.06 1.03 6.57 72.02 0.47 1.50 16 26 O -0.40 -10.02 10.76 -148.98 -1.60 -11.63 16 27 C 0.07 1.83 6.57 72.02 0.47 2.30 16 28 C -0.14 -4.36 4.48 30.66 0.14 -4.23 16 29 C -0.10 -2.41 3.63 30.60 0.11 -2.30 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 1.36 7.95 -2.38 -0.02 1.34 16 34 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.20 7.57 -2.39 -0.02 1.18 16 36 H 0.09 1.48 7.82 -2.38 -0.02 1.46 16 37 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.42 6.98 8.02 -92.71 -0.74 6.24 16 39 H 0.04 1.48 7.08 -2.38 -0.02 1.47 16 40 H 0.03 1.78 4.50 -2.38 -0.01 1.77 16 41 H 0.26 16.37 8.31 -92.71 -0.77 15.59 16 42 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.05 1.96 7.93 -2.39 -0.02 1.95 16 44 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 0.98 6.59 -2.39 -0.02 0.96 16 48 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 49 H 0.06 1.39 6.64 -2.39 -0.02 1.38 16 50 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.05 2.03 5.92 -2.38 -0.01 2.02 16 52 H 0.09 1.71 5.03 -2.39 -0.01 1.70 16 53 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -80.99 393.42 1.37 -79.62 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.06 Total: 19.47 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 6.30 Total: 10.67 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -3.49 Total: -113.28 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -3.18 Total: -47.51 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 1.67 Total: 51.02 kcal Total: -80.99 1.37 -79.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099572100.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.689 kcal (2) G-P(sol) polarization free energy of solvation -80.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds