Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99561 * 2 1 4 4 C 1.52999 * 109.46773 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47358 * 304.99891 * 4 3 2 6 6 C 1.53009 * 109.47228 * 65.00207 * 4 3 2 7 7 C 1.50704 * 109.47193 * 185.00300 * 4 3 2 8 8 O 1.21284 * 119.99355 * 336.48579 * 7 4 3 9 9 N 1.34768 * 120.00135 * 156.48427 * 7 4 3 10 10 C 1.47160 * 120.99611 * 4.29143 * 9 7 4 11 11 C 1.52878 * 108.62856 * 230.52567 * 10 9 7 12 12 O 1.42976 * 109.30097 * 307.92416 * 11 10 9 13 13 C 1.42900 * 114.16418 * 62.36357 * 12 11 10 14 14 C 1.52961 * 109.56133 * 57.37318 * 13 12 11 15 15 C 1.53011 * 109.45259 * 180.24082 * 14 13 12 16 16 C 1.52992 * 109.46463 * 300.05294 * 15 14 13 17 17 N 1.46499 * 109.46833 * 180.02562 * 16 15 14 18 18 C 1.36936 * 120.00482 * 84.96276 * 17 16 15 19 19 H 1.08000 * 119.99629 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00296 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99838 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00128 * 179.97438 * 20 18 17 23 23 H 1.48512 * 109.46700 * 90.00464 * 22 20 18 24 24 H 1.48493 * 109.47558 * 210.00294 * 22 20 18 25 25 H 1.48498 * 109.47348 * 330.00903 * 22 20 18 26 26 C 1.53000 * 109.50564 * 59.99246 * 16 15 14 27 27 C 1.52951 * 109.59566 * 177.59947 * 13 12 11 28 28 C 1.47160 * 120.99140 * 184.57304 * 9 7 4 29 29 H 1.08997 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47383 * 299.99963 * 1 2 3 31 31 H 1.09000 * 109.47042 * 59.99710 * 1 2 3 32 32 H 1.08994 * 109.47181 * 300.00142 * 3 2 1 33 33 H 1.08998 * 109.46644 * 60.00770 * 3 2 1 34 34 H 1.09000 * 109.46637 * 60.55358 * 6 4 3 35 35 H 1.08993 * 109.46686 * 180.55092 * 6 4 3 36 36 H 1.08993 * 109.47135 * 300.55152 * 6 4 3 37 37 H 1.09001 * 109.67163 * 350.31264 * 10 9 7 38 38 H 1.08999 * 109.67760 * 110.85017 * 10 9 7 39 39 H 1.08995 * 109.58101 * 187.90907 * 11 10 9 40 40 H 1.09001 * 109.36692 * 67.80702 * 11 10 9 41 41 H 1.09007 * 109.47563 * 300.23164 * 14 13 12 42 42 H 1.08996 * 109.47708 * 60.24438 * 14 13 12 43 43 H 1.09003 * 109.47360 * 180.02562 * 15 14 13 44 44 H 1.09002 * 109.47407 * 60.05026 * 15 14 13 45 45 H 1.09007 * 109.46335 * 299.98280 * 16 15 14 46 46 H 0.97002 * 119.99941 * 264.96656 * 17 16 15 47 47 H 0.96999 * 119.99513 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.47505 * 180.02562 * 26 16 15 49 49 H 1.09003 * 109.47197 * 60.00709 * 26 16 15 50 50 H 1.08998 * 109.47278 * 299.77599 * 27 13 12 51 51 H 1.08996 * 109.47004 * 59.78387 * 27 13 12 52 52 H 1.09003 * 109.68503 * 249.19612 * 28 9 7 53 53 H 1.09003 * 109.68764 * 9.76235 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8508 0.5687 0.8427 6 6 3.9963 0.5366 -1.3065 7 6 4.1479 2.5562 0.1246 8 8 3.5173 3.5348 -0.2155 9 7 5.3961 2.6950 0.6132 10 6 6.2155 1.5184 0.9447 11 6 6.7660 1.6898 2.3606 12 8 7.4097 2.9621 2.4666 13 6 6.5392 4.0769 2.2625 14 6 5.3854 4.0159 3.2649 15 6 4.4518 5.2072 3.0403 16 6 5.2309 6.5094 3.2358 17 7 4.3369 7.6501 3.0213 18 6 3.5597 8.1136 4.0490 19 1 3.6060 7.6385 5.0178 20 6 2.7131 9.1947 3.8460 21 7 2.6570 9.7740 2.6654 22 14 1.6523 9.8265 5.2477 23 1 2.3961 10.8683 6.0006 24 1 0.4024 10.4105 4.6983 25 1 1.3152 8.7033 6.1586 26 6 6.3848 6.5698 2.2329 27 6 7.3184 5.3785 2.4575 28 6 5.9783 4.0279 0.8371 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6885 1.8465 -0.8899 33 1 1.6886 1.8463 0.8901 34 1 3.6895 1.1578 -2.1479 35 1 5.0820 0.4416 -1.3018 36 1 3.5455 -0.4513 -1.4008 37 1 5.6019 0.6188 0.8970 38 1 7.0427 1.4369 0.2396 39 1 7.4859 0.8989 2.5708 40 1 5.9456 1.6361 3.0763 41 1 4.8307 3.0881 3.1246 42 1 5.7829 4.0519 4.2791 43 1 3.6297 5.1644 3.7547 44 1 4.0537 5.1708 2.0262 45 1 5.6287 6.5458 4.2500 46 1 4.2956 8.0770 2.1513 47 1 2.0652 10.5293 2.5234 48 1 6.9397 7.4975 2.3730 49 1 5.9871 6.5336 1.2187 50 1 7.7168 5.4151 3.4714 51 1 8.1400 5.4208 1.7425 52 1 6.7808 4.2032 0.1206 53 1 5.2075 4.7897 0.7196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105462262.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = -115.260229 kcal Electronic energy + Delta-G solvation = -32305.816313 eV Core-core repulsion = 28177.855996 eV Total energy + Delta-G solvation = -4127.960317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10736 -39.37323 -37.90864 -37.05762 -34.95085 -33.98779 -33.60648 -31.38067 -30.51160 -29.65618 -27.84394 -27.52107 -26.38594 -25.83056 -23.91049 -23.35075 -22.72718 -21.95615 -20.43022 -19.35114 -18.36759 -17.86405 -17.02045 -16.86236 -16.39685 -16.16604 -15.98160 -15.55120 -15.13158 -14.95437 -14.86492 -14.56374 -14.19255 -13.89397 -13.73666 -13.61773 -13.37801 -13.25132 -12.79588 -12.70017 -12.57656 -12.40684 -12.00102 -11.94981 -11.79321 -11.70872 -11.54843 -11.49243 -11.13302 -11.09482 -11.00249 -10.80877 -10.72577 -10.58522 -10.32627 -10.07509 -9.92855 -9.86514 -9.68098 -9.60033 -9.44705 -8.83322 -8.59109 -6.90387 -5.71589 -3.00065 2.47413 2.65876 3.45950 3.50815 3.52721 3.53816 3.60660 4.26810 4.53719 4.54329 4.62549 4.65467 4.72663 4.82103 4.90326 4.95824 4.98477 5.06634 5.12401 5.14556 5.33734 5.37691 5.41122 5.42439 5.44549 5.50235 5.53120 5.53638 5.56617 5.63389 5.70966 5.73878 5.77565 5.81254 5.89512 5.94778 6.01247 6.23614 6.26662 6.30223 6.36118 6.50643 6.59039 6.72871 6.86674 6.99015 7.16329 7.18039 7.21157 7.74177 8.04309 8.47026 9.57956 10.16588 10.51225 11.51136 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009795 B = 0.003580 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.862471 B = 7820.287789 C = 9813.624818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.078 3.922 4 C -0.108 4.108 5 H 0.100 0.900 6 C -0.138 4.138 7 C 0.522 3.478 8 O -0.525 6.525 9 N -0.610 5.610 10 C 0.069 3.931 11 C 0.043 3.957 12 O -0.372 6.372 13 C 0.110 3.890 14 C -0.135 4.135 15 C -0.136 4.136 16 C 0.179 3.821 17 N -0.724 5.724 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.125 4.125 27 C -0.095 4.095 28 C 0.087 3.913 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.072 0.928 49 H 0.062 0.938 50 H 0.074 0.926 51 H 0.067 0.933 52 H 0.071 0.929 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.886 -23.380 -5.946 25.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C 0.001 3.999 4 C -0.129 4.129 5 H 0.118 0.882 6 C -0.196 4.196 7 C 0.309 3.691 8 O -0.400 6.400 9 N -0.345 5.345 10 C -0.054 4.054 11 C -0.034 4.034 12 O -0.290 6.290 13 C 0.070 3.930 14 C -0.173 4.173 15 C -0.176 4.176 16 C 0.069 3.931 17 N -0.364 5.364 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.209 1.209 26 C -0.164 4.164 27 C -0.133 4.133 28 C -0.035 4.035 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.091 0.909 49 H 0.081 0.919 50 H 0.093 0.907 51 H 0.086 0.914 52 H 0.089 0.911 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.737 -22.920 -5.942 24.617 hybrid contribution -1.138 0.538 0.471 1.343 sum 5.600 -22.382 -5.472 23.712 Atomic orbital electron populations 1.22737 0.80572 1.02624 1.00428 1.87768 1.20019 1.27829 1.95598 1.22254 0.91301 0.84332 1.02038 1.21186 0.95424 0.94667 1.01668 0.88230 1.21709 1.01187 1.01585 0.95079 1.20363 0.80879 0.90848 0.76965 1.90777 1.60795 1.40496 1.47964 1.48052 1.14510 1.07344 1.64552 1.22449 0.95933 0.88975 0.98058 1.22868 0.98555 0.86995 0.95029 1.87978 1.35774 1.13203 1.92094 1.21872 0.90567 0.87133 0.93427 1.22059 0.96657 0.99652 0.98946 1.22325 0.98345 0.94686 1.02267 1.20210 0.89223 0.87373 0.96322 1.42415 1.47544 1.33734 1.12720 1.19227 1.15820 1.10201 0.91559 0.91299 1.24727 1.00516 0.98949 0.96764 1.69667 1.41921 1.25179 1.21296 0.86224 0.80016 0.78698 0.81467 1.21767 1.21827 1.20855 1.21867 0.97049 0.96866 1.00584 1.21400 0.97767 0.91247 1.02933 1.22518 0.99737 0.84926 0.96346 0.89588 0.93835 0.93897 0.91841 0.92517 0.91933 0.92151 0.90527 0.88724 0.90419 0.87867 0.92201 0.92724 0.91427 0.91931 0.91838 0.93556 0.78269 0.93572 0.90928 0.91892 0.90743 0.91401 0.91114 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.19 10.23 -35.23 -0.36 -4.55 16 3 C 0.08 0.89 4.74 37.16 0.18 1.07 16 4 C -0.11 -1.12 2.11 -91.77 -0.19 -1.31 16 5 H 0.10 0.87 6.51 -51.93 -0.34 0.53 16 6 C -0.14 -1.17 8.91 37.16 0.33 -0.83 16 7 C 0.52 7.07 6.83 -10.99 -0.08 7.00 16 8 O -0.53 -9.43 15.67 5.55 0.09 -9.34 16 9 N -0.61 -7.35 2.54 -172.54 -0.44 -7.79 16 10 C 0.07 0.58 5.92 -3.74 -0.02 0.56 16 11 C 0.04 0.39 6.58 37.10 0.24 0.63 16 12 O -0.37 -4.55 10.23 -35.23 -0.36 -4.91 16 13 C 0.11 1.47 0.86 -90.53 -0.08 1.39 16 14 C -0.13 -2.00 4.35 -26.75 -0.12 -2.11 16 15 C -0.14 -2.53 5.23 -26.73 -0.14 -2.67 16 16 C 0.18 3.58 2.77 -67.93 -0.19 3.39 16 17 N -0.72 -18.45 5.12 -53.43 -0.27 -18.73 16 18 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 22 Si 0.90 22.79 29.55 -169.99 -5.02 17.77 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 26 C -0.13 -2.06 5.12 -26.73 -0.14 -2.20 16 27 C -0.09 -1.29 5.11 -26.75 -0.14 -1.43 16 28 C 0.09 1.19 4.53 -3.55 -0.02 1.18 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.78 8.04 -51.93 -0.42 0.36 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.42 7.31 -51.93 -0.38 0.04 16 36 H 0.08 0.59 7.81 -51.93 -0.41 0.19 16 37 H 0.09 0.59 5.25 -51.93 -0.27 0.32 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.56 6.26 -51.93 -0.32 0.24 16 41 H 0.05 0.78 6.11 -51.93 -0.32 0.46 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.06 1.29 6.26 -51.93 -0.32 0.97 16 45 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 46 H 0.38 10.46 7.80 -40.82 -0.32 10.14 16 47 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.06 1.05 6.61 -51.93 -0.34 0.71 16 50 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 52 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 53 H 0.11 1.92 3.85 -51.93 -0.20 1.72 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -33.55 399.06 -8.22 -41.77 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -9.10 Total: 9.04 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 0.52 Total: -1.28 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.01 Total: -54.50 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.63 Total: -18.81 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.55 -8.22 -41.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105462262.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.493 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds