Wall clock time and date at job start Sat Apr 11 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99561 * 2 1 4 4 C 1.52999 * 109.46773 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47358 * 304.99891 * 4 3 2 6 6 C 1.53009 * 109.47228 * 65.00207 * 4 3 2 7 7 C 1.50704 * 109.47193 * 185.00300 * 4 3 2 8 8 O 1.21284 * 119.99355 * 336.48579 * 7 4 3 9 9 N 1.34768 * 120.00135 * 156.48427 * 7 4 3 10 10 C 1.47160 * 120.99611 * 4.29143 * 9 7 4 11 11 C 1.52878 * 108.62856 * 230.52567 * 10 9 7 12 12 O 1.42976 * 109.30097 * 307.92416 * 11 10 9 13 13 C 1.42900 * 114.16418 * 62.36357 * 12 11 10 14 14 C 1.52961 * 109.56133 * 57.37318 * 13 12 11 15 15 C 1.53011 * 109.45259 * 180.24082 * 14 13 12 16 16 C 1.52992 * 109.46463 * 300.05294 * 15 14 13 17 17 N 1.46499 * 109.46833 * 180.02562 * 16 15 14 18 18 C 1.36936 * 120.00482 * 84.96276 * 17 16 15 19 19 H 1.08000 * 119.99629 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00296 * 179.97438 * 18 17 16 21 21 N 1.31624 * 119.99838 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00128 * 179.97438 * 20 18 17 23 23 H 1.48512 * 109.46700 * 90.00464 * 22 20 18 24 24 H 1.48493 * 109.47558 * 210.00294 * 22 20 18 25 25 H 1.48498 * 109.47348 * 330.00903 * 22 20 18 26 26 C 1.53000 * 109.50564 * 59.99246 * 16 15 14 27 27 C 1.52951 * 109.59566 * 177.59947 * 13 12 11 28 28 C 1.47160 * 120.99140 * 184.57304 * 9 7 4 29 29 H 1.08997 * 109.47004 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47383 * 299.99963 * 1 2 3 31 31 H 1.09000 * 109.47042 * 59.99710 * 1 2 3 32 32 H 1.08994 * 109.47181 * 300.00142 * 3 2 1 33 33 H 1.08998 * 109.46644 * 60.00770 * 3 2 1 34 34 H 1.09000 * 109.46637 * 60.55358 * 6 4 3 35 35 H 1.08993 * 109.46686 * 180.55092 * 6 4 3 36 36 H 1.08993 * 109.47135 * 300.55152 * 6 4 3 37 37 H 1.09001 * 109.67163 * 350.31264 * 10 9 7 38 38 H 1.08999 * 109.67760 * 110.85017 * 10 9 7 39 39 H 1.08995 * 109.58101 * 187.90907 * 11 10 9 40 40 H 1.09001 * 109.36692 * 67.80702 * 11 10 9 41 41 H 1.09007 * 109.47563 * 300.23164 * 14 13 12 42 42 H 1.08996 * 109.47708 * 60.24438 * 14 13 12 43 43 H 1.09003 * 109.47360 * 180.02562 * 15 14 13 44 44 H 1.09002 * 109.47407 * 60.05026 * 15 14 13 45 45 H 1.09007 * 109.46335 * 299.98280 * 16 15 14 46 46 H 0.97002 * 119.99941 * 264.96656 * 17 16 15 47 47 H 0.96999 * 119.99513 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.47505 * 180.02562 * 26 16 15 49 49 H 1.09003 * 109.47197 * 60.00709 * 26 16 15 50 50 H 1.08998 * 109.47278 * 299.77599 * 27 13 12 51 51 H 1.08996 * 109.47004 * 59.78387 * 27 13 12 52 52 H 1.09003 * 109.68503 * 249.19612 * 28 9 7 53 53 H 1.09003 * 109.68764 * 9.76235 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8508 0.5687 0.8427 6 6 3.9963 0.5366 -1.3065 7 6 4.1479 2.5562 0.1246 8 8 3.5173 3.5348 -0.2155 9 7 5.3961 2.6950 0.6132 10 6 6.2155 1.5184 0.9447 11 6 6.7660 1.6898 2.3606 12 8 7.4097 2.9621 2.4666 13 6 6.5392 4.0769 2.2625 14 6 5.3854 4.0159 3.2649 15 6 4.4518 5.2072 3.0403 16 6 5.2309 6.5094 3.2358 17 7 4.3369 7.6501 3.0213 18 6 3.5597 8.1136 4.0490 19 1 3.6060 7.6385 5.0178 20 6 2.7131 9.1947 3.8460 21 7 2.6570 9.7740 2.6654 22 14 1.6523 9.8265 5.2477 23 1 2.3961 10.8683 6.0006 24 1 0.4024 10.4105 4.6983 25 1 1.3152 8.7033 6.1586 26 6 6.3848 6.5698 2.2329 27 6 7.3184 5.3785 2.4575 28 6 5.9783 4.0279 0.8371 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6885 1.8465 -0.8899 33 1 1.6886 1.8463 0.8901 34 1 3.6895 1.1578 -2.1479 35 1 5.0820 0.4416 -1.3018 36 1 3.5455 -0.4513 -1.4008 37 1 5.6019 0.6188 0.8970 38 1 7.0427 1.4369 0.2396 39 1 7.4859 0.8989 2.5708 40 1 5.9456 1.6361 3.0763 41 1 4.8307 3.0881 3.1246 42 1 5.7829 4.0519 4.2791 43 1 3.6297 5.1644 3.7547 44 1 4.0537 5.1708 2.0262 45 1 5.6287 6.5458 4.2500 46 1 4.2956 8.0770 2.1513 47 1 2.0652 10.5293 2.5234 48 1 6.9397 7.4975 2.3730 49 1 5.9871 6.5336 1.2187 50 1 7.7168 5.4151 3.4714 51 1 8.1400 5.4208 1.7425 52 1 6.7808 4.2032 0.1206 53 1 5.2075 4.7897 0.7196 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105462262.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:14 Heat of formation + Delta-G solvation = -138.556728 kcal Electronic energy + Delta-G solvation = -32306.826525 eV Core-core repulsion = 28177.855996 eV Total energy + Delta-G solvation = -4128.970529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.14588 -40.45595 -38.80354 -38.35806 -36.02738 -35.57378 -34.62325 -33.09174 -31.87361 -30.93876 -28.99316 -28.41222 -27.57852 -26.65000 -25.51825 -24.62826 -23.79346 -23.18255 -21.87431 -20.42600 -19.55294 -19.00734 -18.78128 -17.91029 -17.33245 -17.08871 -16.97663 -16.74618 -16.45675 -15.99840 -15.91021 -15.71825 -15.40923 -15.25317 -15.21323 -14.75452 -14.70308 -14.23298 -14.09586 -13.86917 -13.49677 -13.32222 -13.28806 -13.16983 -13.08719 -12.96617 -12.75446 -12.50980 -12.47461 -12.34129 -12.26042 -12.13515 -12.07935 -11.98665 -11.90789 -11.59624 -11.44210 -11.29440 -10.93473 -10.78080 -10.70466 -10.67790 -9.57567 -9.02053 -7.95305 -5.23975 1.43629 1.45533 1.46003 1.54085 1.72525 2.53376 2.65404 2.75573 3.36784 3.39106 3.56788 3.66589 3.73398 3.78732 3.88139 3.92684 3.99559 4.09750 4.17152 4.22355 4.27118 4.34798 4.42392 4.43013 4.44095 4.50546 4.51139 4.56139 4.57754 4.63012 4.69547 4.76274 4.80433 4.83521 4.84370 4.91773 4.92793 4.97556 5.03160 5.08016 5.18405 5.23322 5.24028 5.32166 5.45477 5.51212 5.59780 6.04824 6.20629 6.26648 6.27151 7.03397 7.32050 8.09040 8.32007 9.28468 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009795 B = 0.003580 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.862471 B = 7820.287789 C = 9813.624818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.395 6.395 3 C 0.080 3.920 4 C -0.100 4.100 5 H 0.125 0.875 6 C -0.132 4.132 7 C 0.516 3.484 8 O -0.582 6.582 9 N -0.608 5.608 10 C 0.065 3.935 11 C 0.035 3.965 12 O -0.374 6.374 13 C 0.121 3.879 14 C -0.124 4.124 15 C -0.121 4.121 16 C 0.174 3.826 17 N -0.738 5.738 18 C -0.238 4.238 19 H 0.074 0.926 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.972 3.028 23 H -0.284 1.284 24 H -0.297 1.297 25 H -0.271 1.271 26 C -0.115 4.115 27 C -0.088 4.088 28 C 0.087 3.913 29 H 0.110 0.890 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.040 0.960 45 H 0.044 0.956 46 H 0.370 0.630 47 H 0.250 0.750 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.082 0.918 51 H 0.091 0.909 52 H 0.082 0.918 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.779 -26.646 -5.141 28.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C 0.003 3.997 4 C -0.121 4.121 5 H 0.143 0.857 6 C -0.189 4.189 7 C 0.305 3.695 8 O -0.462 6.462 9 N -0.341 5.341 10 C -0.057 4.057 11 C -0.041 4.041 12 O -0.293 6.293 13 C 0.081 3.919 14 C -0.163 4.163 15 C -0.162 4.162 16 C 0.066 3.934 17 N -0.377 5.377 18 C -0.370 4.370 19 H 0.092 0.908 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.800 3.200 23 H -0.211 1.211 24 H -0.223 1.223 25 H -0.196 1.196 26 C -0.153 4.153 27 C -0.127 4.127 28 C -0.036 4.036 29 H 0.128 0.872 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.140 0.860 38 H 0.115 0.885 39 H 0.158 0.842 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.202 0.798 47 H 0.059 0.941 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.109 0.891 52 H 0.100 0.900 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.687 -26.268 -5.100 28.133 hybrid contribution -1.712 1.447 0.214 2.252 sum 6.975 -24.821 -4.886 26.241 Atomic orbital electron populations 1.22947 0.79446 1.04227 1.00485 1.87748 1.21280 1.26887 1.95548 1.22129 0.92543 0.84618 1.00402 1.21186 0.94169 0.92950 1.03791 0.85745 1.21698 1.02600 1.01454 0.93145 1.20993 0.81008 0.91452 0.76054 1.90757 1.62319 1.42535 1.50559 1.48168 1.14399 1.07930 1.63566 1.22785 0.96422 0.88227 0.98215 1.23204 0.99509 0.86268 0.95154 1.87973 1.35450 1.13821 1.92069 1.21579 0.89938 0.88003 0.92353 1.21948 0.96534 0.97813 0.99968 1.22049 0.98159 0.95993 0.99981 1.20454 0.89636 0.86068 0.97265 1.42650 1.48274 1.35223 1.11577 1.19609 1.15468 1.09734 0.92211 0.90844 1.25559 1.02406 0.99724 0.99248 1.69835 1.43075 1.25839 1.23419 0.85166 0.77889 0.78268 0.78627 1.21078 1.22329 1.19585 1.21714 0.96146 0.98564 0.98922 1.21329 0.97416 0.89817 1.04093 1.22359 0.98907 0.85295 0.97055 0.87190 0.94035 0.93679 0.93419 0.94451 0.93489 0.89991 0.89287 0.85985 0.88481 0.84221 0.92583 0.91879 0.90683 0.94688 0.94112 0.93789 0.79821 0.94117 0.91204 0.92674 0.89965 0.89088 0.89963 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -7.99 10.23 -148.98 -1.52 -9.51 16 3 C 0.08 1.87 4.74 71.98 0.34 2.21 16 4 C -0.10 -1.92 2.11 -11.54 -0.02 -1.94 16 5 H 0.12 1.76 6.51 -2.39 -0.02 1.74 16 6 C -0.13 -1.92 8.91 71.99 0.64 -1.27 16 7 C 0.52 13.90 6.83 87.66 0.60 14.50 16 8 O -0.58 -22.16 15.67 -3.04 -0.05 -22.21 16 9 N -0.61 -13.69 2.54 -818.19 -2.08 -15.77 16 10 C 0.06 0.83 5.92 86.21 0.51 1.34 16 11 C 0.04 0.48 6.58 71.94 0.47 0.96 16 12 O -0.37 -7.77 10.23 -148.98 -1.52 -9.30 16 13 C 0.12 3.04 0.86 -10.74 -0.01 3.03 16 14 C -0.12 -3.58 4.35 30.59 0.13 -3.45 16 15 C -0.12 -4.71 5.23 30.60 0.16 -4.55 16 16 C 0.17 7.16 2.77 44.99 0.12 7.28 16 17 N -0.74 -39.25 5.12 -322.95 -1.65 -40.90 16 18 C -0.24 -13.80 9.93 84.03 0.83 -12.97 16 19 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 21 N -0.97 -61.90 13.06 21.65 0.28 -61.62 16 22 Si 0.97 47.81 29.55 68.60 2.03 49.84 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 25 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 26 C -0.12 -3.83 5.12 30.60 0.16 -3.68 16 27 C -0.09 -2.24 5.11 30.58 0.16 -2.09 16 28 C 0.09 2.33 4.53 86.34 0.39 2.72 16 29 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.05 1.24 8.04 -2.39 -0.02 1.22 16 33 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.84 7.31 -2.39 -0.02 0.82 16 36 H 0.09 1.11 7.81 -2.39 -0.02 1.10 16 37 H 0.12 0.91 5.25 -2.39 -0.01 0.89 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.84 6.26 -2.39 -0.01 0.82 16 41 H 0.06 1.72 6.11 -2.38 -0.01 1.70 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.04 1.77 6.26 -2.39 -0.01 1.76 16 45 H 0.04 1.83 8.08 -2.38 -0.02 1.81 16 46 H 0.37 21.32 7.80 -92.71 -0.72 20.60 16 47 H 0.25 15.45 8.31 -92.71 -0.77 14.67 16 48 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.05 1.92 6.61 -2.39 -0.02 1.91 16 50 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 51 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 52 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 53 H 0.08 2.74 3.85 -2.39 -0.01 2.74 16 Total: -1.00 -76.78 399.06 1.86 -74.92 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: 0.18 Total: 34.98 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 6.20 Total: -0.42 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -3.45 Total: -118.29 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -3.10 Total: -41.02 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -76.78 1.86 -74.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105462262.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.641 kcal (2) G-P(sol) polarization free energy of solvation -76.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds