Wall clock time and date at job start Sat Apr 11 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00104 * 2 1 4 4 C 1.53008 * 109.46752 * 60.00178 * 3 2 1 5 5 C 1.52996 * 109.47187 * 300.00363 * 3 2 1 6 6 C 1.52996 * 109.47033 * 180.02562 * 3 2 1 7 7 C 1.52999 * 109.47188 * 65.00388 * 6 3 2 8 8 H 1.08993 * 109.47075 * 54.99900 * 7 6 3 9 9 C 1.53002 * 109.47092 * 175.00092 * 7 6 3 10 10 N 1.46501 * 109.46958 * 294.99623 * 7 6 3 11 11 C 1.34777 * 119.99564 * 154.99896 * 10 7 6 12 12 O 1.21347 * 120.00220 * 0.02562 * 11 10 7 13 13 C 1.49457 * 119.99505 * 180.02562 * 11 10 7 14 14 O 1.21341 * 119.99936 * 353.23988 * 13 11 10 15 15 N 1.34782 * 119.99484 * 173.23616 * 13 11 10 16 16 C 1.46923 * 120.62684 * 171.44241 * 15 13 11 17 17 C 1.53197 * 108.89116 * 126.46037 * 16 15 13 18 18 C 1.53040 * 109.31091 * 54.56637 * 17 16 15 19 19 C 1.50699 * 109.45967 * 178.62615 * 18 17 16 20 20 H 1.07992 * 120.00111 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99851 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99648 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99938 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46878 * 60.00111 * 23 21 19 25 25 H 1.48497 * 109.46980 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47244 * 300.00263 * 23 21 19 27 27 C 1.53045 * 109.53845 * 298.63723 * 18 17 16 28 28 C 1.46960 * 120.65505 * 351.26403 * 15 13 11 29 29 H 1.08997 * 109.47390 * 299.99915 * 1 2 3 30 30 H 1.09007 * 109.47040 * 59.99641 * 1 2 3 31 31 H 1.08992 * 109.47234 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46845 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.46897 * 299.99773 * 4 3 2 34 34 H 1.08999 * 109.47165 * 59.99631 * 4 3 2 35 35 H 1.09000 * 109.47176 * 299.99728 * 5 3 2 36 36 H 1.08998 * 109.47534 * 60.00024 * 5 3 2 37 37 H 1.09005 * 109.47279 * 179.97438 * 5 3 2 38 38 H 1.09001 * 109.47279 * 305.00332 * 6 3 2 39 39 H 1.09007 * 109.46960 * 185.00370 * 6 3 2 40 40 H 1.09000 * 109.47000 * 59.99822 * 9 7 6 41 41 H 1.08994 * 109.46784 * 179.97438 * 9 7 6 42 42 H 1.09009 * 109.46842 * 299.99721 * 9 7 6 43 43 H 0.97003 * 119.99949 * 335.00369 * 10 7 6 44 44 H 1.09007 * 109.59032 * 6.60837 * 16 15 13 45 45 H 1.08996 * 109.59077 * 246.31988 * 16 15 13 46 46 H 1.08998 * 109.49713 * 174.51284 * 17 16 15 47 47 H 1.08994 * 109.49757 * 294.58305 * 17 16 15 48 48 H 1.09008 * 109.46079 * 58.65092 * 18 17 16 49 49 H 0.97005 * 119.99611 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.49836 * 181.31973 * 27 18 17 51 51 H 1.09010 * 109.49037 * 301.41123 * 27 18 17 52 52 H 1.08992 * 109.46848 * 113.75398 * 28 15 13 53 53 H 1.09003 * 109.71205 * 353.46093 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5588 2.0647 1.2494 5 6 1.5588 2.0647 -1.2492 6 6 3.5355 1.1846 -0.0006 7 6 3.9952 0.5369 -1.3083 8 1 3.6039 1.1049 -2.1523 9 6 5.5242 0.5293 -1.3637 10 7 3.4974 -0.8394 -1.3730 11 6 3.3223 -1.4372 -2.5682 12 8 3.5774 -0.8355 -3.5907 13 6 2.8139 -2.8410 -2.6341 14 8 2.6754 -3.4846 -1.6148 15 7 2.5093 -3.3921 -3.8259 16 6 2.1887 -4.8222 -3.9292 17 6 0.8386 -4.9780 -4.6361 18 6 0.8829 -4.2453 -5.9790 19 6 -0.4323 -4.4248 -6.6925 20 1 -1.2208 -5.0029 -6.2340 21 6 -0.6292 -3.8499 -7.9302 22 7 0.3309 -3.1454 -8.4882 23 14 -2.2592 -4.0729 -8.8149 24 1 -3.3549 -3.5153 -7.9819 25 1 -2.2169 -3.3609 -10.1174 26 1 -2.5019 -5.5191 -9.0484 27 6 1.1342 -2.7546 -5.7407 28 6 2.4876 -2.5736 -5.0462 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 2.0018 3.0606 1.2491 33 1 0.4722 2.1507 1.2493 34 1 1.8804 1.5237 2.1393 35 1 1.8804 1.5239 -2.1392 36 1 0.4722 2.1509 -1.2492 37 1 2.0018 3.0607 -1.2489 38 1 3.8515 0.5681 0.8409 39 1 3.9786 2.1765 0.0890 40 1 5.9155 -0.0387 -0.5197 41 1 5.8517 0.0675 -2.2951 42 1 5.8946 1.5534 -1.3156 43 1 3.2938 -1.3204 -0.5556 44 1 2.1308 -5.2568 -2.9312 45 1 2.9631 -5.3297 -4.5044 46 1 0.6364 -6.0356 -4.8053 47 1 0.0512 -4.5519 -4.0145 48 1 1.6867 -4.6558 -6.5903 49 1 0.1925 -2.7412 -9.3591 50 1 1.1424 -2.2297 -6.6959 51 1 0.3439 -2.3490 -5.1089 52 1 3.2868 -2.8955 -5.7138 53 1 2.6281 -1.5240 -4.7875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117490997.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:49 Heat of formation + Delta-G solvation = -132.009515 kcal Electronic energy + Delta-G solvation = -32159.687632 eV Core-core repulsion = 28031.001011 eV Total energy + Delta-G solvation = -4128.686621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.97189 -40.49792 -39.52948 -38.53253 -36.99276 -35.33643 -34.06915 -33.01204 -31.81365 -31.71537 -28.55533 -28.39846 -28.33005 -26.87637 -26.18693 -24.25002 -23.86976 -22.20809 -21.52215 -20.82780 -20.38971 -18.70952 -18.34435 -18.01443 -17.30813 -17.16493 -16.76178 -16.54573 -16.49499 -16.18664 -15.83811 -15.28076 -15.22966 -14.77551 -14.67238 -14.60106 -14.46104 -14.33889 -13.95659 -13.89055 -13.46907 -13.36449 -13.31095 -13.17118 -12.90324 -12.81852 -12.79242 -12.75465 -12.52056 -12.45604 -12.29951 -12.23820 -12.15052 -11.94799 -11.66713 -11.50326 -11.27594 -11.02749 -10.99022 -10.46781 -10.45067 -10.23508 -9.90878 -9.65344 -8.07117 -6.21414 0.41811 1.40842 1.42259 1.42892 1.50674 2.19850 2.44023 2.55110 2.89138 3.18979 3.40241 3.60848 3.81356 4.03658 4.11497 4.25029 4.27684 4.28134 4.31897 4.42347 4.42867 4.50070 4.51543 4.55488 4.67991 4.69091 4.71741 4.76987 4.79717 4.88283 4.90937 4.91530 4.94814 4.99481 5.05920 5.14001 5.15260 5.19369 5.27806 5.33704 5.38854 5.40075 5.42872 5.58283 5.62854 5.96293 6.09141 6.13916 6.33445 6.37742 6.39643 6.78691 6.88436 7.05419 7.46193 8.96323 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.003038 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.298235 B = 9214.408914 C = 9789.857216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.102 3.898 4 C -0.171 4.171 5 C -0.183 4.183 6 C -0.107 4.107 7 C 0.133 3.867 8 H 0.082 0.918 9 C -0.160 4.160 10 N -0.662 5.662 11 C 0.510 3.490 12 O -0.536 6.536 13 C 0.499 3.501 14 O -0.551 6.551 15 N -0.573 5.573 16 C 0.112 3.888 17 C -0.112 4.112 18 C 0.045 3.955 19 C -0.536 4.536 20 H 0.051 0.949 21 C 0.015 3.985 22 N -0.913 5.913 23 Si 0.952 3.048 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.272 1.272 27 C -0.111 4.111 28 C 0.085 3.915 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.039 0.961 42 H 0.092 0.908 43 H 0.417 0.583 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.043 0.957 48 H 0.003 0.997 49 H 0.261 0.739 50 H 0.076 0.924 51 H 0.022 0.978 52 H 0.057 0.943 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.459 12.697 20.423 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C 0.063 3.937 4 C -0.229 4.229 5 C -0.240 4.240 6 C -0.144 4.144 7 C 0.030 3.970 8 H 0.100 0.900 9 C -0.218 4.218 10 N -0.314 5.314 11 C 0.291 3.709 12 O -0.416 6.416 13 C 0.282 3.718 14 O -0.430 6.430 15 N -0.305 5.305 16 C -0.010 4.010 17 C -0.150 4.150 18 C 0.026 3.974 19 C -0.574 4.574 20 H 0.069 0.931 21 C -0.184 4.184 22 N -0.553 5.553 23 Si 0.778 3.222 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.197 1.197 27 C -0.150 4.150 28 C -0.036 4.036 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.111 0.889 43 H 0.255 0.745 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.021 0.979 49 H 0.070 0.930 50 H 0.095 0.905 51 H 0.041 0.959 52 H 0.075 0.925 53 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.726 12.734 20.090 25.009 hybrid contribution -1.459 -0.416 -0.842 1.735 sum 6.267 12.318 19.248 23.695 Atomic orbital electron populations 1.22768 0.81313 1.02468 1.00438 1.87934 1.19868 1.28335 1.95088 1.21704 0.93935 0.83160 0.94881 1.22355 1.02020 1.01430 0.97063 1.22512 1.01909 1.01639 0.97927 1.22010 0.92294 1.03725 0.96368 1.21364 0.94829 0.80861 0.99986 0.89998 1.22169 0.93780 1.03926 1.01955 1.45804 1.62791 1.15386 1.07435 1.19954 0.79211 0.86769 0.84960 1.90505 1.51479 1.65844 1.33741 1.20385 0.79404 0.88344 0.83632 1.90667 1.54438 1.64095 1.33827 1.48180 1.64017 1.10681 1.07595 1.21818 0.97535 0.79757 1.01898 1.21839 0.95229 1.00839 0.97077 1.18630 0.95330 0.92007 0.91435 1.21522 1.00506 1.32282 1.03073 0.93120 1.25707 0.99735 0.94911 0.98065 1.69977 1.33782 1.34672 1.16842 0.85709 0.80414 0.78365 0.77728 1.19982 1.20897 1.19681 1.21786 0.93527 1.00189 0.99454 1.22778 0.98043 0.98367 0.84445 0.92115 0.94558 0.90662 0.89679 0.92329 0.91430 0.93686 0.92565 0.89431 0.89283 0.85646 0.91277 0.94198 0.88905 0.74549 0.88961 0.90457 0.90997 0.93826 0.97883 0.92963 0.90525 0.95944 0.92508 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.21 113.37 1.16 1.68 16 2 O -0.39 -8.32 8.14 -148.98 -1.21 -9.53 16 3 C 0.10 1.55 0.82 -10.79 -0.01 1.54 16 4 C -0.17 -1.84 8.25 71.98 0.59 -1.24 16 5 C -0.18 -3.08 7.77 71.98 0.56 -2.52 16 6 C -0.11 -1.28 4.15 30.59 0.13 -1.15 16 7 C 0.13 2.44 2.25 44.99 0.10 2.54 16 8 H 0.08 1.80 5.49 -2.39 -0.01 1.79 16 9 C -0.16 -2.52 9.48 71.98 0.68 -1.83 16 10 N -0.66 -16.37 3.86 -443.86 -1.71 -18.08 16 11 C 0.51 16.61 7.71 87.27 0.67 17.28 16 12 O -0.54 -19.37 12.85 -3.24 -0.04 -19.41 16 13 C 0.50 18.36 7.73 87.27 0.67 19.04 16 14 O -0.55 -21.03 15.93 -3.22 -0.05 -21.08 16 15 N -0.57 -22.34 2.98 -820.39 -2.44 -24.79 16 16 C 0.11 4.16 6.44 86.36 0.56 4.71 16 17 C -0.11 -4.73 5.30 30.67 0.16 -4.57 16 18 C 0.04 2.25 2.06 -11.51 -0.02 2.23 16 19 C -0.54 -29.78 8.56 25.60 0.22 -29.56 16 20 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 21 C 0.01 0.82 5.30 84.66 0.45 1.26 16 22 N -0.91 -52.65 11.30 21.45 0.24 -52.41 16 23 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 C -0.11 -5.44 5.15 30.67 0.16 -5.28 16 28 C 0.08 3.56 5.97 86.36 0.52 4.08 16 29 H 0.06 0.93 6.42 -2.39 -0.02 0.91 16 30 H 0.04 0.75 6.42 -2.38 -0.02 0.74 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.06 0.67 6.54 -2.38 -0.02 0.65 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.04 1.01 6.23 -2.39 -0.01 1.00 16 36 H 0.06 0.98 6.54 -2.39 -0.02 0.96 16 37 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 41 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.42 10.09 7.19 -92.71 -0.67 9.42 16 44 H 0.09 3.23 7.01 -2.38 -0.02 3.22 16 45 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 47 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 49 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 50 H 0.08 4.20 6.03 -2.39 -0.01 4.19 16 51 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 52 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 53 H 0.13 5.29 4.34 -46.00 -0.20 5.09 16 Total: -1.00 -66.22 403.47 3.45 -62.77 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.05 Total: 28.41 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 6.60 Total: 8.21 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -3.92 Total: -95.28 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -1.31 Total: -50.02 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.22 3.45 -62.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117490997.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.238 kcal (2) G-P(sol) polarization free energy of solvation -66.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds