Wall clock time and date at job start Sat Apr 11 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 C 1.53002 * 109.46745 * 120.00105 * 2 1 3 5 5 C 1.52998 * 109.46589 * 175.00212 * 4 2 1 6 6 C 1.53003 * 109.46900 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47229 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46902 * 55.00322 * 7 6 5 9 9 C 1.53002 * 109.47071 * 175.00295 * 7 6 5 10 10 N 1.46495 * 109.46973 * 295.00182 * 7 6 5 11 11 C 1.34778 * 120.00325 * 155.00424 * 10 7 6 12 12 O 1.21351 * 119.99442 * 359.97438 * 11 10 7 13 13 C 1.49443 * 120.00326 * 179.97438 * 11 10 7 14 14 O 1.21351 * 120.00229 * 359.97438 * 13 11 10 15 15 N 1.34780 * 119.99740 * 179.97438 * 13 11 10 16 16 C 1.47420 * 125.65180 * 0.04080 * 15 13 11 17 17 C 1.54907 * 104.83524 * 204.09058 * 16 15 13 18 18 C 1.55155 * 101.58383 * 322.99460 * 17 16 15 19 19 O 1.42906 * 110.71811 * 277.13691 * 18 17 16 20 20 C 1.50694 * 110.72532 * 153.86250 * 18 17 16 21 21 H 1.08003 * 119.99767 * 5.02378 * 20 18 17 22 22 C 1.37877 * 120.00240 * 185.02148 * 20 18 17 23 23 N 1.31510 * 120.00098 * 0.02562 * 22 20 18 24 24 Si 1.86808 * 119.99853 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47096 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46768 * 120.00186 * 24 22 20 27 27 H 1.48497 * 109.46703 * 240.00152 * 24 22 20 28 28 C 1.47026 * 125.64391 * 180.02562 * 15 13 11 29 29 H 1.09003 * 109.47483 * 300.00422 * 1 2 3 30 30 H 1.09001 * 109.46907 * 60.00145 * 1 2 3 31 31 H 1.09003 * 109.47642 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47229 * 240.00116 * 2 1 3 33 33 H 1.08994 * 109.47487 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47371 * 300.00193 * 3 2 1 35 35 H 1.09004 * 109.47001 * 59.99923 * 3 2 1 36 36 H 1.08991 * 109.47229 * 55.00104 * 4 2 1 37 37 H 1.08998 * 109.47016 * 294.99623 * 4 2 1 38 38 H 1.08999 * 109.47717 * 60.00052 * 5 4 2 39 39 H 1.08998 * 109.47421 * 299.99711 * 5 4 2 40 40 H 1.09004 * 109.47166 * 59.99772 * 6 5 4 41 41 H 1.08998 * 109.47027 * 300.00172 * 6 5 4 42 42 H 1.09008 * 109.46988 * 299.99558 * 9 7 6 43 43 H 1.08998 * 109.47458 * 59.99745 * 9 7 6 44 44 H 1.09004 * 109.47010 * 180.02562 * 9 7 6 45 45 H 0.96998 * 120.00031 * 334.99450 * 10 7 6 46 46 H 1.08997 * 110.36858 * 322.93289 * 16 15 13 47 47 H 1.08997 * 110.36396 * 85.14276 * 16 15 13 48 48 H 1.09001 * 111.00336 * 81.06484 * 17 16 15 49 49 H 1.09000 * 111.00618 * 204.91301 * 17 16 15 50 50 H 0.96696 * 113.99731 * 174.96995 * 19 18 17 51 51 H 0.96996 * 120.00114 * 179.97438 * 23 22 20 52 52 H 1.08998 * 109.88351 * 298.39161 * 28 15 13 53 53 H 1.08998 * 109.88379 * 59.55951 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8310 1.1880 6 6 4.0748 -1.5518 2.4375 7 6 5.5996 -1.6621 2.3760 8 1 6.0304 -0.6701 2.2402 9 6 6.1199 -2.2700 3.6801 10 7 5.9821 -2.5189 1.2511 11 6 7.1953 -2.3805 0.6805 12 8 7.9705 -1.5456 1.0985 13 6 7.5858 -3.2549 -0.4667 14 8 6.8107 -4.0901 -0.8844 15 7 8.7988 -3.1160 -1.0375 16 6 9.8335 -2.1474 -0.6319 17 6 10.7071 -1.9478 -1.8954 18 6 10.7237 -3.3799 -2.4922 19 8 11.7202 -4.1817 -1.8548 20 6 10.9464 -3.3344 -3.9818 21 1 11.1487 -2.3920 -4.4690 22 6 10.8921 -4.4959 -4.7229 23 7 10.6454 -5.6434 -4.1297 24 14 11.1690 -4.4394 -6.5694 25 1 11.4252 -3.0382 -6.9889 26 1 12.3391 -5.2837 -6.9205 27 1 9.9621 -4.9515 -7.2667 28 6 9.3094 -3.9057 -2.1677 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6053 -1.7198 1.2951 37 1 1.7516 -0.1583 2.1370 38 1 3.9994 0.1675 1.1421 39 1 3.8531 -1.3939 0.3003 40 1 3.6401 -2.5503 2.4839 41 1 3.7864 -0.9885 3.3250 42 1 5.8353 -1.6323 4.5172 43 1 5.6891 -3.2619 3.8160 44 1 7.2063 -2.3481 3.6365 45 1 5.3624 -3.1861 0.9168 46 1 9.3747 -1.2043 -0.3351 47 1 10.4316 -2.5511 0.1850 48 1 10.2421 -1.2428 -2.5846 49 1 11.7130 -1.6243 -1.6279 50 1 11.7204 -5.1066 -2.1368 51 1 10.6068 -6.4604 -4.6511 52 1 9.3601 -4.9588 -1.8912 53 1 8.6589 -3.7784 -3.0329 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118204967.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:01 Heat of formation + Delta-G solvation = -167.596840 kcal Electronic energy + Delta-G solvation = -30653.445154 eV Core-core repulsion = 26523.215351 eV Total energy + Delta-G solvation = -4130.229803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.87531 -40.21772 -38.95438 -38.39297 -37.01516 -36.06759 -34.25703 -33.41535 -31.89531 -31.37351 -29.73739 -28.02117 -27.73212 -27.26316 -25.62894 -23.88533 -22.85026 -21.71192 -21.56520 -21.02556 -20.70647 -19.13696 -18.73497 -18.10053 -17.40488 -17.07496 -16.99668 -16.31061 -16.23382 -15.81139 -15.60565 -15.26636 -15.10884 -14.83521 -14.78363 -14.74689 -14.50021 -14.10740 -14.02446 -13.69032 -13.53285 -13.42400 -13.19927 -13.04379 -12.88945 -12.80325 -12.65351 -12.54043 -12.52839 -12.38667 -12.36621 -12.25232 -12.07292 -11.96746 -11.80614 -11.44986 -11.29338 -11.20880 -11.18960 -10.75719 -10.53451 -10.30457 -10.27037 -9.74949 -8.27957 -6.43604 0.33934 1.28115 1.41059 1.44094 1.54703 2.11963 2.36358 2.52373 2.98548 3.31305 3.61043 3.77672 3.93480 3.99287 4.02848 4.13012 4.14030 4.16509 4.20818 4.33735 4.44371 4.56256 4.60266 4.68159 4.70268 4.77860 4.79446 4.80841 4.88147 4.91775 4.94841 4.98892 5.02940 5.07186 5.09751 5.11113 5.11559 5.23443 5.29965 5.30533 5.34831 5.40392 5.40697 5.43966 5.56199 5.57424 5.71548 5.99075 6.07915 6.36714 6.61508 6.68032 6.93300 7.25560 7.33515 8.78662 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012846 B = 0.002484 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.220766 B =11270.625641 C =12533.085364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.124 4.124 6 C -0.116 4.116 7 C 0.137 3.863 8 H 0.082 0.918 9 C -0.161 4.161 10 N -0.682 5.682 11 C 0.520 3.480 12 O -0.530 6.530 13 C 0.499 3.501 14 O -0.562 6.562 15 N -0.585 5.585 16 C 0.110 3.890 17 C -0.115 4.115 18 C 0.233 3.767 19 O -0.586 6.586 20 C -0.555 4.555 21 H 0.068 0.932 22 C 0.027 3.973 23 N -0.914 5.914 24 Si 0.964 3.036 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.282 1.282 28 C 0.118 3.882 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.415 0.585 46 H 0.104 0.896 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.376 0.624 51 H 0.271 0.729 52 H 0.043 0.957 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.190 10.606 14.122 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.206 4.206 4 C -0.145 4.145 5 C -0.162 4.162 6 C -0.154 4.154 7 C 0.034 3.966 8 H 0.100 0.900 9 C -0.219 4.219 10 N -0.335 5.335 11 C 0.300 3.700 12 O -0.407 6.407 13 C 0.283 3.717 14 O -0.442 6.442 15 N -0.317 5.317 16 C -0.012 4.012 17 C -0.152 4.152 18 C 0.193 3.807 19 O -0.394 6.394 20 C -0.593 4.593 21 H 0.086 0.914 22 C -0.174 4.174 23 N -0.554 5.554 24 Si 0.790 3.210 25 H -0.190 1.190 26 H -0.203 1.203 27 H -0.208 1.208 28 C -0.004 4.004 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.252 0.748 46 H 0.122 0.878 47 H 0.086 0.914 48 H 0.103 0.897 49 H 0.109 0.891 50 H 0.225 0.775 51 H 0.080 0.920 52 H 0.062 0.938 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -17.006 11.160 14.528 24.996 hybrid contribution -0.039 -1.469 -1.797 2.322 sum -17.046 9.690 12.731 23.378 Atomic orbital electron populations 1.21823 0.94680 1.01820 1.01945 1.21160 0.96177 0.96483 0.98402 1.21882 1.00870 0.95940 1.01867 1.21594 0.94430 1.00683 0.97791 1.21671 0.96262 1.00577 0.97662 1.21890 0.91203 1.02591 0.99715 1.21350 0.96666 0.93983 0.84592 0.89991 1.22168 1.00693 1.02240 0.96807 1.45924 1.14883 1.38930 1.33808 1.19704 0.83641 0.83539 0.83141 1.90682 1.51066 1.35589 1.63321 1.20382 0.81568 0.84927 0.84868 1.90697 1.51179 1.37362 1.64954 1.48749 1.13961 1.36455 1.32527 1.22624 0.88556 0.92884 0.97120 1.22822 1.00451 0.96102 0.95855 1.19719 0.82262 0.87912 0.90800 1.86123 1.58313 1.25678 1.69314 1.21813 1.50218 0.94656 0.92644 0.91422 1.25808 0.93175 0.95037 1.03417 1.69798 1.48728 0.98962 1.37871 0.85405 0.77654 0.78473 0.79505 1.18999 1.20348 1.20806 1.22740 0.97968 0.93958 0.85735 0.92037 0.92936 0.92649 0.92699 0.93086 0.93082 0.91963 0.91698 0.90821 0.91963 0.93543 0.90196 0.87824 0.88978 0.91554 0.94244 0.74813 0.87769 0.91408 0.89650 0.89083 0.77475 0.91984 0.93846 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.19 71.98 0.66 -1.08 16 2 C -0.10 -1.44 2.92 -10.79 -0.03 -1.48 16 3 C -0.15 -2.03 8.95 71.98 0.64 -1.38 16 4 C -0.11 -1.30 4.68 30.59 0.14 -1.15 16 5 C -0.12 -1.78 4.86 30.59 0.15 -1.63 16 6 C -0.12 -1.36 4.75 30.60 0.15 -1.21 16 7 C 0.14 2.41 2.57 44.99 0.12 2.53 16 8 H 0.08 1.65 7.58 -2.39 -0.02 1.64 16 9 C -0.16 -2.59 9.48 71.98 0.68 -1.90 16 10 N -0.68 -16.33 4.52 -443.87 -2.01 -18.34 16 11 C 0.52 16.78 7.82 87.27 0.68 17.47 16 12 O -0.53 -18.09 13.44 -3.25 -0.04 -18.13 16 13 C 0.50 20.04 7.91 87.27 0.69 20.73 16 14 O -0.56 -24.83 16.80 -3.25 -0.05 -24.89 16 15 N -0.58 -25.12 3.33 -813.38 -2.71 -27.83 16 16 C 0.11 4.19 6.05 86.86 0.53 4.72 16 17 C -0.11 -4.65 6.22 31.98 0.20 -4.45 16 18 C 0.23 11.47 0.85 -10.35 -0.01 11.46 16 19 O -0.59 -29.95 13.08 -148.98 -1.95 -31.90 16 20 C -0.56 -29.13 8.12 25.60 0.21 -28.92 16 21 H 0.07 3.47 7.78 -2.91 -0.02 3.45 16 22 C 0.03 1.39 5.28 84.66 0.45 1.84 16 23 N -0.91 -49.18 10.98 21.45 0.24 -48.94 16 24 Si 0.96 41.83 29.54 68.60 2.03 43.85 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 28 C 0.12 5.89 5.24 86.73 0.45 6.34 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.77 6.56 -2.39 -0.02 0.75 16 34 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.95 6.56 -2.39 -0.02 0.94 16 39 H 0.05 0.85 7.75 -2.39 -0.02 0.83 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.41 9.36 8.07 -92.71 -0.75 8.61 16 46 H 0.10 3.65 6.16 -2.39 -0.01 3.64 16 47 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 48 H 0.08 3.30 8.04 -2.39 -0.02 3.28 16 49 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 50 H 0.38 19.77 7.47 -74.06 -0.55 19.22 16 51 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 52 H 0.04 2.35 7.92 -2.39 -0.02 2.34 16 53 H 0.05 2.49 7.81 -2.39 -0.02 2.48 16 Total: -1.00 -61.93 420.08 0.81 -61.13 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -0.41 Total: 43.17 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 5.71 Total: 21.88 kcal Atomic # 7 Polarization: -90.63 SS G_CDS: -4.48 Total: -95.11 kcal Atomic # 8 Polarization: -72.88 SS G_CDS: -2.05 Total: -74.92 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -61.93 0.81 -61.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118204967.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.468 kcal (2) G-P(sol) polarization free energy of solvation -61.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds