Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47060 * 2 1 4 4 C 1.52997 * 109.47232 * 120.00566 * 2 1 3 5 5 C 1.53003 * 109.47345 * 175.00107 * 4 2 1 6 6 C 1.52993 * 109.47125 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.47125 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46794 * 304.99797 * 7 6 5 9 9 C 1.52998 * 109.46941 * 185.00066 * 7 6 5 10 10 N 1.46498 * 109.47101 * 64.99777 * 7 6 5 11 11 C 1.34775 * 119.99424 * 204.72514 * 10 7 6 12 12 O 1.21347 * 120.00510 * 0.27912 * 11 10 7 13 13 C 1.49457 * 119.99625 * 180.27417 * 11 10 7 14 14 O 1.21347 * 119.99864 * 0.02562 * 13 11 10 15 15 N 1.34770 * 119.99962 * 180.02562 * 13 11 10 16 16 C 1.47022 * 125.65043 * 359.69666 * 15 13 11 17 17 C 1.54339 * 107.26761 * 178.84936 * 16 15 13 18 18 C 1.55154 * 103.01927 * 338.13711 * 17 16 15 19 19 O 1.42897 * 111.00402 * 277.23473 * 18 17 16 20 20 C 1.50702 * 111.03592 * 153.39496 * 18 17 16 21 21 H 1.08000 * 120.00079 * 272.60556 * 20 18 17 22 22 C 1.37874 * 119.99745 * 92.61344 * 20 18 17 23 23 N 1.31514 * 119.99603 * 173.52200 * 22 20 18 24 24 Si 1.86801 * 120.00105 * 353.51524 * 22 20 18 25 25 H 1.48496 * 109.47014 * 87.32619 * 24 22 20 26 26 H 1.48504 * 109.46964 * 207.32422 * 24 22 20 27 27 H 1.48501 * 109.47019 * 327.32516 * 24 22 20 28 28 C 1.47429 * 125.64732 * 180.02562 * 15 13 11 29 29 H 1.08996 * 109.47260 * 299.99653 * 1 2 3 30 30 H 1.09000 * 109.47332 * 60.00080 * 1 2 3 31 31 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46604 * 240.00212 * 2 1 3 33 33 H 1.08999 * 109.46728 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46983 * 300.00134 * 3 2 1 35 35 H 1.08996 * 109.46801 * 60.00065 * 3 2 1 36 36 H 1.08995 * 109.47323 * 54.99415 * 4 2 1 37 37 H 1.09004 * 109.46958 * 294.99689 * 4 2 1 38 38 H 1.09000 * 109.47003 * 59.99471 * 5 4 2 39 39 H 1.09004 * 109.46752 * 299.99709 * 5 4 2 40 40 H 1.09000 * 109.47396 * 59.99976 * 6 5 4 41 41 H 1.09004 * 109.47284 * 299.99648 * 6 5 4 42 42 H 1.08999 * 109.47481 * 60.00180 * 9 7 6 43 43 H 1.09004 * 109.46634 * 179.97438 * 9 7 6 44 44 H 1.08999 * 109.47157 * 299.99508 * 9 7 6 45 45 H 0.96991 * 120.00308 * 25.00115 * 10 7 6 46 46 H 1.08998 * 109.87898 * 298.39192 * 16 15 13 47 47 H 1.08993 * 109.88423 * 59.55639 * 16 15 13 48 48 H 1.08996 * 110.84854 * 219.66646 * 17 16 15 49 49 H 1.09007 * 110.66574 * 96.52086 * 17 16 15 50 50 H 0.96702 * 113.99584 * 168.40157 * 19 18 17 51 51 H 0.97005 * 119.99381 * 180.02562 * 23 22 20 52 52 H 1.08997 * 110.36616 * 322.93234 * 28 15 13 53 53 H 1.08998 * 110.36434 * 85.14859 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.8311 1.1879 6 6 4.0749 -1.5519 2.4373 7 6 5.5998 -1.6611 2.3764 8 1 5.8924 -2.1460 1.4450 9 6 6.0995 -2.4896 3.5616 10 7 6.1881 -0.3207 2.4349 11 6 7.4116 -0.0986 1.9149 12 8 8.0237 -1.0077 1.3939 13 6 8.0144 1.2674 1.9800 14 8 7.4024 2.1764 2.5014 15 7 9.2375 1.4897 1.4597 16 6 10.0875 0.4825 0.8080 17 6 11.3749 1.1984 0.3472 18 6 10.9390 2.6854 0.2689 19 8 10.2835 2.9624 -0.9702 20 6 12.1153 3.6053 0.4719 21 1 12.4023 3.9027 1.4697 22 6 12.8250 4.0672 -0.6161 23 7 13.7690 4.9679 -0.4512 24 14 12.4459 3.4135 -2.3245 25 1 11.3583 4.2207 -2.9332 26 1 13.6629 3.5046 -3.1707 27 1 12.0153 1.9956 -2.2276 28 6 9.9478 2.7817 1.4558 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 1.6054 -1.7198 1.2950 37 1 1.7517 -0.1584 2.1369 38 1 3.9995 0.1674 1.1420 39 1 3.8533 -1.3940 0.3001 40 1 3.6404 -2.5505 2.4836 41 1 3.7866 -0.9886 3.3249 42 1 5.6619 -3.4869 3.5180 43 1 7.1859 -2.5678 3.5179 44 1 5.8070 -2.0047 4.4929 45 1 5.6989 0.4059 2.8513 46 1 10.3341 -0.3085 1.5162 47 1 9.5700 0.0627 -0.0544 48 1 11.6906 0.8369 -0.6314 49 1 12.1710 1.0679 1.0802 50 1 9.8389 3.8207 -0.9966 51 1 14.2681 5.2931 -1.2168 52 1 9.2454 3.6001 1.2980 53 1 10.4872 2.9208 2.3926 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118204968.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -165.035355 kcal Electronic energy + Delta-G solvation = -30783.016042 eV Core-core repulsion = 26652.897313 eV Total energy + Delta-G solvation = -4130.118729 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.91148 -40.35558 -39.10037 -38.39678 -37.05630 -36.32941 -34.46726 -33.43001 -32.09117 -31.37683 -30.09552 -28.03434 -27.84865 -27.27544 -25.55926 -23.80360 -22.86992 -21.74105 -21.64504 -21.07240 -20.73560 -19.50876 -18.78563 -18.11025 -17.37734 -17.15330 -17.04606 -16.61789 -16.28443 -15.87988 -15.80836 -15.38765 -15.29071 -14.91001 -14.78289 -14.55665 -14.41891 -14.25766 -14.13598 -13.90278 -13.69118 -13.35597 -13.31155 -13.14122 -13.03284 -12.87017 -12.79784 -12.60577 -12.51039 -12.38717 -12.31234 -12.21723 -12.08994 -12.00637 -11.71647 -11.46107 -11.29964 -11.25248 -11.20729 -10.68595 -10.60519 -10.44054 -10.26776 -9.75821 -8.34430 -6.47878 0.33295 1.24549 1.50191 1.54051 1.74883 2.11176 2.44263 2.46909 2.96460 3.28998 3.47338 3.60753 3.79277 3.94438 3.97777 4.00925 4.08602 4.16444 4.23674 4.25511 4.36312 4.39903 4.57743 4.63694 4.69518 4.75409 4.77647 4.78188 4.79131 4.85328 4.90992 4.92381 4.99265 5.02864 5.04664 5.09174 5.12209 5.17986 5.22438 5.28972 5.31056 5.34008 5.38489 5.41945 5.50385 5.55073 5.57003 6.01718 6.04916 6.28042 6.57471 6.63117 6.90415 6.92978 7.29964 8.78067 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.002548 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.014284 B =10985.141145 C =12095.358095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.108 4.108 5 C -0.124 4.124 6 C -0.117 4.117 7 C 0.137 3.863 8 H 0.078 0.922 9 C -0.161 4.161 10 N -0.682 5.682 11 C 0.515 3.485 12 O -0.532 6.532 13 C 0.509 3.491 14 O -0.553 6.553 15 N -0.581 5.581 16 C 0.121 3.879 17 C -0.124 4.124 18 C 0.217 3.783 19 O -0.560 6.560 20 C -0.545 4.545 21 H 0.050 0.950 22 C 0.028 3.972 23 N -0.933 5.933 24 Si 1.006 2.994 25 H -0.285 1.285 26 H -0.337 1.337 27 H -0.259 1.259 28 C 0.095 3.905 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.416 0.584 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.381 0.619 51 H 0.267 0.733 52 H 0.075 0.925 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.404 -15.705 5.019 30.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.208 4.208 4 C -0.145 4.145 5 C -0.162 4.162 6 C -0.154 4.154 7 C 0.034 3.966 8 H 0.097 0.903 9 C -0.219 4.219 10 N -0.336 5.336 11 C 0.295 3.705 12 O -0.409 6.409 13 C 0.292 3.708 14 O -0.433 6.433 15 N -0.314 5.314 16 C -0.001 4.001 17 C -0.162 4.162 18 C 0.177 3.823 19 O -0.369 6.369 20 C -0.583 4.583 21 H 0.068 0.932 22 C -0.172 4.172 23 N -0.571 5.571 24 Si 0.840 3.160 25 H -0.212 1.212 26 H -0.270 1.270 27 H -0.185 1.185 28 C -0.027 4.027 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.253 0.747 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.107 0.893 50 H 0.231 0.769 51 H 0.076 0.924 52 H 0.094 0.906 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.034 -16.397 4.766 30.303 hybrid contribution 0.234 1.322 -0.456 1.418 sum -24.800 -15.075 4.311 29.341 Atomic orbital electron populations 1.21824 0.94646 1.02015 1.01795 1.21146 0.96152 0.95946 0.98643 1.21903 1.00678 0.96563 1.01694 1.21601 0.94476 1.00881 0.97579 1.21669 0.96195 1.00411 0.97893 1.21886 0.91233 1.03299 0.98995 1.21313 0.94165 0.80999 1.00088 0.90342 1.22161 1.00938 1.00973 0.97804 1.45896 1.16175 1.13896 1.57611 1.19800 0.83281 0.87748 0.79713 1.90739 1.61366 1.44903 1.43854 1.20189 0.81141 0.89712 0.79745 1.90710 1.61232 1.45836 1.45515 1.48454 1.15530 1.12858 1.54513 1.22153 0.90436 0.90054 0.97421 1.23000 0.96482 0.94232 1.02462 1.20136 0.88651 0.93401 0.80154 1.86096 1.71367 1.42282 1.37140 1.21279 1.13380 1.29334 0.94296 0.93173 1.25808 0.93837 0.93519 1.04053 1.70076 1.24328 1.29750 1.32944 0.84743 0.73531 0.80418 0.77314 1.21187 1.26972 1.18454 1.23018 0.94467 0.84552 1.00638 0.92497 0.92953 0.92120 0.91928 0.93486 0.93060 0.92491 0.90940 0.91550 0.92895 0.92611 0.88064 0.89996 0.89241 0.94170 0.91373 0.74699 0.89905 0.90924 0.90210 0.89323 0.76928 0.92379 0.90648 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.19 71.98 0.66 -0.89 16 2 C -0.10 -1.27 2.92 -10.79 -0.03 -1.30 16 3 C -0.15 -2.25 8.95 71.98 0.64 -1.61 16 4 C -0.11 -1.15 4.68 30.59 0.14 -1.00 16 5 C -0.12 -1.58 4.86 30.59 0.15 -1.43 16 6 C -0.12 -1.17 4.75 30.59 0.15 -1.02 16 7 C 0.14 2.15 2.57 44.99 0.12 2.27 16 8 H 0.08 1.49 7.58 -2.39 -0.02 1.47 16 9 C -0.16 -2.26 9.48 71.98 0.68 -1.58 16 10 N -0.68 -14.15 4.52 -443.87 -2.01 -16.16 16 11 C 0.51 14.69 7.82 87.27 0.68 15.37 16 12 O -0.53 -16.86 13.79 -3.24 -0.04 -16.91 16 13 C 0.51 17.16 7.91 87.27 0.69 17.85 16 14 O -0.55 -20.19 16.73 -3.24 -0.05 -20.24 16 15 N -0.58 -20.78 3.33 -813.29 -2.70 -23.49 16 16 C 0.12 4.14 5.49 86.73 0.48 4.62 16 17 C -0.12 -4.76 5.90 31.79 0.19 -4.57 16 18 C 0.22 9.32 0.70 -10.14 -0.01 9.31 16 19 O -0.56 -23.31 8.52 -148.98 -1.27 -24.58 16 20 C -0.55 -28.62 8.89 25.60 0.23 -28.40 16 21 H 0.05 2.91 8.00 -2.91 -0.02 2.88 16 22 C 0.03 1.55 5.46 84.65 0.46 2.02 16 23 N -0.93 -55.87 13.96 21.45 0.30 -55.57 16 24 Si 1.01 47.63 24.93 68.60 1.71 49.34 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 26 H -0.34 -16.51 7.11 99.48 0.71 -15.80 16 27 H -0.26 -11.77 5.42 99.48 0.54 -11.23 16 28 C 0.10 3.73 6.07 86.86 0.53 4.25 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.81 6.57 -2.39 -0.02 0.79 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 0.85 6.17 -2.39 -0.01 0.84 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.42 7.82 8.07 -92.71 -0.75 7.08 16 46 H 0.08 2.61 7.71 -2.39 -0.02 2.59 16 47 H 0.07 2.50 7.57 -2.39 -0.02 2.49 16 48 H 0.08 3.12 6.65 -2.39 -0.02 3.10 16 49 H 0.09 3.34 8.03 -2.38 -0.02 3.32 16 50 H 0.38 14.03 8.99 -74.06 -0.67 13.36 16 51 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 52 H 0.08 2.92 8.02 -2.39 -0.02 2.90 16 53 H 0.07 2.97 7.99 -2.39 -0.02 2.95 16 Total: -1.00 -66.08 414.70 1.00 -65.08 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.69 Total: 28.63 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 5.76 Total: 13.90 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -4.41 Total: -95.22 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -1.37 Total: -61.73 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.71 Total: 49.34 kcal Total: -66.08 1.00 -65.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118204968.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.955 kcal (2) G-P(sol) polarization free energy of solvation -66.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds