Wall clock time and date at job start Sat Apr 11 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00083 * 2 1 4 4 H 1.08994 * 109.47440 * 30.00100 * 3 2 1 5 5 C 1.53007 * 109.47010 * 269.99663 * 3 2 1 6 6 C 1.52998 * 109.47183 * 150.00244 * 3 2 1 7 7 C 1.50700 * 109.47015 * 294.99566 * 6 3 2 8 8 O 1.21286 * 120.00014 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00476 * 179.97438 * 7 6 3 10 10 C 1.46921 * 120.63711 * 180.02562 * 9 7 6 11 11 C 1.53198 * 108.77812 * 233.58813 * 10 9 7 12 12 C 1.53039 * 109.31065 * 305.36276 * 11 10 9 13 13 C 1.52990 * 109.45874 * 181.38375 * 12 11 10 14 14 H 1.09000 * 110.67563 * 57.00779 * 13 12 11 15 15 O 1.44377 * 110.62140 * 294.04212 * 13 12 11 16 16 C 1.43744 * 106.98032 * 201.44055 * 15 13 12 17 17 C 1.54097 * 107.29232 * 26.50972 * 16 15 13 18 18 C 1.54813 * 104.18879 * 357.97414 * 17 16 15 19 19 H 1.09002 * 110.90684 * 97.31509 * 18 17 16 20 20 N 1.46502 * 110.90918 * 220.88400 * 18 17 16 21 21 C 1.36936 * 120.00204 * 270.67213 * 20 18 17 22 22 H 1.07999 * 120.00031 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00011 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00061 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99842 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47293 * 90.00012 * 25 23 21 27 27 H 1.48503 * 109.47069 * 209.99869 * 25 23 21 28 28 H 1.48504 * 109.47075 * 329.99534 * 25 23 21 29 29 C 1.53038 * 109.52553 * 61.37043 * 12 11 10 30 30 C 1.46931 * 120.62718 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47219 * 300.00550 * 1 2 3 32 32 H 1.08998 * 109.46880 * 60.00149 * 1 2 3 33 33 H 1.08996 * 109.47324 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.46869 * 60.00313 * 5 3 2 35 35 H 1.08995 * 109.47212 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47203 * 300.00118 * 5 3 2 37 37 H 1.09005 * 109.47320 * 175.00148 * 6 3 2 38 38 H 1.09003 * 109.47611 * 54.99454 * 6 3 2 39 39 H 1.09000 * 109.59269 * 113.79867 * 10 9 7 40 40 H 1.09003 * 109.58467 * 353.37236 * 10 9 7 41 41 H 1.08996 * 109.49578 * 185.41152 * 11 10 9 42 42 H 1.08999 * 109.49207 * 65.31250 * 11 10 9 43 43 H 1.09000 * 109.45515 * 301.35821 * 12 11 10 44 44 H 1.09005 * 109.87885 * 267.09111 * 16 15 13 45 45 H 1.08990 * 109.88482 * 145.93651 * 16 15 13 46 46 H 1.09004 * 110.49131 * 239.29645 * 17 16 15 47 47 H 1.09001 * 110.60267 * 116.70737 * 17 16 15 48 48 H 0.97001 * 119.99999 * 90.66398 * 20 18 17 49 49 H 0.96996 * 119.99963 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.50360 * 58.58199 * 29 12 11 51 51 H 1.09006 * 109.49513 * 178.67648 * 29 12 11 52 52 H 1.09002 * 109.58706 * 246.19803 * 30 9 7 53 53 H 1.08996 * 109.58553 * 6.48264 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.3589 1.2632 0.7212 7 6 3.1416 0.9236 2.1733 8 8 2.0186 0.7336 2.5902 9 7 4.1952 0.8300 3.0085 10 6 3.9994 0.4993 4.4265 11 6 4.6855 1.5692 5.2818 12 6 6.1521 1.6897 4.8612 13 6 6.8492 2.7329 5.7365 14 1 6.7605 2.4719 6.7910 15 8 6.3059 4.0478 5.4908 16 6 7.2943 4.9979 5.9229 17 6 8.6689 4.3100 5.8149 18 6 8.3390 2.8762 5.3331 19 1 8.4594 2.7914 4.2531 20 7 9.1670 1.8876 6.0283 21 6 10.3845 1.5305 5.5133 22 1 10.7343 1.9775 4.5945 23 6 11.1693 0.5942 6.1723 24 7 10.7429 0.0491 7.2918 25 14 12.8305 0.1077 5.4701 26 1 13.8805 1.0049 6.0159 27 1 13.1348 -1.2963 5.8460 28 1 12.7968 0.2278 3.9903 29 6 6.2299 2.1203 3.3947 30 6 5.5617 1.0558 2.5179 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.2569 1.8014 -1.9564 35 1 2.6615 2.7668 -1.4426 36 1 2.8830 1.0773 -1.9564 37 1 3.8427 2.2369 0.6443 38 1 3.9931 0.5050 0.2617 39 1 4.4391 -0.4753 4.6386 40 1 2.9334 0.4786 4.6531 41 1 4.6306 1.2853 6.3327 42 1 4.1855 2.5268 5.1364 43 1 6.6451 0.7252 4.9831 44 1 7.1043 5.2861 6.9569 45 1 7.2686 5.8778 5.2802 46 1 9.1592 4.2821 6.7880 47 1 9.2978 4.8219 5.0865 48 1 8.8528 1.4859 6.8534 49 1 11.2914 -0.6049 7.7525 50 1 5.7153 3.0727 3.2673 51 1 7.2744 2.2287 3.1023 52 1 6.1285 0.1265 2.5747 53 1 5.5266 1.3999 1.4843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131451781.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:32 Heat of formation + Delta-G solvation = -123.865919 kcal Electronic energy + Delta-G solvation = -31302.620800 eV Core-core repulsion = 27174.287312 eV Total energy + Delta-G solvation = -4128.333488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.40085 -39.35628 -38.19067 -36.85408 -34.47730 -33.48508 -32.86461 -31.64562 -31.06082 -29.43539 -28.51201 -27.53449 -26.67144 -24.72012 -23.38785 -23.20687 -22.30196 -21.50359 -20.23300 -19.85435 -18.78903 -17.39082 -17.19943 -16.96625 -16.21904 -15.83530 -15.60908 -15.33925 -15.11597 -14.88078 -14.66487 -14.31082 -14.05125 -13.85239 -13.54599 -13.32413 -13.26427 -13.01666 -12.91102 -12.76165 -12.68558 -12.37878 -12.14073 -12.10721 -12.02386 -11.61684 -11.59594 -11.15344 -11.11660 -10.99564 -10.92480 -10.86868 -10.71321 -10.45328 -10.29648 -10.20509 -9.79381 -9.78179 -9.70996 -9.65649 -9.22759 -8.96778 -8.56672 -7.07302 -5.86366 -3.16418 2.67591 2.99533 3.37242 3.42751 3.44491 3.62205 4.24119 4.37195 4.52224 4.53852 4.78899 4.88112 4.91726 4.92821 5.07911 5.15775 5.19160 5.22784 5.30050 5.30630 5.35646 5.37451 5.41329 5.42085 5.46106 5.51348 5.60137 5.61341 5.66406 5.68715 5.71675 5.74260 5.86253 5.88034 5.97005 6.02920 6.08951 6.10110 6.21481 6.26311 6.33983 6.42664 6.57741 6.62971 6.67997 6.87232 7.06732 7.32030 7.43867 7.61765 8.21394 8.31215 9.42826 9.97526 10.32299 11.35775 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.002580 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.120811 B =10850.513583 C =11603.373437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.100 3.900 4 H 0.067 0.933 5 C -0.175 4.175 6 C -0.141 4.141 7 C 0.519 3.481 8 O -0.542 6.542 9 N -0.610 5.610 10 C 0.112 3.888 11 C -0.125 4.125 12 C -0.072 4.072 13 C 0.074 3.926 14 H 0.067 0.933 15 O -0.378 6.378 16 C 0.050 3.950 17 C -0.182 4.182 18 C 0.155 3.845 19 H 0.068 0.932 20 N -0.713 5.713 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.010 4.010 24 N -0.930 5.930 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.281 1.281 29 C -0.126 4.126 30 C 0.105 3.895 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.072 0.928 51 H 0.082 0.918 52 H 0.072 0.928 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 5.239 -12.917 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.042 3.958 4 H 0.085 0.915 5 C -0.233 4.233 6 C -0.181 4.181 7 C 0.307 3.693 8 O -0.420 6.420 9 N -0.343 5.343 10 C -0.010 4.010 11 C -0.164 4.164 12 C -0.090 4.090 13 C 0.015 3.985 14 H 0.085 0.915 15 O -0.297 6.297 16 C -0.027 4.027 17 C -0.223 4.223 18 C 0.044 3.956 19 H 0.086 0.914 20 N -0.354 5.354 21 C -0.373 4.373 22 H 0.089 0.911 23 C -0.206 4.206 24 N -0.578 5.578 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.164 4.164 30 C -0.017 4.017 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.091 0.909 51 H 0.100 0.900 52 H 0.091 0.909 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.644 4.955 -12.882 21.622 hybrid contribution 1.193 -0.078 0.195 1.211 sum -15.451 4.876 -12.687 20.579 Atomic orbital electron populations 1.22680 0.81144 1.02366 0.99639 1.87886 1.19703 1.27037 1.94940 1.21789 0.93637 0.85782 0.94589 0.91470 1.22305 1.02544 1.01730 0.96698 1.21889 0.98933 1.04391 0.92855 1.20472 0.84325 0.76580 0.87913 1.90656 1.23160 1.50346 1.77795 1.48142 1.06778 1.69676 1.09750 1.21606 1.02015 0.97857 0.79504 1.21930 0.95712 0.99426 0.99297 1.21086 0.94989 0.98708 0.94252 1.23355 0.93642 0.83137 0.98332 0.91522 1.88786 1.40415 1.15535 1.84960 1.23033 0.88547 0.92499 0.98645 1.23694 0.96034 0.99706 1.02903 1.21806 0.88684 0.88299 0.96840 0.91396 1.42279 1.18598 1.46569 1.27996 1.19192 0.93897 1.18602 1.05640 0.91149 1.24747 0.98894 0.99575 0.97406 1.69652 1.38139 1.32098 1.17913 0.86206 0.84146 0.77626 0.78278 1.21712 1.21732 1.20691 1.21950 1.01490 0.98441 0.94545 1.21860 0.81890 0.99797 0.98197 0.93603 0.94739 0.90097 0.92246 0.91429 0.91614 0.87634 0.88033 0.91525 0.89311 0.90881 0.91123 0.89114 0.93396 0.90991 0.90578 0.91758 0.78104 0.93383 0.90900 0.89960 0.90941 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.82 101.05 1.09 1.46 16 2 O -0.38 -4.54 9.58 -49.66 -0.48 -5.01 16 3 C 0.10 0.99 2.27 -26.73 -0.06 0.93 16 4 H 0.07 0.71 7.60 -51.93 -0.39 0.31 16 5 C -0.18 -1.27 9.53 37.16 0.35 -0.92 16 6 C -0.14 -1.35 3.76 -27.88 -0.10 -1.46 16 7 C 0.52 6.82 7.58 -10.99 -0.08 6.73 16 8 O -0.54 -8.85 14.83 -8.87 -0.13 -8.98 16 9 N -0.61 -7.60 2.97 -172.73 -0.51 -8.12 16 10 C 0.11 1.45 6.43 -3.71 -0.02 1.43 16 11 C -0.13 -1.65 5.26 -26.61 -0.14 -1.79 16 12 C -0.07 -1.03 2.11 -90.58 -0.19 -1.22 16 13 C 0.07 1.20 2.67 -25.68 -0.07 1.13 16 14 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16 15 O -0.38 -5.99 10.09 -35.23 -0.36 -6.34 16 16 C 0.05 0.73 7.70 37.73 0.29 1.02 16 17 C -0.18 -3.09 6.76 -25.20 -0.17 -3.26 16 18 C 0.16 2.87 3.11 -65.92 -0.21 2.67 16 19 H 0.07 1.26 5.85 -51.93 -0.30 0.96 16 20 N -0.71 -16.58 5.20 -51.48 -0.27 -16.85 16 21 C -0.24 -6.31 9.97 -15.06 -0.15 -6.46 16 22 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -26.91 13.06 55.49 0.72 -26.18 16 25 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 C -0.13 -1.60 4.92 -26.59 -0.13 -1.73 16 30 C 0.11 1.15 6.35 -3.68 -0.02 1.12 16 31 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.03 0.26 7.87 -51.93 -0.41 -0.15 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.11 0.78 7.70 -51.93 -0.40 0.38 16 38 H 0.10 0.88 7.94 -51.93 -0.41 0.47 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.22 7.01 -51.93 -0.36 0.85 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 43 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.08 1.42 8.06 -51.93 -0.42 1.00 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.38 9.62 7.74 -40.82 -0.32 9.30 16 49 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.07 0.95 7.64 -51.93 -0.40 0.55 16 51 H 0.08 1.09 6.10 -51.93 -0.32 0.77 16 52 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 53 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 LS Contribution 410.24 15.07 6.18 6.18 Total: -1.00 -31.22 410.24 -9.04 -40.26 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -9.47 Total: 9.26 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 0.29 Total: -0.71 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.06 Total: -51.15 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.96 Total: -20.33 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.22 -9.04 -40.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131451781.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.607 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds