Wall clock time and date at job start Sat Apr 11 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00083 * 2 1 4 4 H 1.08994 * 109.47440 * 30.00100 * 3 2 1 5 5 C 1.53007 * 109.47010 * 269.99663 * 3 2 1 6 6 C 1.52998 * 109.47183 * 150.00244 * 3 2 1 7 7 C 1.50700 * 109.47015 * 294.99566 * 6 3 2 8 8 O 1.21286 * 120.00014 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00476 * 179.97438 * 7 6 3 10 10 C 1.46921 * 120.63711 * 180.02562 * 9 7 6 11 11 C 1.53198 * 108.77812 * 233.58813 * 10 9 7 12 12 C 1.53039 * 109.31065 * 305.36276 * 11 10 9 13 13 C 1.52990 * 109.45874 * 181.38375 * 12 11 10 14 14 H 1.09000 * 110.67563 * 57.00779 * 13 12 11 15 15 O 1.44377 * 110.62140 * 294.04212 * 13 12 11 16 16 C 1.43744 * 106.98032 * 201.44055 * 15 13 12 17 17 C 1.54097 * 107.29232 * 26.50972 * 16 15 13 18 18 C 1.54813 * 104.18879 * 357.97414 * 17 16 15 19 19 H 1.09002 * 110.90684 * 97.31509 * 18 17 16 20 20 N 1.46502 * 110.90918 * 220.88400 * 18 17 16 21 21 C 1.36936 * 120.00204 * 270.67213 * 20 18 17 22 22 H 1.07999 * 120.00031 * 359.97438 * 21 20 18 23 23 C 1.38812 * 120.00011 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00061 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99842 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47293 * 90.00012 * 25 23 21 27 27 H 1.48503 * 109.47069 * 209.99869 * 25 23 21 28 28 H 1.48504 * 109.47075 * 329.99534 * 25 23 21 29 29 C 1.53038 * 109.52553 * 61.37043 * 12 11 10 30 30 C 1.46931 * 120.62718 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47219 * 300.00550 * 1 2 3 32 32 H 1.08998 * 109.46880 * 60.00149 * 1 2 3 33 33 H 1.08996 * 109.47324 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.46869 * 60.00313 * 5 3 2 35 35 H 1.08995 * 109.47212 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47203 * 300.00118 * 5 3 2 37 37 H 1.09005 * 109.47320 * 175.00148 * 6 3 2 38 38 H 1.09003 * 109.47611 * 54.99454 * 6 3 2 39 39 H 1.09000 * 109.59269 * 113.79867 * 10 9 7 40 40 H 1.09003 * 109.58467 * 353.37236 * 10 9 7 41 41 H 1.08996 * 109.49578 * 185.41152 * 11 10 9 42 42 H 1.08999 * 109.49207 * 65.31250 * 11 10 9 43 43 H 1.09000 * 109.45515 * 301.35821 * 12 11 10 44 44 H 1.09005 * 109.87885 * 267.09111 * 16 15 13 45 45 H 1.08990 * 109.88482 * 145.93651 * 16 15 13 46 46 H 1.09004 * 110.49131 * 239.29645 * 17 16 15 47 47 H 1.09001 * 110.60267 * 116.70737 * 17 16 15 48 48 H 0.97001 * 119.99999 * 90.66398 * 20 18 17 49 49 H 0.96996 * 119.99963 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.50360 * 58.58199 * 29 12 11 51 51 H 1.09006 * 109.49513 * 178.67648 * 29 12 11 52 52 H 1.09002 * 109.58706 * 246.19803 * 30 9 7 53 53 H 1.08996 * 109.58553 * 6.48264 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4426 6 6 3.3589 1.2632 0.7212 7 6 3.1416 0.9236 2.1733 8 8 2.0186 0.7336 2.5902 9 7 4.1952 0.8300 3.0085 10 6 3.9994 0.4993 4.4265 11 6 4.6855 1.5692 5.2818 12 6 6.1521 1.6897 4.8612 13 6 6.8492 2.7329 5.7365 14 1 6.7605 2.4719 6.7910 15 8 6.3059 4.0478 5.4908 16 6 7.2943 4.9979 5.9229 17 6 8.6689 4.3100 5.8149 18 6 8.3390 2.8762 5.3331 19 1 8.4594 2.7914 4.2531 20 7 9.1670 1.8876 6.0283 21 6 10.3845 1.5305 5.5133 22 1 10.7343 1.9775 4.5945 23 6 11.1693 0.5942 6.1723 24 7 10.7429 0.0491 7.2918 25 14 12.8305 0.1077 5.4701 26 1 13.8805 1.0049 6.0159 27 1 13.1348 -1.2963 5.8460 28 1 12.7968 0.2278 3.9903 29 6 6.2299 2.1203 3.3947 30 6 5.5617 1.0558 2.5179 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.2569 1.8014 -1.9564 35 1 2.6615 2.7668 -1.4426 36 1 2.8830 1.0773 -1.9564 37 1 3.8427 2.2369 0.6443 38 1 3.9931 0.5050 0.2617 39 1 4.4391 -0.4753 4.6386 40 1 2.9334 0.4786 4.6531 41 1 4.6306 1.2853 6.3327 42 1 4.1855 2.5268 5.1364 43 1 6.6451 0.7252 4.9831 44 1 7.1043 5.2861 6.9569 45 1 7.2686 5.8778 5.2802 46 1 9.1592 4.2821 6.7880 47 1 9.2978 4.8219 5.0865 48 1 8.8528 1.4859 6.8534 49 1 11.2914 -0.6049 7.7525 50 1 5.7153 3.0727 3.2673 51 1 7.2744 2.2287 3.1023 52 1 6.1285 0.1265 2.5747 53 1 5.5266 1.3999 1.4843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131451781.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:31 Heat of formation + Delta-G solvation = -143.015903 kcal Electronic energy + Delta-G solvation = -31303.451206 eV Core-core repulsion = 27174.287312 eV Total energy + Delta-G solvation = -4129.163894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45736 -40.57493 -39.05965 -37.93121 -36.24052 -34.53355 -33.76223 -33.36867 -32.08354 -30.93993 -29.55673 -28.62545 -27.44606 -26.14053 -24.92674 -24.34502 -23.39256 -22.43544 -21.52597 -21.09264 -19.80905 -19.24439 -18.19684 -17.77366 -17.44190 -17.04632 -16.95837 -16.27676 -16.16014 -16.04409 -15.81622 -15.72134 -15.27951 -15.13167 -14.80140 -14.45400 -14.37880 -14.27412 -13.98485 -13.70553 -13.65437 -13.45013 -13.30242 -13.06542 -12.90546 -12.83876 -12.81084 -12.68290 -12.38969 -12.31221 -12.17042 -12.12325 -11.91724 -11.85497 -11.65132 -11.62743 -11.42900 -11.01135 -10.89575 -10.74927 -10.49928 -10.48409 -9.60870 -9.00636 -7.93002 -5.21896 1.50112 1.50337 1.58727 1.69424 2.04402 2.56138 2.90790 2.96732 3.40165 3.51170 3.63766 3.76258 3.82764 3.88573 4.01555 4.12868 4.17683 4.19747 4.22024 4.29029 4.33054 4.36324 4.44365 4.49065 4.51206 4.57452 4.60573 4.63706 4.64645 4.72781 4.81588 4.82714 4.83676 4.89096 4.91600 4.91942 5.01083 5.03180 5.06877 5.12538 5.21917 5.26451 5.33936 5.41651 5.52449 5.54048 5.60591 6.01203 6.28284 6.32810 6.47414 7.22352 7.34857 8.07514 8.31191 9.30105 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.002580 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.120811 B =10850.513583 C =11603.373437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.403 6.403 3 C 0.095 3.905 4 H 0.055 0.945 5 C -0.168 4.168 6 C -0.137 4.137 7 C 0.511 3.489 8 O -0.581 6.581 9 N -0.611 5.611 10 C 0.114 3.886 11 C -0.114 4.114 12 C -0.069 4.069 13 C 0.084 3.916 14 H 0.051 0.949 15 O -0.378 6.378 16 C 0.053 3.947 17 C -0.178 4.178 18 C 0.149 3.851 19 H 0.074 0.926 20 N -0.724 5.724 21 C -0.233 4.233 22 H 0.078 0.922 23 C -0.072 4.072 24 N -0.969 5.969 25 Si 0.967 3.033 26 H -0.291 1.291 27 H -0.300 1.300 28 H -0.266 1.266 29 C -0.119 4.119 30 C 0.107 3.893 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.135 0.865 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.372 0.628 49 H 0.250 0.750 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.072 0.928 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.979 6.653 -15.493 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.323 6.323 3 C 0.037 3.963 4 H 0.073 0.927 5 C -0.225 4.225 6 C -0.176 4.176 7 C 0.301 3.699 8 O -0.461 6.461 9 N -0.343 5.343 10 C -0.008 4.008 11 C -0.152 4.152 12 C -0.088 4.088 13 C 0.025 3.975 14 H 0.069 0.931 15 O -0.297 6.297 16 C -0.024 4.024 17 C -0.219 4.219 18 C 0.039 3.961 19 H 0.091 0.909 20 N -0.364 5.364 21 C -0.365 4.365 22 H 0.096 0.904 23 C -0.265 4.265 24 N -0.619 5.619 25 Si 0.797 3.203 26 H -0.219 1.219 27 H -0.227 1.227 28 H -0.191 1.191 29 C -0.157 4.157 30 C -0.015 4.015 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.153 0.847 38 H 0.134 0.866 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.204 0.796 49 H 0.058 0.942 50 H 0.093 0.907 51 H 0.097 0.903 52 H 0.090 0.910 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.519 6.420 -15.502 23.546 hybrid contribution 1.095 -0.441 1.020 1.560 sum -15.424 5.979 -14.483 21.987 Atomic orbital electron populations 1.22748 0.80368 1.02949 0.99893 1.87838 1.20756 1.28503 1.95160 1.21952 0.93390 0.84804 0.96204 0.92713 1.22246 1.02985 1.02639 0.94621 1.21995 0.99374 1.06263 0.89984 1.21176 0.83696 0.75682 0.89310 1.90640 1.24688 1.52062 1.78725 1.48245 1.07471 1.69243 1.09389 1.21503 1.01264 0.97800 0.80272 1.21798 0.94812 0.99137 0.99452 1.21027 0.95105 0.97161 0.95483 1.23169 0.92419 0.84042 0.97847 0.93097 1.88793 1.40650 1.15262 1.84946 1.23127 0.86567 0.92716 0.99953 1.23560 0.97610 0.98790 1.01892 1.22010 0.89385 0.88058 0.96649 0.90861 1.42401 1.18533 1.47603 1.27819 1.19556 0.94439 1.17284 1.05226 0.90372 1.25488 1.02314 1.00542 0.98128 1.69806 1.39336 1.33233 1.19535 0.85226 0.80245 0.76474 0.78339 1.21863 1.22658 1.19070 1.21870 1.01478 0.99024 0.93292 1.21962 0.80690 0.99311 0.99490 0.95051 0.92717 0.89459 0.91977 0.89603 0.91325 0.84743 0.86645 0.91394 0.90361 0.90858 0.91768 0.90981 0.92663 0.88132 0.92702 0.90691 0.79553 0.94154 0.90737 0.90294 0.91015 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.82 113.37 1.23 1.91 16 2 O -0.40 -9.35 9.58 -135.19 -1.29 -10.64 16 3 C 0.09 1.71 2.27 30.60 0.07 1.78 16 4 H 0.05 1.10 7.60 -2.39 -0.02 1.09 16 5 C -0.17 -1.97 9.53 71.98 0.69 -1.28 16 6 C -0.14 -2.27 3.76 29.85 0.11 -2.16 16 7 C 0.51 12.82 7.58 87.66 0.66 13.48 16 8 O -0.58 -19.02 14.83 10.75 0.16 -18.86 16 9 N -0.61 -14.43 2.97 -818.79 -2.43 -16.87 16 10 C 0.11 2.93 6.43 86.37 0.56 3.49 16 11 C -0.11 -2.97 5.26 30.67 0.16 -2.81 16 12 C -0.07 -1.94 2.11 -10.77 -0.02 -1.97 16 13 C 0.08 2.67 2.67 31.27 0.08 2.75 16 14 H 0.05 1.79 8.02 -2.39 -0.02 1.78 16 15 O -0.38 -11.24 10.09 -148.98 -1.50 -12.75 16 16 C 0.05 1.43 7.70 72.35 0.56 1.99 16 17 C -0.18 -5.78 6.76 31.58 0.21 -5.57 16 18 C 0.15 5.38 3.11 46.29 0.14 5.52 16 19 H 0.07 2.60 5.85 -2.39 -0.01 2.58 16 20 N -0.72 -33.86 5.20 -316.79 -1.65 -35.50 16 21 C -0.23 -12.07 9.97 84.03 0.84 -11.24 16 22 H 0.08 3.86 7.83 -2.91 -0.02 3.83 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 24 N -0.97 -57.21 13.06 21.65 0.28 -56.92 16 25 Si 0.97 44.27 29.55 68.60 2.03 46.29 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 29 C -0.12 -2.76 4.92 30.69 0.15 -2.61 16 30 C 0.11 2.09 6.35 86.38 0.55 2.64 16 31 H 0.03 0.66 8.08 -2.39 -0.02 0.64 16 32 H 0.05 0.77 7.87 -2.39 -0.02 0.75 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 0.70 7.87 -2.39 -0.02 0.68 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.13 1.43 7.70 -2.38 -0.02 1.42 16 38 H 0.12 1.63 7.94 -2.39 -0.02 1.61 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 2.19 7.01 -2.39 -0.02 2.17 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 1.77 7.94 -2.39 -0.02 1.75 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.05 2.02 8.06 -2.38 -0.02 2.00 16 47 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.37 19.12 7.74 -92.71 -0.72 18.40 16 49 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 50 H 0.07 1.74 7.64 -2.39 -0.02 1.72 16 51 H 0.08 1.92 6.10 -2.38 -0.01 1.90 16 52 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 53 H 0.12 1.49 5.93 -2.39 -0.01 1.48 16 Total: -1.00 -68.08 410.24 2.21 -65.87 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: 0.17 Total: 36.93 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 6.45 Total: 2.44 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -3.80 Total: -109.29 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -2.64 Total: -42.25 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -68.08 2.21 -65.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131451781.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.145 kcal (2) G-P(sol) polarization free energy of solvation -68.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds