Wall clock time and date at job start Sat Apr 11 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47607 * 2 1 4 4 C 1.50693 * 109.47380 * 239.99405 * 2 1 3 5 5 O 1.21284 * 120.00376 * 239.99972 * 4 2 1 6 6 N 1.34780 * 120.00056 * 60.00633 * 4 2 1 7 7 C 1.46498 * 120.00013 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46791 * 180.02562 * 7 6 4 9 9 H 1.08999 * 108.45350 * 57.87439 * 8 7 6 10 10 C 1.46919 * 108.61886 * 175.75769 * 8 7 6 11 11 N 1.49896 * 106.62338 * 177.93437 * 10 8 7 12 12 C 1.36937 * 120.49372 * 111.40039 * 11 10 8 13 13 H 1.08001 * 120.00051 * 155.30993 * 12 11 10 14 14 C 1.38811 * 120.00022 * 335.30609 * 12 11 10 15 15 N 1.31614 * 120.00004 * 340.86507 * 14 12 11 16 16 Si 1.86799 * 119.99944 * 160.86761 * 14 12 11 17 17 H 1.48504 * 109.47185 * 90.00319 * 16 14 12 18 18 H 1.48499 * 109.47251 * 209.99595 * 16 14 12 19 19 H 1.48495 * 109.47289 * 330.00004 * 16 14 12 20 20 C 1.43428 * 118.87357 * 291.09372 * 11 10 8 21 21 C 1.55323 * 116.08867 * 89.55027 * 20 11 10 22 22 C 1.55192 * 108.87677 * 319.57310 * 21 20 11 23 23 O 1.39640 * 110.56596 * 322.14578 * 22 21 20 24 24 C 1.53006 * 109.46546 * 119.99952 * 2 1 3 25 25 C 1.53184 * 109.54274 * 299.55304 * 24 2 1 26 26 C 1.53093 * 109.16010 * 183.15499 * 25 24 2 27 27 O 1.42904 * 109.41524 * 57.61382 * 26 25 24 28 28 C 1.42902 * 114.09535 * 298.83529 * 27 26 25 29 29 C 1.53092 * 109.41224 * 61.16081 * 28 27 26 30 30 H 1.08999 * 109.47100 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47414 * 300.00399 * 1 2 3 32 32 H 1.09006 * 109.46290 * 60.00412 * 1 2 3 33 33 H 0.97001 * 119.99717 * 359.97438 * 6 4 2 34 34 H 1.08997 * 109.47145 * 60.00300 * 7 6 4 35 35 H 1.08994 * 109.47171 * 299.99664 * 7 6 4 36 36 H 1.09003 * 109.98705 * 297.23377 * 10 8 7 37 37 H 1.08999 * 109.99256 * 58.60484 * 10 8 7 38 38 H 0.97005 * 120.00063 * 179.97438 * 15 14 12 39 39 H 1.09005 * 108.11937 * 327.90086 * 20 11 10 40 40 H 1.09000 * 108.12953 * 211.21042 * 20 11 10 41 41 H 1.08999 * 109.56721 * 79.38848 * 21 20 11 42 42 H 1.08994 * 109.57265 * 199.75347 * 21 20 11 43 43 H 1.09000 * 109.25615 * 82.41831 * 22 21 20 44 44 H 1.08995 * 109.25769 * 201.89876 * 22 21 20 45 45 H 1.08993 * 109.54724 * 59.82610 * 24 2 1 46 46 H 1.08997 * 109.52326 * 303.06246 * 25 24 2 47 47 H 1.09001 * 109.51743 * 63.24945 * 25 24 2 48 48 H 1.09000 * 109.48552 * 297.62520 * 26 25 24 49 49 H 1.09003 * 109.47554 * 177.59514 * 26 25 24 50 50 H 1.09002 * 109.48330 * 301.17806 * 28 27 26 51 51 H 1.09001 * 109.47859 * 181.14549 * 28 27 26 52 52 H 1.09005 * 109.52283 * 182.48165 * 29 28 27 53 53 H 1.09006 * 109.52280 * 62.29994 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7297 -1.6966 -1.1190 6 7 1.7069 -0.2501 -2.4545 7 6 2.1958 -0.9405 -3.6506 8 6 1.6863 -0.2189 -4.8999 9 1 2.0271 0.8158 -4.8638 10 6 2.2691 -0.8637 -6.0844 11 7 1.7027 -0.1577 -7.2793 12 6 2.5034 0.6236 -8.0689 13 1 2.2369 0.8006 -9.1005 14 6 3.6575 1.1883 -7.5435 15 7 3.8001 1.3018 -6.2401 16 14 5.0081 1.7872 -8.6865 17 1 4.7675 3.2108 -9.0339 18 1 6.3232 1.6587 -8.0089 19 1 5.0075 0.9684 -9.9253 20 6 0.3106 -0.3202 -7.5842 21 6 -0.6568 0.7003 -6.9244 22 6 -0.1995 0.9532 -5.4631 23 8 0.2627 -0.2295 -4.8821 24 6 2.0399 -0.7213 1.2493 25 6 1.5393 0.0061 2.5011 26 6 2.1185 -0.6755 3.7436 27 8 3.5455 -0.6695 3.6671 28 6 4.0723 -1.3756 2.5420 29 6 3.5717 -0.7223 1.2512 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.1490 0.5384 -2.5436 34 1 1.8328 -1.9682 -3.6507 35 1 3.2857 -0.9401 -3.6503 36 1 3.3541 -0.7605 -6.0689 37 1 1.9943 -1.9182 -6.1078 38 1 4.6068 1.6960 -5.8729 39 1 0.0103 -1.3212 -7.2746 40 1 0.1900 -0.2517 -8.6654 41 1 -0.6345 1.6371 -7.4813 42 1 -1.6693 0.2969 -6.9255 43 1 0.6017 1.6922 -5.4600 44 1 -1.0410 1.3328 -4.8838 45 1 1.6747 -1.7482 1.2521 46 1 1.8633 1.0464 2.4719 47 1 0.4507 -0.0366 2.5362 48 1 1.7614 -1.7041 3.7938 49 1 1.8000 -0.1361 4.6357 50 1 3.7408 -2.4135 2.5764 51 1 5.1615 -1.3407 2.5684 52 1 3.9366 -1.2858 0.3924 53 1 3.9367 0.3034 1.1967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150841405.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:48 Heat of formation + Delta-G solvation = -129.844380 kcal Electronic energy + Delta-G solvation = -31732.378316 eV Core-core repulsion = 27603.785583 eV Total energy + Delta-G solvation = -4128.592733 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.46032 -40.62912 -39.69907 -36.82326 -36.34857 -35.88458 -33.89514 -33.08357 -32.08734 -31.72705 -30.18651 -27.27975 -27.07447 -26.46462 -24.80813 -24.25358 -23.34802 -22.40407 -21.34843 -21.21171 -20.67332 -18.95367 -18.14580 -17.70023 -17.31836 -16.89305 -16.86797 -16.59372 -16.46172 -16.10439 -15.85733 -15.54503 -15.50903 -15.10992 -14.80270 -14.73281 -14.52458 -14.20031 -14.05593 -13.88103 -13.56591 -13.30803 -13.25529 -13.05551 -12.91673 -12.65738 -12.60561 -12.52799 -12.41348 -12.32251 -12.20501 -11.93499 -11.81156 -11.75878 -11.56097 -11.38072 -11.18350 -11.14937 -10.64652 -10.56489 -10.38634 -10.22252 -9.99246 -8.71801 -7.90573 -5.31186 1.45976 1.50797 1.57793 1.69772 2.26386 2.51581 3.00073 3.11721 3.27049 3.50558 3.58449 3.70859 3.80427 4.08095 4.12721 4.17654 4.25720 4.27601 4.34939 4.37078 4.41838 4.43341 4.45413 4.56302 4.64880 4.71874 4.76052 4.78307 4.79193 4.81019 4.89589 4.95717 4.96888 4.99069 5.04577 5.07734 5.13626 5.17796 5.18693 5.27026 5.33957 5.37394 5.40796 5.44831 5.47576 5.56018 5.67701 6.29422 6.35692 6.52153 6.62336 7.10357 7.30875 7.82695 8.35138 9.15200 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015965 B = 0.002705 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.449159 B =10347.443272 C =11480.173435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.109 0.891 4 C 0.509 3.491 5 O -0.580 6.580 6 N -0.708 5.708 7 C 0.134 3.866 8 C 0.081 3.919 9 H 0.085 0.915 10 C 0.145 3.855 11 N -0.602 5.602 12 C -0.264 4.264 13 H 0.062 0.938 14 C -0.036 4.036 15 N -0.916 5.916 16 Si 0.958 3.042 17 H -0.287 1.287 18 H -0.294 1.294 19 H -0.279 1.279 20 C 0.154 3.846 21 C -0.165 4.165 22 C 0.068 3.932 23 O -0.366 6.366 24 C -0.064 4.064 25 C -0.145 4.145 26 C 0.054 3.946 27 O -0.404 6.404 28 C 0.065 3.935 29 C -0.160 4.160 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.408 0.592 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.022 0.978 38 H 0.250 0.750 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.036 0.964 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.099 0.901 48 H 0.053 0.947 49 H 0.111 0.889 50 H 0.050 0.950 51 H 0.095 0.905 52 H 0.075 0.925 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 -0.438 16.875 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.127 0.873 4 C 0.297 3.703 5 O -0.460 6.460 6 N -0.359 5.359 7 C 0.009 3.991 8 C 0.022 3.978 9 H 0.103 0.897 10 C 0.020 3.980 11 N -0.323 5.323 12 C -0.393 4.393 13 H 0.080 0.920 14 C -0.232 4.232 15 N -0.562 5.562 16 Si 0.787 3.213 17 H -0.214 1.214 18 H -0.220 1.220 19 H -0.205 1.205 20 C 0.026 3.974 21 C -0.206 4.206 22 C -0.009 4.009 23 O -0.285 6.285 24 C -0.083 4.083 25 C -0.182 4.182 26 C -0.022 4.022 27 O -0.323 6.323 28 C -0.012 4.012 29 C -0.198 4.198 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.244 0.756 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.054 0.946 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.117 0.883 48 H 0.071 0.929 49 H 0.129 0.871 50 H 0.068 0.932 51 H 0.114 0.886 52 H 0.094 0.906 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.925 -1.153 17.187 18.962 hybrid contribution 0.871 0.680 -1.481 1.848 sum -7.055 -0.473 15.706 17.224 Atomic orbital electron populations 1.21830 0.90960 1.02846 1.04188 1.21377 0.98913 1.00717 0.90876 0.87344 1.21306 0.79339 0.84312 0.85369 1.90595 1.39820 1.28469 1.87148 1.45886 1.52928 1.31965 1.05109 1.21312 0.97966 0.95901 0.83926 1.21735 0.80588 1.02185 0.93318 0.89729 1.20626 0.99423 0.91971 0.85975 1.44158 1.03906 1.53597 1.30665 1.19386 1.04039 1.23619 0.92301 0.91984 1.25464 1.01722 0.99220 0.96810 1.69988 1.27442 1.48033 1.10734 0.85433 0.79270 0.77844 0.78728 1.21408 1.22005 1.20497 1.20492 0.83764 0.96314 0.96816 1.23495 0.99718 1.00537 0.96833 1.22395 0.98523 0.86503 0.93494 1.87511 1.20167 1.41013 1.79793 1.20938 0.94810 0.99310 0.93280 1.22290 1.02321 1.00265 0.93327 1.22779 0.80022 1.00579 0.98859 1.87883 1.22004 1.75995 1.46467 1.22556 0.99175 0.94627 0.84803 1.22407 0.96550 1.01677 0.99174 0.92747 0.88703 0.91547 0.75626 0.92677 0.92413 0.90472 0.95979 0.94016 0.94756 0.95111 0.92766 0.90310 0.94591 0.89462 0.91683 0.90679 0.88297 0.92867 0.87078 0.93184 0.88637 0.90631 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.75 71.98 0.63 -1.54 16 2 C -0.10 -1.99 2.32 -11.54 -0.03 -2.02 16 3 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 4 C 0.51 15.06 6.87 87.65 0.60 15.67 16 5 O -0.58 -21.28 13.67 -3.04 -0.04 -21.33 16 6 N -0.71 -21.58 5.32 -463.06 -2.47 -24.05 16 7 C 0.13 4.95 5.24 86.38 0.45 5.40 16 8 C 0.08 3.23 1.94 28.71 0.06 3.29 16 9 H 0.09 3.85 5.21 -2.39 -0.01 3.84 16 10 C 0.14 6.61 4.71 83.83 0.39 7.01 16 11 N -0.60 -28.73 2.59 -706.62 -1.83 -30.56 16 12 C -0.26 -13.73 9.61 84.03 0.81 -12.92 16 13 H 0.06 3.24 7.88 -2.91 -0.02 3.22 16 14 C -0.04 -1.86 4.91 84.86 0.42 -1.44 16 15 N -0.92 -48.13 9.54 21.65 0.21 -47.92 16 16 Si 0.96 42.98 29.59 68.60 2.03 45.01 16 17 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 C 0.15 6.30 5.34 87.75 0.47 6.77 16 21 C -0.16 -5.71 6.75 32.14 0.22 -5.49 16 22 C 0.07 2.36 6.38 72.73 0.46 2.83 16 23 O -0.37 -13.48 9.54 -137.19 -1.31 -14.79 16 24 C -0.06 -1.31 1.49 -10.67 -0.02 -1.32 16 25 C -0.14 -2.09 4.98 30.69 0.15 -1.93 16 26 C 0.05 0.83 6.84 72.01 0.49 1.33 16 27 O -0.40 -8.81 10.77 -148.98 -1.60 -10.42 16 28 C 0.06 1.40 6.84 72.01 0.49 1.89 16 29 C -0.16 -3.84 5.05 30.68 0.15 -3.68 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 0.97 6.52 -2.39 -0.02 0.96 16 32 H 0.07 1.01 7.56 -2.38 -0.02 0.99 16 33 H 0.41 10.93 7.74 -92.71 -0.72 10.21 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.08 3.93 6.03 -2.39 -0.01 3.92 16 37 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.25 13.02 8.31 -92.70 -0.77 12.25 16 39 H 0.03 1.36 7.99 -2.38 -0.02 1.34 16 40 H 0.03 1.25 7.96 -2.39 -0.02 1.23 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.04 1.45 6.66 -2.39 -0.02 1.43 16 44 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 46 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.10 0.99 6.63 -2.39 -0.02 0.97 16 48 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 49 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.08 2.26 5.61 -2.38 -0.01 2.25 16 53 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -61.27 396.56 0.92 -60.35 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.17 Total: 29.87 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 5.76 Total: 13.82 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -4.09 Total: -102.53 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -2.95 Total: -46.53 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -61.27 0.92 -60.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150841405.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.493 kcal (2) G-P(sol) polarization free energy of solvation -61.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds