Wall clock time and date at job start Sat Apr 11 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99727 * 2 1 4 4 C 1.53004 * 109.47187 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47222 * 64.99993 * 4 3 2 6 6 C 1.34773 * 120.00469 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99725 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00272 * 179.97438 * 6 5 4 9 9 H 1.09003 * 110.65726 * 58.20183 * 8 6 5 10 10 C 1.55153 * 110.74420 * 295.00456 * 8 6 5 11 11 C 1.54831 * 101.84433 * 280.81232 * 10 8 6 12 12 H 1.08997 * 112.00829 * 99.05269 * 11 10 8 13 13 C 1.55038 * 103.90371 * 337.87773 * 11 10 8 14 14 H 1.08996 * 111.80240 * 121.29916 * 13 11 10 15 15 C 1.56812 * 103.85493 * 242.95002 * 13 11 10 16 16 C 1.54867 * 103.20030 * 338.15499 * 15 13 11 17 17 N 1.47769 * 108.81466 * 223.36143 * 11 10 8 18 18 C 1.46900 * 110.99836 * 258.55488 * 17 11 10 19 19 H 1.08998 * 109.47269 * 52.74919 * 18 17 11 20 20 C 1.53001 * 109.47510 * 292.74621 * 18 17 11 21 21 C 1.52999 * 109.47119 * 172.74435 * 18 17 11 22 22 C 1.52999 * 109.47661 * 295.00357 * 21 18 17 23 23 C 1.50699 * 109.47590 * 179.97438 * 22 21 18 24 24 H 1.08004 * 119.99642 * 0.02562 * 23 22 21 25 25 C 1.37870 * 120.00098 * 179.97438 * 23 22 21 26 26 N 1.31518 * 119.99945 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00069 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.46885 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47080 * 120.00347 * 27 25 23 30 30 H 1.48495 * 109.47217 * 240.00382 * 27 25 23 31 31 O 1.43869 * 106.86038 * 357.92899 * 13 11 10 32 32 H 1.09011 * 109.46640 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47642 * 60.00415 * 1 2 3 34 34 H 1.09002 * 109.47541 * 300.00000 * 1 2 3 35 35 H 1.09007 * 109.47077 * 299.99550 * 3 2 1 36 36 H 1.08998 * 109.47737 * 60.00096 * 3 2 1 37 37 H 1.08999 * 109.47227 * 184.99216 * 4 3 2 38 38 H 1.08994 * 109.47295 * 305.00258 * 4 3 2 39 39 H 0.97003 * 119.99424 * 359.97438 * 5 4 3 40 40 H 1.09002 * 110.95639 * 38.94837 * 10 8 6 41 41 H 1.09002 * 110.95829 * 162.63683 * 10 8 6 42 42 H 1.09000 * 110.22449 * 219.92483 * 15 13 11 43 43 H 1.09002 * 111.23919 * 96.86311 * 15 13 11 44 44 H 1.08994 * 110.67410 * 279.41353 * 16 15 13 45 45 H 1.09005 * 110.81761 * 156.34116 * 16 15 13 46 46 H 1.09003 * 109.46554 * 52.72164 * 20 18 17 47 47 H 1.08997 * 109.46812 * 172.71782 * 20 18 17 48 48 H 1.08993 * 109.47101 * 292.72111 * 20 18 17 49 49 H 1.09000 * 109.46981 * 55.00830 * 21 18 17 50 50 H 1.09001 * 109.47299 * 175.00339 * 21 18 17 51 51 H 1.09003 * 109.46607 * 300.00447 * 22 21 18 52 52 H 1.09001 * 109.46778 * 59.99663 * 22 21 18 53 53 H 0.97001 * 119.99646 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 5.2895 0.3562 -1.4738 7 8 6.1056 0.6825 -0.6381 8 6 5.7433 -0.2828 -2.7609 9 1 5.4098 0.3013 -3.6187 10 6 5.2321 -1.7444 -2.8590 11 6 6.2383 -2.4946 -1.9524 12 1 5.8348 -2.6745 -0.9559 13 6 7.4770 -1.5628 -1.9199 14 1 7.7258 -1.2554 -0.9042 15 6 8.6094 -2.4202 -2.5843 16 6 8.1029 -3.8730 -2.4073 17 7 6.6383 -3.7500 -2.6213 18 6 5.9247 -4.9006 -2.0515 19 1 4.8524 -4.7055 -2.0638 20 6 6.3859 -5.1240 -0.6099 21 6 6.2252 -6.1496 -2.8825 22 6 5.6530 -5.9753 -4.2907 23 6 5.9496 -7.2053 -5.1093 24 1 6.4916 -8.0292 -4.6691 25 6 5.5281 -7.2792 -6.4199 26 7 4.8676 -6.2761 -6.9559 27 14 5.8951 -8.8042 -7.4345 28 1 6.6449 -9.7816 -6.6053 29 1 4.6201 -9.4156 -7.8881 30 1 6.7116 -8.4278 -8.6163 31 8 7.1799 -0.4438 -2.7739 32 1 -0.3633 -1.0278 0.0005 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3634 0.5138 0.8900 35 1 1.6885 1.8464 -0.8901 36 1 1.6885 1.8465 0.8899 37 1 3.9783 2.1767 0.0901 38 1 3.8507 0.5686 0.8426 39 1 3.3239 0.3027 -1.9191 40 1 4.2176 -1.8295 -2.4693 41 1 5.2851 -2.1079 -3.8853 42 1 9.5517 -2.2740 -2.0562 43 1 8.7202 -2.1772 -3.6411 44 1 8.3158 -4.2349 -1.4015 45 1 8.5469 -4.5317 -3.1538 46 1 6.2915 -4.1936 -0.0499 47 1 5.7673 -5.8919 -0.1454 48 1 7.4273 -5.4456 -0.6073 49 1 7.3038 -6.2943 -2.9438 50 1 5.7684 -7.0191 -2.4098 51 1 4.5744 -5.8306 -4.2292 52 1 6.1098 -5.1058 -4.7634 53 1 4.5714 -6.3281 -7.8781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172495600.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:20 Heat of formation + Delta-G solvation = -143.812808 kcal Electronic energy + Delta-G solvation = -31413.051280 eV Core-core repulsion = 27283.852830 eV Total energy + Delta-G solvation = -4129.198450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.02797 -40.35707 -38.96600 -38.27808 -35.82369 -35.65654 -34.22707 -33.11730 -31.40532 -30.87288 -29.09830 -28.77979 -27.13180 -27.02808 -24.94196 -23.74763 -23.26079 -22.74488 -21.47052 -21.33327 -20.36273 -18.65512 -18.32561 -17.85165 -17.59941 -17.44039 -17.03107 -16.52243 -16.49350 -16.08146 -15.99887 -15.69016 -15.49976 -15.25153 -14.93363 -14.68713 -14.55237 -14.26496 -13.95452 -13.76138 -13.57997 -13.22277 -13.11663 -13.06902 -12.89358 -12.83603 -12.68943 -12.63481 -12.44097 -12.32564 -12.19114 -12.13478 -12.00019 -11.78367 -11.74005 -11.46137 -11.40779 -11.20350 -10.89319 -10.67947 -10.46561 -10.36355 -10.16087 -9.18899 -8.11326 -6.20875 1.40905 1.41524 1.46563 1.54042 2.03271 2.45221 2.64897 2.80314 3.02007 3.21235 3.38530 3.64374 3.69157 3.82022 3.93584 3.97060 4.13129 4.15050 4.17547 4.19095 4.27523 4.36858 4.41841 4.43523 4.47524 4.54155 4.58881 4.62113 4.64472 4.72063 4.77167 4.84216 4.85989 4.91970 4.93579 4.98530 5.01413 5.07499 5.12675 5.18924 5.31638 5.36230 5.47051 5.61553 5.70822 5.91901 6.03693 6.08721 6.19688 6.25064 6.37348 6.44106 6.98510 7.13191 7.46834 8.99919 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010891 B = 0.002865 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.347582 B = 9770.656744 C =10952.682339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.052 3.948 4 C 0.120 3.880 5 N -0.710 5.710 6 C 0.501 3.499 7 O -0.570 6.570 8 C 0.060 3.940 9 H 0.154 0.846 10 C -0.122 4.122 11 C 0.033 3.967 12 H 0.074 0.926 13 C 0.073 3.927 14 H 0.085 0.915 15 C -0.115 4.115 16 C 0.031 3.969 17 N -0.503 5.503 18 C 0.077 3.923 19 H 0.067 0.933 20 C -0.176 4.176 21 C -0.086 4.086 22 C 0.042 3.958 23 C -0.540 4.540 24 H 0.053 0.947 25 C 0.001 3.999 26 N -0.929 5.929 27 Si 0.957 3.043 28 H -0.265 1.265 29 H -0.279 1.279 30 H -0.280 1.280 31 O -0.357 6.357 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.415 0.585 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.048 0.952 50 H 0.051 0.949 51 H -0.020 1.020 52 H 0.004 0.996 53 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 16.758 15.674 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C -0.025 4.025 4 C -0.004 4.004 5 N -0.364 5.364 6 C 0.287 3.713 7 O -0.449 6.449 8 C -0.001 4.001 9 H 0.171 0.829 10 C -0.161 4.161 11 C -0.076 4.076 12 H 0.092 0.908 13 C 0.015 3.985 14 H 0.103 0.897 15 C -0.153 4.153 16 C -0.097 4.097 17 N -0.227 5.227 18 C -0.032 4.032 19 H 0.086 0.914 20 C -0.234 4.234 21 C -0.124 4.124 22 C 0.005 3.995 23 C -0.579 4.579 24 H 0.071 0.929 25 C -0.196 4.196 26 N -0.570 5.570 27 Si 0.782 3.218 28 H -0.189 1.189 29 H -0.205 1.205 30 H -0.206 1.206 31 O -0.274 6.274 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.252 0.748 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.067 0.933 50 H 0.069 0.931 51 H -0.001 1.001 52 H 0.023 0.977 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.984 17.004 15.453 23.511 hybrid contribution -0.482 -0.828 -0.151 0.970 sum -5.466 16.175 15.301 22.927 Atomic orbital electron populations 1.22896 0.79376 1.03538 1.01127 1.87912 1.21487 1.28466 1.95689 1.22858 0.91244 0.85227 1.03145 1.21476 0.93603 0.98950 0.86337 1.45870 1.06847 1.62368 1.21314 1.21317 0.82857 0.78212 0.88901 1.90677 1.54020 1.52615 1.47586 1.23325 0.82691 0.97818 0.96313 0.82910 1.23136 0.99296 0.91409 1.02231 1.23778 0.95746 0.91454 0.96614 0.90780 1.24101 0.95235 0.85198 0.94006 0.89701 1.22991 0.97549 0.92925 1.01823 1.23346 0.88296 0.96890 1.01120 1.65062 1.04432 1.00919 1.52263 1.21830 0.97904 0.90953 0.92505 0.91433 1.22397 1.02477 1.02149 0.96390 1.21446 0.99802 0.95181 0.95982 1.18788 0.93654 0.95138 0.91922 1.21804 1.35297 1.03354 0.97403 0.92887 1.25889 0.95177 0.99301 0.99280 1.70117 1.39680 1.32912 1.14242 0.85521 0.77989 0.79681 0.78571 1.18872 1.20452 1.20585 1.89005 1.20652 1.50977 1.66787 0.89510 0.92779 0.92817 0.90703 0.89697 0.89222 0.92265 0.74814 0.88782 0.89385 0.88871 0.90868 0.91442 0.90796 0.92272 0.91233 0.91564 0.93336 0.93053 1.00133 0.97724 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -6.42 10.65 -148.98 -1.59 -8.00 16 3 C 0.05 0.54 6.07 71.98 0.44 0.97 16 4 C 0.12 1.82 6.06 86.38 0.52 2.35 16 5 N -0.71 -12.54 5.37 -463.06 -2.49 -15.02 16 6 C 0.50 12.30 6.73 87.66 0.59 12.89 16 7 O -0.57 -18.27 15.65 15.10 0.24 -18.03 16 8 C 0.06 1.47 4.13 30.58 0.13 1.59 16 9 H 0.15 2.91 8.14 -2.39 -0.02 2.89 16 10 C -0.12 -3.26 6.32 31.96 0.20 -3.06 16 11 C 0.03 0.96 2.83 46.07 0.13 1.09 16 12 H 0.07 2.08 6.18 -2.39 -0.01 2.07 16 13 C 0.07 2.11 3.77 32.63 0.12 2.24 16 14 H 0.09 2.52 7.68 -2.39 -0.02 2.50 16 15 C -0.11 -3.20 6.83 32.57 0.22 -2.98 16 16 C 0.03 0.92 5.54 86.63 0.48 1.40 16 17 N -0.50 -16.76 4.20 -827.94 -3.47 -20.24 16 18 C 0.08 2.58 2.28 44.92 0.10 2.69 16 19 H 0.07 2.39 8.11 -2.39 -0.02 2.37 16 20 C -0.18 -4.64 8.22 71.98 0.59 -4.05 16 21 C -0.09 -3.56 4.62 30.59 0.14 -3.42 16 22 C 0.04 2.24 4.86 29.85 0.15 2.39 16 23 C -0.54 -31.33 9.11 25.60 0.23 -31.10 16 24 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 25 C 0.00 0.06 5.46 84.65 0.46 0.52 16 26 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 27 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 28 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 29 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 30 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 31 O -0.36 -11.00 10.60 -130.85 -1.39 -12.38 16 32 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.42 5.70 8.38 -92.71 -0.78 4.93 16 40 H 0.09 2.17 7.87 -2.39 -0.02 2.15 16 41 H 0.09 2.81 8.00 -2.39 -0.02 2.79 16 42 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.07 2.26 8.05 -2.39 -0.02 2.24 16 44 H 0.07 1.77 5.50 -2.39 -0.01 1.76 16 45 H 0.07 2.46 7.59 -2.38 -0.02 2.44 16 46 H 0.06 1.44 6.30 -2.39 -0.02 1.43 16 47 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.07 1.67 6.39 -2.39 -0.02 1.66 16 49 H 0.05 1.98 7.02 -2.39 -0.02 1.96 16 50 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 51 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 52 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 53 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -75.00 413.05 -0.52 -75.52 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.11 Total: 22.91 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 5.76 Total: -14.95 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -5.68 Total: -92.20 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -2.74 Total: -38.42 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -75.00 -0.52 -75.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495600.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.296 kcal (2) G-P(sol) polarization free energy of solvation -74.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds