Wall clock time and date at job start Sat Apr 11 2020 06:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00002 * 2 1 4 4 C 1.53007 * 109.47175 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47176 * 64.99736 * 4 3 2 6 6 C 1.34765 * 120.00143 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99948 * 0.02562 * 6 5 4 8 8 C 1.50711 * 120.00416 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.83656 * 55.93939 * 8 6 5 10 10 C 1.54349 * 109.84846 * 295.00606 * 8 6 5 11 11 C 1.55145 * 102.42518 * 217.84042 * 10 8 6 12 12 H 1.08998 * 113.64713 * 157.49899 * 11 10 8 13 13 C 1.56744 * 100.63448 * 34.49998 * 11 10 8 14 14 H 1.09003 * 113.63749 * 89.02603 * 13 11 10 15 15 C 1.54949 * 101.16211 * 210.76068 * 13 11 10 16 16 C 1.54280 * 103.35354 * 35.97171 * 15 13 11 17 17 N 1.47469 * 107.11519 * 336.52280 * 16 15 13 18 18 C 1.46900 * 110.99789 * 237.69179 * 17 16 15 19 19 H 1.08997 * 109.47211 * 306.24347 * 18 17 16 20 20 C 1.52999 * 109.47034 * 66.24777 * 18 17 16 21 21 C 1.53007 * 109.47260 * 186.24408 * 18 17 16 22 22 C 1.53001 * 109.46754 * 65.36226 * 21 18 17 23 23 C 1.50698 * 109.47146 * 176.83682 * 22 21 18 24 24 H 1.08007 * 119.99913 * 359.97438 * 23 22 21 25 25 C 1.37872 * 120.00234 * 179.97438 * 23 22 21 26 26 N 1.31512 * 119.99905 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00035 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47144 * 90.00546 * 27 25 23 29 29 H 1.48502 * 109.47292 * 210.00389 * 27 25 23 30 30 H 1.48502 * 109.47334 * 330.00130 * 27 25 23 31 31 O 1.43244 * 104.89732 * 324.01896 * 13 11 10 32 32 H 1.09006 * 109.46878 * 299.99691 * 1 2 3 33 33 H 1.09000 * 109.47574 * 59.99132 * 1 2 3 34 34 H 1.08993 * 109.47578 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.46895 * 60.00759 * 3 2 1 36 36 H 1.08997 * 109.47310 * 300.00254 * 3 2 1 37 37 H 1.09003 * 109.46837 * 305.00709 * 4 3 2 38 38 H 1.08996 * 109.47232 * 185.00185 * 4 3 2 39 39 H 0.97009 * 119.99795 * 0.02562 * 5 4 3 40 40 H 1.08998 * 110.81909 * 99.60529 * 10 8 6 41 41 H 1.09002 * 110.98483 * 336.14989 * 10 8 6 42 42 H 1.09002 * 110.67072 * 277.46150 * 15 13 11 43 43 H 1.09003 * 110.67480 * 154.49136 * 15 13 11 44 44 H 1.09003 * 109.90678 * 95.88921 * 16 15 13 45 45 H 1.09000 * 109.90872 * 216.95996 * 16 15 13 46 46 H 1.08992 * 109.47441 * 67.12629 * 20 18 17 47 47 H 1.09010 * 109.46961 * 187.12471 * 20 18 17 48 48 H 1.09000 * 109.47212 * 307.12419 * 20 18 17 49 49 H 1.08995 * 109.47099 * 185.36431 * 21 18 17 50 50 H 1.09003 * 109.47168 * 305.36676 * 21 18 17 51 51 H 1.09011 * 109.47082 * 296.83403 * 22 21 18 52 52 H 1.08992 * 109.47160 * 56.83407 * 22 21 18 53 53 H 0.97003 * 120.00021 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 5.2882 0.3566 -1.4767 7 8 6.1050 0.6826 -0.6415 8 6 5.7412 -0.2810 -2.7650 9 1 5.3665 0.2921 -3.6131 10 6 5.2215 -1.7323 -2.8425 11 6 6.4102 -2.4776 -3.5049 12 1 6.4190 -3.5494 -3.3071 13 6 7.6209 -1.6913 -2.8944 14 1 7.9753 -2.1004 -1.9482 15 6 8.6600 -1.8053 -4.0382 16 6 7.7962 -1.7232 -5.3139 17 7 6.4326 -2.1444 -4.9425 18 6 5.9954 -3.2877 -5.7547 19 1 6.1054 -3.0457 -6.8118 20 6 6.8532 -4.5094 -5.4191 21 6 4.5276 -3.5966 -5.4523 22 6 3.6552 -2.4266 -5.9116 23 6 2.2039 -2.7629 -5.6851 24 1 1.9309 -3.7161 -5.2567 25 6 1.2244 -1.8540 -6.0246 26 7 1.5567 -0.6935 -6.5466 27 14 -0.5747 -2.2713 -5.7444 28 1 -0.9806 -1.8260 -4.3871 29 1 -1.4074 -1.5803 -6.7615 30 1 -0.7666 -3.7391 -5.8619 31 8 7.1722 -0.3337 -2.8075 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5140 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 1.6886 1.8463 0.8900 36 1 1.6885 1.8464 -0.8899 37 1 3.8514 0.5681 0.8409 38 1 3.9785 2.1765 0.0889 39 1 3.3224 0.3040 -1.9209 40 1 4.3304 -1.7919 -3.4673 41 1 5.0219 -2.1292 -1.8471 42 1 9.1834 -2.7602 -3.9888 43 1 9.3681 -0.9775 -3.9988 44 1 7.7798 -0.6986 -5.6856 45 1 8.1982 -2.3886 -6.0778 46 1 6.6474 -4.8283 -4.3974 47 1 6.6155 -5.3204 -6.1077 48 1 7.9076 -4.2500 -5.5134 49 1 4.2302 -4.5015 -5.9820 50 1 4.4011 -3.7450 -4.3799 51 1 3.9147 -1.5342 -5.3417 52 1 3.8241 -2.2420 -6.9724 53 1 0.8675 -0.0541 -6.7858 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172495601.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:24 Heat of formation + Delta-G solvation = -142.460655 kcal Electronic energy + Delta-G solvation = -32298.175658 eV Core-core repulsion = 28169.035842 eV Total energy + Delta-G solvation = -4129.139816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -42.01600 -40.46878 -38.92160 -38.07642 -35.75950 -35.67516 -34.22136 -32.94269 -31.38775 -30.95477 -29.51034 -28.72484 -27.14861 -26.91218 -24.73499 -23.43084 -23.24703 -22.44602 -21.92640 -21.32855 -20.17782 -18.77694 -18.27326 -17.83565 -17.49418 -17.34472 -17.01352 -16.51586 -16.45083 -16.25613 -15.87235 -15.65073 -15.47894 -14.99652 -14.94683 -14.81502 -14.49095 -14.27433 -13.89940 -13.64176 -13.57931 -13.15026 -13.12861 -12.90701 -12.85797 -12.79280 -12.73093 -12.64435 -12.39161 -12.33915 -12.19444 -12.16822 -11.92461 -11.71934 -11.59173 -11.38660 -11.26798 -11.12582 -10.82077 -10.69717 -10.40999 -10.27526 -10.14901 -9.03413 -8.07059 -6.15944 1.42140 1.43855 1.51770 1.53421 1.98485 2.47468 2.76060 2.82574 3.01166 3.25687 3.45170 3.65764 3.72772 3.90666 3.94291 4.11015 4.15199 4.15488 4.19458 4.25426 4.36748 4.38487 4.43805 4.50295 4.50446 4.53836 4.57098 4.61077 4.78924 4.81299 4.82045 4.86282 4.86822 4.93636 5.00546 5.02453 5.05091 5.13528 5.18237 5.27889 5.38189 5.39813 5.52590 5.68279 5.96517 5.97455 6.10991 6.16719 6.22387 6.35860 6.42214 6.44606 7.02976 7.14698 7.51674 9.03103 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006569 B = 0.005721 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4261.360352 B = 4893.076187 C = 8429.479623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.050 3.950 4 C 0.121 3.879 5 N -0.716 5.716 6 C 0.505 3.495 7 O -0.571 6.571 8 C 0.087 3.913 9 H 0.095 0.905 10 C -0.130 4.130 11 C 0.049 3.951 12 H 0.110 0.890 13 C 0.063 3.937 14 H 0.105 0.895 15 C -0.130 4.130 16 C 0.046 3.954 17 N -0.523 5.523 18 C 0.080 3.920 19 H 0.066 0.934 20 C -0.175 4.175 21 C -0.092 4.092 22 C 0.042 3.958 23 C -0.534 4.534 24 H 0.051 0.949 25 C 0.009 3.991 26 N -0.926 5.926 27 Si 0.947 3.053 28 H -0.270 1.270 29 H -0.288 1.288 30 H -0.270 1.270 31 O -0.361 6.361 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.411 0.589 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.047 0.953 50 H 0.053 0.947 51 H 0.014 0.986 52 H -0.026 1.026 53 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.801 -1.322 10.696 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C -0.026 4.026 4 C -0.002 4.002 5 N -0.369 5.369 6 C 0.292 3.708 7 O -0.450 6.450 8 C 0.026 3.974 9 H 0.113 0.887 10 C -0.169 4.169 11 C -0.060 4.060 12 H 0.127 0.873 13 C 0.006 3.994 14 H 0.122 0.878 15 C -0.168 4.168 16 C -0.081 4.081 17 N -0.246 5.246 18 C -0.028 4.028 19 H 0.084 0.916 20 C -0.233 4.233 21 C -0.130 4.130 22 C 0.005 3.995 23 C -0.573 4.573 24 H 0.070 0.930 25 C -0.189 4.189 26 N -0.566 5.566 27 Si 0.773 3.227 28 H -0.195 1.195 29 H -0.214 1.214 30 H -0.194 1.194 31 O -0.279 6.279 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.246 0.754 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.066 0.934 50 H 0.071 0.929 51 H 0.032 0.968 52 H -0.008 1.008 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.195 -0.502 11.115 13.250 hybrid contribution -1.431 -0.415 -0.454 1.558 sum 5.764 -0.917 10.660 12.153 Atomic orbital electron populations 1.22882 0.79565 1.03550 1.00898 1.87901 1.21350 1.28459 1.95649 1.22875 0.91625 0.85250 1.02869 1.21489 0.93329 0.99037 0.86307 1.45978 1.07109 1.62486 1.21356 1.21301 0.82494 0.78114 0.88901 1.90629 1.53811 1.52713 1.47883 1.22345 0.82837 0.98438 0.93750 0.88724 1.23102 1.00662 0.91758 1.01345 1.24232 0.93542 0.99475 0.88720 0.87300 1.24312 0.94867 0.81716 0.98554 0.87785 1.22931 0.97295 1.03900 0.92674 1.22768 0.86885 1.00883 0.97572 1.63495 1.24218 1.34797 1.02136 1.21865 0.94881 0.89131 0.96926 0.91599 1.22421 1.00144 0.98397 1.02363 1.21541 0.93089 0.98296 1.00052 1.18827 0.92429 0.94384 0.93813 1.21721 0.93515 1.01453 1.40564 0.93038 1.25748 1.02874 0.95025 0.95232 1.70109 1.34134 1.08222 1.44185 0.85732 0.80613 0.78357 0.78048 1.19507 1.21421 1.19446 1.88303 1.18401 1.26783 1.94459 0.91900 0.94021 0.89427 0.88871 0.91950 0.91466 0.89216 0.75378 0.88844 0.90311 0.87885 0.89838 0.92188 0.90981 0.91892 0.91657 0.91247 0.93418 0.92852 0.96774 1.00762 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -10.46 10.65 -148.98 -1.59 -12.05 16 3 C 0.05 1.01 6.07 71.98 0.44 1.45 16 4 C 0.12 2.92 6.06 86.38 0.52 3.45 16 5 N -0.72 -20.95 5.48 -463.06 -2.54 -23.48 16 6 C 0.51 17.29 7.04 87.66 0.62 17.91 16 7 O -0.57 -22.80 16.53 15.69 0.26 -22.54 16 8 C 0.09 2.95 3.75 30.31 0.11 3.06 16 9 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 10 C -0.13 -4.13 5.62 31.79 0.18 -3.95 16 11 C 0.05 1.35 2.42 46.83 0.11 1.47 16 12 H 0.11 2.67 5.57 -2.39 -0.01 2.66 16 13 C 0.06 1.68 4.72 32.57 0.15 1.84 16 14 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 15 C -0.13 -2.81 6.57 31.69 0.21 -2.60 16 16 C 0.05 1.19 6.06 86.63 0.52 1.71 16 17 N -0.52 -15.96 4.00 -828.31 -3.32 -19.27 16 18 C 0.08 2.48 2.13 44.92 0.10 2.57 16 19 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 20 C -0.17 -3.96 8.54 71.98 0.61 -3.34 16 21 C -0.09 -3.50 4.16 30.60 0.13 -3.37 16 22 C 0.04 2.11 4.44 29.85 0.13 2.25 16 23 C -0.53 -29.05 9.11 25.60 0.23 -28.82 16 24 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 25 C 0.01 0.50 5.46 84.65 0.46 0.96 16 26 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 27 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 28 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 29 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 30 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 31 O -0.36 -12.28 9.96 -130.25 -1.30 -13.57 16 32 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.41 12.12 8.47 -92.70 -0.79 11.34 16 40 H 0.09 3.53 5.24 -2.39 -0.01 3.51 16 41 H 0.08 2.34 7.86 -2.39 -0.02 2.32 16 42 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 1.61 6.54 -2.39 -0.02 1.59 16 46 H 0.06 1.35 6.19 -2.39 -0.01 1.33 16 47 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.07 1.33 6.60 -2.39 -0.02 1.31 16 49 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.05 1.96 6.29 -2.39 -0.02 1.95 16 51 H 0.01 0.74 6.40 -2.38 -0.02 0.73 16 52 H -0.03 -1.47 8.14 -2.39 -0.02 -1.49 16 53 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -70.12 409.37 -0.27 -70.39 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.11 Total: 33.33 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.78 Total: -3.63 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -5.57 Total: -96.82 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -2.62 Total: -48.16 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -70.12 -0.27 -70.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495601.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.069 kcal (2) G-P(sol) polarization free energy of solvation -70.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds