Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21286 * 119.99990 * 2 1 4 4 N 1.34773 * 120.00268 * 179.97438 * 2 1 3 5 5 C 1.47133 * 120.88596 * 0.02562 * 4 2 1 6 6 C 1.53318 * 108.27675 * 130.01353 * 5 4 2 7 7 O 1.42862 * 109.15028 * 52.02969 * 6 5 4 8 8 C 1.43881 * 113.82740 * 296.07725 * 7 6 5 9 9 C 1.47019 * 120.89095 * 180.02562 * 4 2 1 10 10 C 1.46592 * 111.37485 * 301.73623 * 8 7 6 11 11 O 1.44202 * 111.80653 * 299.76692 * 10 8 7 12 12 C 1.40036 * 112.81473 * 279.48999 * 11 10 8 13 13 C 1.54146 * 112.79005 * 94.77331 * 12 11 10 14 14 N 1.48735 * 111.88974 * 319.05944 * 13 12 11 15 15 C 1.46901 * 110.99841 * 192.16011 * 14 13 12 16 16 H 1.08995 * 109.47446 * 182.70535 * 15 14 13 17 17 C 1.53003 * 109.46977 * 302.70374 * 15 14 13 18 18 C 1.52998 * 109.47211 * 62.70371 * 15 14 13 19 19 C 1.53007 * 109.47248 * 174.07855 * 18 15 14 20 20 C 1.50702 * 109.47136 * 185.16785 * 19 18 15 21 21 H 1.08000 * 119.99869 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99847 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99935 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00008 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46880 * 89.99802 * 24 22 20 26 26 H 1.48501 * 109.47304 * 209.99755 * 24 22 20 27 27 H 1.48502 * 109.47225 * 330.00063 * 24 22 20 28 28 C 1.43782 * 114.39305 * 318.70755 * 14 13 12 29 29 H 1.09004 * 109.46961 * 240.00073 * 1 2 3 30 30 H 1.09000 * 109.46871 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.47183 * 120.00429 * 1 2 3 32 32 H 1.09004 * 109.70410 * 10.31835 * 5 4 2 33 33 H 1.08994 * 109.70688 * 249.71046 * 5 4 2 34 34 H 1.09003 * 109.52602 * 292.12384 * 6 5 4 35 35 H 1.08997 * 109.57874 * 171.96402 * 6 5 4 36 36 H 1.09003 * 109.68861 * 350.89696 * 9 4 2 37 37 H 1.08997 * 109.69377 * 111.43241 * 9 4 2 38 38 H 1.08998 * 109.01630 * 60.36768 * 10 8 7 39 39 H 1.09001 * 109.01754 * 179.16947 * 10 8 7 40 40 H 1.09002 * 108.82089 * 215.61933 * 12 11 10 41 41 H 1.08996 * 108.82313 * 334.02547 * 12 11 10 42 42 H 1.09000 * 108.99790 * 79.68096 * 13 12 11 43 43 H 1.08996 * 108.99639 * 198.43830 * 13 12 11 44 44 H 1.08998 * 109.46990 * 299.99802 * 17 15 14 45 45 H 1.08997 * 109.46917 * 60.00373 * 17 15 14 46 46 H 1.09004 * 109.46954 * 180.02562 * 17 15 14 47 47 H 1.09004 * 109.47077 * 294.07489 * 18 15 14 48 48 H 1.08998 * 109.46986 * 54.08007 * 18 15 14 49 49 H 1.08996 * 109.46962 * 305.17000 * 19 18 15 50 50 H 1.09002 * 109.46847 * 65.16325 * 19 18 15 51 51 H 0.97000 * 119.99844 * 179.97438 * 23 22 20 52 52 H 1.09005 * 109.57873 * 333.60547 * 28 14 13 53 53 H 1.08997 * 109.58807 * 213.19791 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4651 -2.4526 0.0005 6 6 2.0494 -3.3283 -1.1141 7 8 3.4696 -3.3849 -0.9697 8 6 4.1220 -2.1135 -1.1371 9 6 3.6509 -1.1899 0.0011 10 6 3.8352 -1.5350 -2.4532 11 8 4.2886 -2.3882 -3.5237 12 6 5.6611 -2.2640 -3.7728 13 6 6.5006 -3.3233 -3.0317 14 7 6.0111 -3.5483 -1.6454 15 6 6.9788 -4.3320 -0.8661 16 1 6.5751 -4.5231 0.1282 17 6 7.2445 -5.6627 -1.5729 18 6 8.2878 -3.5495 -0.7433 19 6 9.2432 -4.2967 0.1895 20 6 10.4809 -3.4661 0.4113 21 1 10.5767 -2.5019 -0.0657 22 6 11.4913 -3.9375 1.2222 23 7 11.3747 -5.1119 1.8027 24 14 13.0258 -2.9083 1.4966 25 1 12.8272 -2.0283 2.6762 26 1 14.1860 -3.8036 1.7366 27 1 13.2840 -2.0746 0.2951 28 6 5.6367 -2.3493 -0.9458 29 1 -0.3633 -0.5138 0.8900 30 1 -0.3633 1.0277 0.0005 31 1 -0.3633 -0.5139 -0.8899 32 1 0.4043 -2.2825 -0.1837 33 1 1.5968 -2.9466 0.9631 34 1 1.7986 -2.8989 -2.0841 35 1 1.6357 -4.3342 -1.0431 36 1 4.0339 -0.1824 -0.1614 37 1 4.0120 -1.5703 0.9566 38 1 2.7597 -1.3862 -2.5490 39 1 4.3344 -0.5693 -2.5331 40 1 5.8345 -2.3646 -4.8442 41 1 5.9879 -1.2737 -3.4556 42 1 6.4523 -4.2629 -3.5820 43 1 7.5376 -2.9899 -2.9920 44 1 6.3120 -6.2202 -1.6604 45 1 7.6483 -5.4717 -2.5671 46 1 7.9623 -6.2445 -0.9944 47 1 8.7452 -3.4497 -1.7277 48 1 8.0825 -2.5596 -0.3359 49 1 8.7508 -4.4774 1.1450 50 1 9.5208 -5.2493 -0.2619 51 1 12.0858 -5.4437 2.3729 52 1 6.1921 -1.5025 -1.3492 53 1 5.8578 -2.4613 0.1156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498555.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -127.172046 kcal Electronic energy + Delta-G solvation = -32437.055505 eV Core-core repulsion = 28308.578653 eV Total energy + Delta-G solvation = -4128.476852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.05771 -40.55196 -39.08351 -38.30572 -35.80183 -35.52406 -34.36533 -33.27206 -31.05672 -30.74918 -30.17929 -28.98359 -27.35060 -26.98910 -25.98219 -24.27354 -23.83591 -22.69877 -21.39630 -20.27514 -19.99076 -18.59922 -18.40418 -18.13816 -17.64097 -17.09476 -16.79462 -16.62829 -16.51081 -16.11521 -15.91717 -15.64862 -15.59031 -14.97104 -14.94992 -14.59522 -14.54355 -14.30738 -14.17112 -14.07168 -13.69407 -13.48792 -13.35453 -13.11733 -13.03374 -12.90557 -12.74233 -12.62156 -12.54545 -12.47095 -12.27610 -12.13531 -11.98364 -11.66650 -11.53594 -11.41209 -11.33940 -11.20169 -11.17017 -10.85809 -10.57270 -10.51296 -9.53440 -8.93890 -8.20487 -6.32331 1.36844 1.37700 1.48658 1.54018 1.83555 2.38298 2.51301 2.94067 3.02374 3.11345 3.48178 3.59621 3.73484 3.82564 3.97227 4.01101 4.05946 4.15830 4.22142 4.25222 4.29172 4.30211 4.31532 4.41266 4.48929 4.49252 4.56861 4.61009 4.64248 4.69193 4.72361 4.76407 4.78371 4.88574 4.90026 4.97928 5.00970 5.07113 5.09777 5.23173 5.29118 5.30236 5.34152 5.50117 5.73893 5.84420 6.03147 6.17277 6.26661 6.31476 6.36137 6.47596 6.84622 7.06387 7.36628 8.89948 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.002869 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.691639 B = 9755.664811 C =10469.481007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.504 3.496 3 O -0.599 6.599 4 N -0.614 5.614 5 C 0.073 3.927 6 C 0.032 3.968 7 O -0.351 6.351 8 C 0.094 3.906 9 C 0.091 3.909 10 C 0.049 3.951 11 O -0.360 6.360 12 C 0.059 3.941 13 C 0.025 3.975 14 N -0.521 5.521 15 C 0.099 3.901 16 H 0.064 0.936 17 C -0.130 4.130 18 C -0.122 4.122 19 C 0.034 3.966 20 C -0.544 4.544 21 H 0.054 0.946 22 C 0.002 3.998 23 N -0.931 5.931 24 Si 0.960 3.040 25 H -0.273 1.273 26 H -0.280 1.280 27 H -0.265 1.265 28 C 0.074 3.926 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.045 0.955 47 H 0.050 0.950 48 H 0.041 0.959 49 H -0.013 1.013 50 H -0.001 1.001 51 H 0.264 0.736 52 H 0.050 0.950 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.828 5.730 -8.885 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.295 3.705 3 O -0.480 6.480 4 N -0.348 5.348 5 C -0.049 4.049 6 C -0.045 4.045 7 O -0.270 6.270 8 C 0.052 3.948 9 C -0.033 4.033 10 C -0.028 4.028 11 O -0.277 6.277 12 C -0.018 4.018 13 C -0.102 4.102 14 N -0.244 5.244 15 C -0.009 4.009 16 H 0.082 0.918 17 C -0.188 4.188 18 C -0.161 4.161 19 C -0.004 4.004 20 C -0.582 4.582 21 H 0.072 0.928 22 C -0.196 4.196 23 N -0.571 5.571 24 Si 0.785 3.215 25 H -0.199 1.199 26 H -0.206 1.206 27 H -0.189 1.189 28 C -0.056 4.056 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.127 0.873 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.061 0.939 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.005 0.995 50 H 0.018 0.982 51 H 0.072 0.928 52 H 0.068 0.932 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.885 5.602 -8.898 27.939 hybrid contribution 2.170 1.069 0.855 2.566 sum -23.715 6.671 -8.044 25.915 Atomic orbital electron populations 1.21981 0.87617 1.06286 1.06543 1.21767 0.92553 0.82035 0.74106 1.90709 1.72132 1.32770 1.52375 1.48300 1.06106 1.07312 1.73067 1.22763 0.98699 0.82533 1.00879 1.23177 0.81976 1.02090 0.97292 1.88485 1.18696 1.27817 1.91952 1.21672 0.93480 0.85565 0.94065 1.22244 0.81320 1.00921 0.98854 1.21962 1.01388 0.92623 0.86821 1.87757 1.23024 1.65541 1.51370 1.22517 0.81580 0.97012 1.00740 1.23328 0.96961 1.00874 0.89033 1.60476 1.42174 1.20089 1.01663 1.21633 0.89279 0.93661 0.96331 0.91765 1.21726 1.01160 0.95903 1.00005 1.22086 0.96441 0.98513 0.99095 1.18913 0.93174 0.94920 0.93385 1.21698 1.03658 1.04184 1.28643 0.92818 1.25930 1.01954 0.96245 0.95494 1.70087 1.34764 1.19868 1.32358 0.85521 0.78625 0.78558 0.78797 1.19882 1.20556 1.18933 1.21741 0.92389 0.92316 0.99111 0.86877 0.89166 0.86616 0.85031 0.89945 0.92467 0.86028 0.89637 0.90556 0.88404 0.91898 0.87322 0.93182 0.90056 0.93857 0.91524 0.92422 0.93640 0.93115 0.94044 0.99471 0.98243 0.92764 0.93217 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 8.69 71.24 0.62 -0.71 16 2 C 0.50 9.57 7.82 87.66 0.69 10.26 16 3 O -0.60 -17.51 16.54 -3.05 -0.05 -17.57 16 4 N -0.61 -10.76 2.62 -816.39 -2.14 -12.90 16 5 C 0.07 0.79 6.55 86.37 0.57 1.35 16 6 C 0.03 0.47 6.62 72.09 0.48 0.95 16 7 O -0.35 -8.45 9.48 -143.10 -1.36 -9.81 16 8 C 0.09 2.19 0.64 -11.95 -0.01 2.18 16 9 C 0.09 2.04 5.26 86.61 0.46 2.50 16 10 C 0.05 1.06 4.58 70.00 0.32 1.38 16 11 O -0.36 -8.71 10.44 -135.17 -1.41 -10.12 16 12 C 0.06 1.31 6.09 72.37 0.44 1.75 16 13 C 0.03 0.67 4.91 86.34 0.42 1.09 16 14 N -0.52 -15.49 3.53 -868.60 -3.06 -18.56 16 15 C 0.10 3.47 2.22 44.92 0.10 3.57 16 16 H 0.06 2.44 7.91 -2.39 -0.02 2.42 16 17 C -0.13 -4.34 8.67 71.98 0.62 -3.71 16 18 C -0.12 -5.06 4.07 30.60 0.12 -4.93 16 19 C 0.03 1.79 4.62 29.85 0.14 1.92 16 20 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 21 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 22 C 0.00 0.10 5.46 84.65 0.46 0.56 16 23 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 24 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 C 0.07 2.08 3.36 87.39 0.29 2.37 16 29 H 0.11 0.40 8.02 -2.38 -0.02 0.39 16 30 H 0.09 0.83 8.12 -2.39 -0.02 0.81 16 31 H 0.12 0.33 7.64 -2.39 -0.02 0.31 16 32 H 0.13 0.40 6.05 -2.38 -0.01 0.39 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.83 6.35 -2.39 -0.02 0.82 16 35 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.09 2.16 7.06 -2.39 -0.02 2.14 16 37 H 0.08 1.81 7.82 -2.39 -0.02 1.79 16 38 H 0.10 1.93 6.18 -2.39 -0.01 1.91 16 39 H 0.06 1.34 7.43 -2.39 -0.02 1.32 16 40 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 1.05 6.57 -2.39 -0.02 1.03 16 42 H 0.08 2.12 6.96 -2.39 -0.02 2.11 16 43 H 0.04 1.23 5.96 -2.39 -0.01 1.21 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.06 1.79 6.62 -2.39 -0.02 1.77 16 46 H 0.04 1.69 6.71 -2.38 -0.02 1.68 16 47 H 0.05 2.06 6.51 -2.38 -0.02 2.05 16 48 H 0.04 1.72 7.10 -2.39 -0.02 1.70 16 49 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 50 H 0.00 -0.04 6.85 -2.39 -0.02 -0.06 16 51 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 52 H 0.05 1.36 6.91 -2.38 -0.02 1.35 16 53 H 0.07 2.10 6.88 -2.39 -0.02 2.09 16 Total: -1.00 -75.55 391.81 1.14 -74.41 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.90 Total: 15.12 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 5.95 Total: -10.65 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -4.92 Total: -88.29 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -2.82 Total: -37.49 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -75.55 1.14 -74.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498555.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.765 kcal (2) G-P(sol) polarization free energy of solvation -75.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds