Wall clock time and date at job start Sat Apr 11 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00276 * 2 1 4 4 C 1.52995 * 109.47165 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47541 * 305.00140 * 4 3 2 6 6 C 1.52999 * 109.47220 * 65.00350 * 4 3 2 7 7 C 1.50703 * 109.47224 * 185.00092 * 4 3 2 8 8 O 1.21282 * 119.99999 * 328.34240 * 7 4 3 9 9 N 1.34772 * 120.00239 * 148.33555 * 7 4 3 10 10 C 1.48192 * 127.80102 * 175.13026 * 9 7 4 11 11 C 1.54519 * 104.63546 * 140.72914 * 10 9 7 12 12 H 1.09007 * 110.37789 * 264.95848 * 11 10 9 13 13 C 1.52998 * 110.47227 * 142.65431 * 11 10 9 14 14 N 1.46494 * 109.46869 * 69.58650 * 13 11 10 15 15 C 1.36941 * 119.99726 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99899 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99878 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99444 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99967 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47157 * 90.00332 * 19 17 15 21 21 H 1.48508 * 109.47150 * 209.99866 * 19 17 15 22 22 H 1.48494 * 109.47369 * 330.00015 * 19 17 15 23 23 C 1.53782 * 104.78104 * 23.77721 * 11 10 9 24 24 C 1.48263 * 127.80161 * 355.14047 * 9 7 4 25 25 C 1.52648 * 110.25840 * 240.97872 * 23 11 10 26 26 C 1.53207 * 109.16748 * 182.30703 * 25 23 11 27 27 O 1.42917 * 109.35880 * 56.67127 * 26 25 23 28 28 C 1.42907 * 114.21357 * 298.36672 * 27 26 25 29 29 C 1.52585 * 110.27627 * 118.80513 * 23 11 10 30 30 H 1.08993 * 109.47309 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47074 * 300.00042 * 1 2 3 32 32 H 1.09000 * 109.46740 * 59.99900 * 1 2 3 33 33 H 1.09007 * 109.46797 * 59.99877 * 3 2 1 34 34 H 1.08997 * 109.47261 * 300.00300 * 3 2 1 35 35 H 1.08997 * 109.47502 * 184.68384 * 6 4 3 36 36 H 1.08999 * 109.47302 * 304.68571 * 6 4 3 37 37 H 1.09004 * 109.47203 * 64.68298 * 6 4 3 38 38 H 1.08997 * 110.39924 * 21.94303 * 10 9 7 39 39 H 1.08993 * 110.50677 * 259.56746 * 10 9 7 40 40 H 1.09002 * 109.46690 * 189.58865 * 13 11 10 41 41 H 1.08993 * 109.47020 * 309.58414 * 13 11 10 42 42 H 0.96995 * 120.00618 * 359.97438 * 14 13 11 43 43 H 0.97000 * 119.99492 * 179.97438 * 18 17 15 44 44 H 1.08992 * 110.43264 * 100.36670 * 24 9 7 45 45 H 1.09011 * 110.42252 * 337.88027 * 24 9 7 46 46 H 1.09007 * 109.55344 * 62.38711 * 25 23 11 47 47 H 1.08995 * 109.51231 * 302.19913 * 25 23 11 48 48 H 1.09004 * 109.48914 * 296.69572 * 26 25 23 49 49 H 1.08993 * 109.49409 * 176.64654 * 26 25 23 50 50 H 1.09003 * 109.49012 * 181.57323 * 28 27 26 51 51 H 1.09001 * 109.49506 * 301.62599 * 28 27 26 52 52 H 1.09000 * 109.51882 * 57.77689 * 29 23 11 53 53 H 1.08997 * 109.51939 * 297.60043 * 29 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.8508 0.5684 0.8427 6 6 3.9962 0.5364 -1.3064 7 6 4.1480 2.5559 0.1245 8 8 3.5817 3.5181 -0.3492 9 7 5.3251 2.7131 0.7618 10 6 6.1259 3.9526 0.8977 11 6 6.6701 3.9093 2.3433 12 1 6.0198 4.4748 3.0108 13 6 8.0957 4.4624 2.3951 14 7 8.0685 5.9062 2.1488 15 6 9.2357 6.6224 2.1463 16 1 10.1761 6.1229 2.3263 17 6 9.2100 7.9904 1.9123 18 7 10.3318 8.6788 1.9104 19 14 7.5834 8.8542 1.6001 20 1 7.0122 9.3155 2.8909 21 1 7.8062 10.0231 0.7116 22 1 6.6388 7.9110 0.9497 23 6 6.6599 2.4188 2.7218 24 6 6.1113 1.6851 1.4851 25 6 5.7453 2.1844 3.9213 26 6 5.7983 0.7041 4.3126 27 8 7.1524 0.3330 4.5799 28 6 8.0300 0.4721 3.4607 29 6 8.0759 1.9421 3.0314 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 5.0735 0.3742 -1.2716 36 1 3.4890 -0.4196 -1.4366 37 1 3.7545 1.1927 -2.1425 38 1 5.4951 4.8300 0.7553 39 1 6.9480 3.9564 0.1822 40 1 8.5246 4.2695 3.3785 41 1 8.7025 3.9749 1.6322 42 1 7.2239 6.3548 1.9867 43 1 10.3139 9.6347 1.7465 44 1 6.9299 1.3243 0.8625 45 1 5.4689 0.8579 1.7874 46 1 4.7226 2.4553 3.6588 47 1 6.0807 2.7949 4.7597 48 1 5.4095 0.0976 3.4947 49 1 5.1938 0.5419 5.2049 50 1 9.0310 0.1436 3.7405 51 1 7.6649 -0.1374 2.6341 52 1 8.4946 2.5441 3.8379 53 1 8.6967 2.0422 2.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186300037.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:59 Heat of formation + Delta-G solvation = -111.132760 kcal Electronic energy + Delta-G solvation = -31996.646927 eV Core-core repulsion = 27868.865591 eV Total energy + Delta-G solvation = -4127.781337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.16946 -39.59503 -38.14162 -37.39583 -34.93615 -33.92300 -33.33899 -31.82265 -31.28992 -29.78584 -27.74981 -27.08795 -26.36236 -25.81760 -24.56824 -23.77924 -22.80114 -21.86845 -20.61057 -19.35219 -18.63009 -17.90716 -17.35810 -16.54912 -16.31067 -16.17974 -16.08479 -15.87978 -15.53679 -15.09274 -14.99012 -14.73784 -14.52880 -14.26206 -14.00345 -13.72768 -13.48277 -13.03404 -12.89692 -12.68485 -12.63704 -12.46585 -12.44347 -12.25082 -12.09932 -11.86551 -11.77007 -11.57818 -11.47843 -11.21907 -11.19250 -11.16128 -10.88497 -10.69057 -10.33511 -10.24096 -10.06403 -10.03651 -9.82211 -9.61291 -9.51803 -8.91345 -8.80702 -7.25907 -5.78921 -3.14893 2.44561 2.66414 3.37640 3.41268 3.45827 3.51265 3.73483 4.21076 4.25792 4.40192 4.42595 4.58119 4.61646 4.68782 4.81444 4.85661 4.92079 4.96051 4.99538 5.01803 5.08720 5.15214 5.24255 5.26449 5.28081 5.30185 5.35278 5.37357 5.48652 5.50370 5.52010 5.53337 5.57167 5.59307 5.67951 5.78165 5.82736 5.88922 5.91846 5.97690 6.02841 6.11838 6.16057 6.28256 6.60101 6.65538 6.75439 7.04840 7.43053 7.96038 8.00765 8.39850 9.18385 9.91023 10.09806 11.39323 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.003568 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.937336 B = 7846.545980 C = 9800.997290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.078 3.922 4 C -0.104 4.104 5 H 0.096 0.904 6 C -0.136 4.136 7 C 0.540 3.460 8 O -0.540 6.540 9 N -0.618 5.618 10 C 0.111 3.889 11 C -0.102 4.102 12 H 0.083 0.917 13 C 0.167 3.833 14 N -0.757 5.757 15 C -0.245 4.245 16 H 0.090 0.910 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.882 3.118 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.063 4.063 24 C 0.105 3.895 25 C -0.141 4.141 26 C 0.061 3.939 27 O -0.382 6.382 28 C 0.059 3.941 29 C -0.147 4.147 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.031 0.969 42 H 0.360 0.640 43 H 0.260 0.740 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.048 0.952 49 H 0.092 0.908 50 H 0.095 0.905 51 H 0.048 0.952 52 H 0.089 0.911 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 -23.132 -0.493 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C 0.001 3.999 4 C -0.125 4.125 5 H 0.114 0.886 6 C -0.194 4.194 7 C 0.328 3.672 8 O -0.417 6.417 9 N -0.351 5.351 10 C -0.011 4.011 11 C -0.121 4.121 12 H 0.102 0.898 13 C 0.040 3.960 14 N -0.402 5.402 15 C -0.375 4.375 16 H 0.108 0.892 17 C -0.190 4.190 18 N -0.581 5.581 19 Si 0.712 3.288 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.065 4.065 24 C -0.018 4.018 25 C -0.179 4.179 26 C -0.016 4.016 27 O -0.301 6.301 28 C -0.018 4.018 29 C -0.185 4.185 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.193 0.807 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.099 0.901 48 H 0.066 0.934 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.066 0.934 52 H 0.107 0.893 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.206 -22.794 -0.628 27.407 hybrid contribution -1.351 1.231 -0.478 1.889 sum -16.557 -21.563 -1.106 27.209 Atomic orbital electron populations 1.22738 0.80643 1.02741 1.00236 1.87798 1.19938 1.27729 1.95541 1.22251 0.91542 0.84437 1.01645 1.21146 0.95042 0.94471 1.01889 0.88569 1.21662 1.01472 1.01394 0.94866 1.19962 0.79376 0.90434 0.77392 1.90730 1.60918 1.41806 1.48269 1.49033 1.20499 1.12451 1.53165 1.22523 0.94531 0.87203 0.96795 1.22367 0.99522 0.94307 0.95953 0.89838 1.20824 0.91482 0.84991 0.98731 1.42760 1.06288 1.03383 1.87806 1.19021 0.86593 0.90456 1.41396 0.89177 1.24665 0.96331 0.96259 1.01729 1.69701 1.24856 1.07300 1.56234 0.86584 0.84571 0.79596 0.78006 1.21078 1.21680 1.20261 1.21070 0.95795 0.95415 0.94183 1.22656 0.95268 0.91241 0.92638 1.22192 0.99903 0.97670 0.98129 1.22638 0.83864 0.94038 1.01078 1.87932 1.18876 1.86918 1.36325 1.22693 0.94520 0.95578 0.88997 1.22339 0.95677 0.96791 1.03668 0.89495 0.93993 0.93920 0.92928 0.91824 0.92061 0.90492 0.91936 0.89957 0.90104 0.94567 0.95138 0.80716 0.93033 0.90428 0.90227 0.90964 0.90143 0.93384 0.88945 0.88675 0.93417 0.89259 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.75 10.16 -35.23 -0.36 -4.11 16 3 C 0.08 0.80 4.85 37.15 0.18 0.98 16 4 C -0.10 -1.05 2.68 -91.77 -0.25 -1.29 16 5 H 0.10 0.83 6.41 -51.93 -0.33 0.49 16 6 C -0.14 -1.22 9.12 37.16 0.34 -0.88 16 7 C 0.54 7.25 6.95 -10.99 -0.08 7.17 16 8 O -0.54 -9.38 16.56 5.56 0.09 -9.29 16 9 N -0.62 -7.77 3.32 -169.39 -0.56 -8.33 16 10 C 0.11 1.66 6.45 -2.31 -0.01 1.65 16 11 C -0.10 -1.44 2.73 -89.42 -0.24 -1.68 16 12 H 0.08 1.25 7.70 -51.93 -0.40 0.85 16 13 C 0.17 2.93 4.41 -4.05 -0.02 2.91 16 14 N -0.76 -17.35 5.29 -59.91 -0.32 -17.67 16 15 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 16 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 17 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 18 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 19 Si 0.88 22.30 27.73 -169.99 -4.71 17.58 16 20 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 23 C -0.06 -0.68 0.69 -154.02 -0.11 -0.78 16 24 C 0.10 1.01 4.94 -2.60 -0.01 1.00 16 25 C -0.14 -1.41 4.68 -26.80 -0.13 -1.53 16 26 C 0.06 0.53 6.64 37.26 0.25 0.78 16 27 O -0.38 -4.08 10.75 -35.23 -0.38 -4.46 16 28 C 0.06 0.53 6.65 37.27 0.25 0.77 16 29 C -0.15 -1.52 3.62 -26.84 -0.10 -1.61 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.69 8.02 -51.93 -0.42 0.28 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.41 7.85 -51.93 -0.41 1.00 16 39 H 0.08 1.26 7.76 -51.93 -0.40 0.85 16 40 H 0.04 0.65 6.42 -51.93 -0.33 0.32 16 41 H 0.03 0.54 6.99 -51.93 -0.36 0.17 16 42 H 0.36 8.24 5.48 -40.82 -0.22 8.02 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.08 0.68 7.77 -51.93 -0.40 0.28 16 45 H 0.08 0.63 4.56 -51.92 -0.24 0.40 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.05 0.36 6.52 -51.93 -0.34 0.02 16 49 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.05 0.36 7.55 -51.93 -0.39 -0.04 16 52 H 0.09 1.06 6.51 -51.93 -0.34 0.72 16 53 H 0.08 0.86 6.97 -51.93 -0.36 0.50 16 LS Contribution 401.90 15.07 6.06 6.06 Total: -1.00 -33.92 401.90 -7.64 -41.56 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -9.17 Total: 5.18 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 0.93 Total: 1.94 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.10 Total: -54.46 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.64 Total: -17.86 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.92 -7.64 -41.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186300037.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.572 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds