Wall clock time and date at job start Sat Apr 11 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99430 * 2 1 4 4 H 1.08989 * 109.47444 * 30.00770 * 3 2 1 5 5 C 1.52999 * 109.47267 * 269.99956 * 3 2 1 6 6 C 1.53006 * 109.46632 * 150.00655 * 3 2 1 7 7 C 1.50697 * 109.46956 * 294.99604 * 6 3 2 8 8 O 1.21285 * 120.00176 * 0.02562 * 7 6 3 9 9 N 1.34776 * 120.00187 * 180.02562 * 7 6 3 10 10 C 1.48190 * 127.79726 * 0.02562 * 9 7 6 11 11 C 1.54525 * 104.62959 * 219.27808 * 10 9 7 12 12 H 1.09002 * 110.37668 * 95.03612 * 11 10 9 13 13 C 1.52994 * 110.37531 * 217.26960 * 11 10 9 14 14 N 1.46500 * 109.47370 * 293.54561 * 13 11 10 15 15 C 1.36940 * 120.00124 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99999 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00095 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00251 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00064 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46808 * 90.00238 * 19 17 15 21 21 H 1.48502 * 109.47553 * 210.00319 * 19 17 15 22 22 H 1.48504 * 109.47284 * 330.00704 * 19 17 15 23 23 C 1.54090 * 104.81662 * 336.22195 * 11 10 9 24 24 C 1.48259 * 127.80125 * 179.97438 * 9 7 6 25 25 C 1.52587 * 110.32447 * 118.97573 * 23 11 10 26 26 C 1.53205 * 109.21360 * 177.85643 * 25 23 11 27 27 O 1.42909 * 109.32910 * 303.32655 * 26 25 23 28 28 C 1.42909 * 114.22804 * 61.61435 * 27 26 25 29 29 C 1.52588 * 110.38077 * 241.23169 * 23 11 10 30 30 H 1.09003 * 109.47175 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46956 * 299.99773 * 1 2 3 32 32 H 1.08994 * 109.47797 * 59.99734 * 1 2 3 33 33 H 1.09006 * 109.47316 * 300.00590 * 5 3 2 34 34 H 1.09001 * 109.46918 * 60.00277 * 5 3 2 35 35 H 1.08994 * 109.47469 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.46888 * 175.00246 * 6 3 2 37 37 H 1.08999 * 109.47567 * 54.99804 * 6 3 2 38 38 H 1.08998 * 110.40573 * 338.05986 * 10 9 7 39 39 H 1.08997 * 110.40801 * 100.49364 * 10 9 7 40 40 H 1.09004 * 109.47310 * 53.54710 * 13 11 10 41 41 H 1.09004 * 109.47420 * 173.54490 * 13 11 10 42 42 H 0.96996 * 119.99713 * 0.02562 * 14 13 11 43 43 H 0.97002 * 120.00345 * 179.97438 * 18 17 15 44 44 H 1.09002 * 110.42904 * 259.63243 * 24 9 7 45 45 H 1.09003 * 110.42724 * 21.99630 * 24 9 7 46 46 H 1.09004 * 109.51539 * 297.77545 * 25 23 11 47 47 H 1.09000 * 109.51523 * 57.93481 * 25 23 11 48 48 H 1.09000 * 109.49314 * 183.36672 * 26 25 23 49 49 H 1.09003 * 109.51272 * 63.29530 * 26 25 23 50 50 H 1.09001 * 109.49467 * 178.42846 * 28 27 26 51 51 H 1.09003 * 109.51475 * 58.36397 * 28 27 26 52 52 H 1.08992 * 109.51633 * 302.10604 * 29 23 11 53 53 H 1.09008 * 109.51158 * 62.20965 * 29 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7715 -1.4425 6 6 3.3589 1.2633 0.7212 7 6 3.1417 0.9237 2.1732 8 8 2.0187 0.7335 2.5901 9 7 4.1953 0.8311 3.0086 10 6 5.6286 1.0276 2.6878 11 6 6.3635 -0.0611 3.5017 12 1 6.5356 -0.9440 2.8860 13 6 7.6903 0.4796 4.0384 14 7 8.5969 0.7476 2.9192 15 6 9.8518 1.2413 3.1577 16 1 10.1733 1.4326 4.1708 17 6 10.7106 1.4957 2.0973 18 7 11.9168 1.9697 2.3264 19 14 10.1548 1.1642 0.3449 20 1 9.5103 2.3822 -0.2087 21 1 11.3305 0.8043 -0.4877 22 1 9.1814 0.0426 0.3381 23 6 5.4087 -0.3961 4.6638 24 6 4.1819 0.5107 4.4561 25 6 4.9952 -1.8637 4.6038 26 6 4.0907 -2.1819 5.7987 27 8 4.7765 -1.8592 7.0102 28 6 5.1218 -0.4784 7.1387 29 6 6.0715 -0.0853 6.0026 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.8828 1.0776 -1.9564 34 1 1.2567 1.8016 -1.9563 35 1 2.6612 2.7671 -1.4425 36 1 3.8426 2.2371 0.6443 37 1 3.9931 0.5053 0.2616 38 1 5.8022 0.8865 1.6210 39 1 5.9552 2.0199 2.9989 40 1 7.5103 1.4028 4.5893 41 1 8.1412 -0.2578 4.7026 42 1 8.3080 0.5762 2.0093 43 1 12.5171 2.1472 1.5854 44 1 4.2765 1.4210 5.0481 45 1 3.2671 -0.0202 4.7198 46 1 4.4534 -2.0517 3.6768 47 1 5.8835 -2.4941 4.6414 48 1 3.8411 -3.2430 5.7935 49 1 3.1762 -1.5927 5.7302 50 1 5.6139 -0.3142 8.0973 51 1 4.2186 0.1294 7.0846 52 1 6.9984 -0.6520 6.0903 53 1 6.2897 0.9811 6.0620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186301821.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:22 Heat of formation + Delta-G solvation = -134.651040 kcal Electronic energy + Delta-G solvation = -31988.787392 eV Core-core repulsion = 27859.986226 eV Total energy + Delta-G solvation = -4128.801166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.03792 -40.41495 -38.93553 -38.31189 -36.48407 -34.66743 -33.79934 -33.52094 -32.18383 -31.12289 -29.66706 -27.72138 -27.22491 -27.12078 -25.46928 -24.86676 -23.51772 -22.59970 -21.93421 -20.30481 -20.01941 -19.15936 -18.24515 -17.84966 -17.13951 -17.03435 -16.94154 -16.74668 -16.42102 -16.05383 -15.95927 -15.74441 -15.49949 -15.41944 -15.15356 -14.77233 -14.59649 -14.05466 -13.96576 -13.84042 -13.53218 -13.47627 -13.25513 -13.17943 -13.05758 -12.93511 -12.89586 -12.78021 -12.51815 -12.40876 -12.32460 -12.18107 -11.99367 -11.87206 -11.75715 -11.68856 -11.26543 -11.12570 -10.90081 -10.85347 -10.54345 -10.37996 -9.77413 -9.24512 -7.98423 -5.32039 1.40698 1.45063 1.52401 1.60605 1.88939 2.52497 2.86413 2.97208 3.21686 3.33283 3.36976 3.54787 3.64533 3.79763 3.86086 4.04556 4.06201 4.11759 4.15451 4.18692 4.20070 4.29334 4.37133 4.45243 4.47353 4.50481 4.56491 4.59127 4.61674 4.65329 4.68874 4.71830 4.78929 4.79613 4.84154 4.86919 4.90493 4.97078 5.00108 5.03656 5.10210 5.14132 5.20066 5.28838 5.39624 5.41776 5.80951 6.24790 6.27654 6.29070 6.50811 7.11526 7.12591 7.87723 8.06920 9.23203 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007471 B = 0.004411 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3746.913520 B = 6346.660607 C = 9536.109599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.402 6.402 3 C 0.098 3.902 4 H 0.060 0.940 5 C -0.169 4.169 6 C -0.138 4.138 7 C 0.534 3.466 8 O -0.573 6.573 9 N -0.621 5.621 10 C 0.108 3.892 11 C -0.094 4.094 12 H 0.082 0.918 13 C 0.169 3.831 14 N -0.756 5.756 15 C -0.230 4.230 16 H 0.056 0.944 17 C -0.064 4.064 18 N -0.986 5.986 19 Si 0.951 3.049 20 H -0.272 1.272 21 H -0.302 1.302 22 H -0.248 1.248 23 C -0.055 4.055 24 C 0.114 3.886 25 C -0.134 4.134 26 C 0.061 3.939 27 O -0.399 6.399 28 C 0.059 3.941 29 C -0.143 4.143 30 H 0.088 0.912 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.029 0.971 42 H 0.366 0.634 43 H 0.257 0.743 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.104 0.896 49 H 0.053 0.947 50 H 0.106 0.894 51 H 0.059 0.941 52 H 0.073 0.927 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.581 -3.307 -1.018 23.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.322 6.322 3 C 0.040 3.960 4 H 0.078 0.922 5 C -0.227 4.227 6 C -0.177 4.177 7 C 0.325 3.675 8 O -0.452 6.452 9 N -0.354 5.354 10 C -0.015 4.015 11 C -0.114 4.114 12 H 0.100 0.900 13 C 0.043 3.957 14 N -0.402 5.402 15 C -0.361 4.361 16 H 0.074 0.926 17 C -0.256 4.256 18 N -0.637 5.637 19 Si 0.778 3.222 20 H -0.198 1.198 21 H -0.229 1.229 22 H -0.173 1.173 23 C -0.057 4.057 24 C -0.009 4.009 25 C -0.172 4.172 26 C -0.015 4.015 27 O -0.318 6.318 28 C -0.018 4.018 29 C -0.181 4.181 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.146 0.854 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.199 0.801 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.122 0.878 49 H 0.071 0.929 50 H 0.124 0.876 51 H 0.077 0.923 52 H 0.091 0.909 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.974 -3.625 -0.598 24.254 hybrid contribution 0.308 0.331 -1.150 1.235 sum -23.666 -3.294 -1.747 23.958 Atomic orbital electron populations 1.22767 0.80206 1.03045 0.99981 1.87850 1.20900 1.28252 1.95149 1.21896 0.93084 0.85008 0.95992 0.92199 1.22257 1.03052 1.02485 0.94881 1.21955 0.99570 1.05957 0.90261 1.20648 0.82790 0.75738 0.88351 1.90655 1.23888 1.52122 1.78575 1.49087 1.06920 1.69317 1.10123 1.22577 0.78539 0.99322 1.01056 1.22262 0.93900 0.98588 0.96608 0.89974 1.20906 0.87699 0.97504 0.89611 1.42713 1.13241 1.79407 1.04857 1.19003 0.90196 1.33266 0.93655 0.92565 1.25505 0.95990 1.01860 1.02220 1.69890 1.08817 1.53031 1.31975 0.85464 0.77459 0.79076 0.80167 1.19770 1.22935 1.17287 1.21049 0.94122 0.95458 0.95040 1.22485 0.98175 0.98766 0.81447 1.22087 1.00876 0.94978 0.99269 1.22691 0.93612 1.01839 0.83390 1.87897 1.77451 1.26823 1.39632 1.22763 0.97837 0.81985 0.99183 1.22270 0.99477 1.03144 0.93236 0.89336 0.94782 0.92813 0.91681 0.91581 0.89873 0.85383 0.87357 0.89205 0.90064 0.94566 0.95297 0.80085 0.93462 0.90196 0.90507 0.91153 0.90981 0.87796 0.92883 0.87559 0.92274 0.90866 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.82 113.37 1.23 1.90 16 2 O -0.40 -9.58 9.58 -135.19 -1.30 -10.87 16 3 C 0.10 1.92 2.27 30.60 0.07 1.99 16 4 H 0.06 1.24 7.60 -2.39 -0.02 1.22 16 5 C -0.17 -2.41 9.53 71.98 0.69 -1.72 16 6 C -0.14 -2.67 4.39 29.85 0.13 -2.54 16 7 C 0.53 13.61 7.79 87.66 0.68 14.30 16 8 O -0.57 -18.16 15.69 10.75 0.17 -17.99 16 9 N -0.62 -14.59 3.32 -808.10 -2.68 -17.28 16 10 C 0.11 2.51 6.14 86.57 0.53 3.05 16 11 C -0.09 -2.39 2.78 -9.91 -0.03 -2.42 16 12 H 0.08 2.16 7.71 -2.39 -0.02 2.15 16 13 C 0.17 5.56 4.39 86.38 0.38 5.94 16 14 N -0.76 -31.99 5.24 -343.45 -1.80 -33.79 16 15 C -0.23 -12.44 10.47 84.03 0.88 -11.56 16 16 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 17 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 18 N -0.99 -61.75 13.97 21.65 0.30 -61.45 16 19 Si 0.95 42.88 27.73 68.60 1.90 44.78 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.25 -9.89 6.52 99.48 0.65 -9.24 16 23 C -0.06 -1.21 0.69 -51.76 -0.04 -1.24 16 24 C 0.11 2.51 5.11 86.37 0.44 2.95 16 25 C -0.13 -2.86 4.68 30.53 0.14 -2.72 16 26 C 0.06 1.22 6.64 72.05 0.48 1.70 16 27 O -0.40 -9.10 10.75 -148.98 -1.60 -10.70 16 28 C 0.06 1.12 6.65 72.05 0.48 1.60 16 29 C -0.14 -3.04 3.63 30.52 0.11 -2.93 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.03 0.69 8.09 -2.39 -0.02 0.67 16 32 H 0.05 0.77 7.87 -2.39 -0.02 0.75 16 33 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 34 H 0.07 0.85 7.87 -2.39 -0.02 0.83 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.11 1.99 7.95 -2.39 -0.02 1.97 16 38 H 0.09 1.91 7.31 -2.39 -0.02 1.90 16 39 H 0.08 1.98 7.80 -2.39 -0.02 1.96 16 40 H 0.04 1.20 6.90 -2.39 -0.02 1.18 16 41 H 0.03 1.02 6.64 -2.39 -0.02 1.00 16 42 H 0.37 14.54 5.38 -92.71 -0.50 14.05 16 43 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.08 1.64 7.78 -2.39 -0.02 1.62 16 45 H 0.08 1.81 5.92 -2.39 -0.01 1.79 16 46 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.05 1.03 6.52 -2.39 -0.02 1.02 16 50 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.06 1.00 7.55 -2.39 -0.02 0.98 16 52 H 0.07 1.78 6.62 -2.39 -0.02 1.76 16 53 H 0.09 1.79 6.89 -2.38 -0.02 1.77 16 Total: -1.00 -71.51 402.41 1.97 -69.54 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.34 Total: 32.67 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 6.64 Total: 5.09 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.18 Total: -112.52 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -2.73 Total: -39.57 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.90 Total: 44.78 kcal Total: -71.51 1.97 -69.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186301821.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.113 kcal (2) G-P(sol) polarization free energy of solvation -71.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds