Wall clock time and date at job start Sat Apr 11 2020 06:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46695 * 2 1 4 4 C 1.50697 * 109.47459 * 120.00245 * 2 1 3 5 5 H 1.08005 * 120.00381 * 120.00118 * 4 2 1 6 6 C 1.37881 * 120.00131 * 299.99978 * 4 2 1 7 7 N 1.31520 * 119.99602 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47239 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47061 * 119.99841 * 8 6 4 11 11 H 1.48499 * 109.47416 * 240.00187 * 8 6 4 12 12 N 1.46902 * 109.47188 * 240.00373 * 2 1 3 13 13 C 1.46955 * 111.00114 * 86.66726 * 12 2 1 14 14 C 1.51403 * 111.11432 * 215.59229 * 13 12 2 15 15 C 1.52396 * 114.51233 * 269.20157 * 14 13 12 16 16 H 1.09994 * 110.29585 * 192.41833 * 15 14 13 17 17 C 1.53155 * 110.52204 * 70.77534 * 15 14 13 18 18 O 1.42203 * 110.68511 * 293.79554 * 17 15 14 19 19 C 1.42203 * 117.12130 * 305.48726 * 18 17 15 20 20 C 1.53143 * 110.72200 * 54.43574 * 19 18 17 21 21 H 1.10004 * 109.83255 * 188.25303 * 20 19 18 22 22 C 1.51412 * 111.10493 * 84.56763 * 13 12 2 23 23 N 1.47510 * 107.98358 * 307.87709 * 20 19 18 24 24 C 1.34659 * 122.72428 * 237.31956 * 23 20 19 25 25 O 1.21507 * 119.99802 * 359.97438 * 24 23 20 26 26 O 1.34641 * 119.99967 * 179.97438 * 24 23 20 27 27 C 1.45201 * 116.99970 * 180.02562 * 26 24 23 28 28 C 1.52994 * 109.47304 * 59.99819 * 27 26 24 29 29 C 1.52995 * 109.47308 * 180.02562 * 27 26 24 30 30 C 1.53004 * 109.47014 * 299.99796 * 27 26 24 31 31 H 1.09000 * 109.46871 * 185.67144 * 1 2 3 32 32 H 1.08996 * 109.47005 * 305.66352 * 1 2 3 33 33 H 1.08990 * 109.47339 * 65.66482 * 1 2 3 34 34 H 0.97003 * 119.99896 * 179.97438 * 7 6 4 35 35 H 1.00897 * 110.99779 * 322.71421 * 12 2 1 36 36 H 1.11925 * 105.12323 * 330.08827 * 13 12 2 37 37 H 1.10125 * 109.05319 * 147.08206 * 14 13 12 38 38 H 1.10107 * 109.06402 * 31.32894 * 14 13 12 39 39 H 1.09386 * 109.33133 * 54.47073 * 17 15 14 40 40 H 1.09355 * 109.37248 * 173.05833 * 17 15 14 41 41 H 1.09366 * 109.50104 * 293.75043 * 19 18 17 42 42 H 1.09388 * 109.46494 * 175.03465 * 19 18 17 43 43 H 1.10096 * 109.08145 * 328.59280 * 22 13 12 44 44 H 1.10116 * 109.04884 * 212.80443 * 22 13 12 45 45 H 1.09005 * 109.47416 * 59.99892 * 28 27 26 46 46 H 1.08999 * 109.47483 * 180.02562 * 28 27 26 47 47 H 1.09003 * 109.47420 * 300.00162 * 28 27 26 48 48 H 1.09008 * 109.47360 * 59.99669 * 29 27 26 49 49 H 1.08991 * 109.47620 * 179.97438 * 29 27 26 50 50 H 1.09002 * 109.47358 * 300.00139 * 29 27 26 51 51 H 1.09005 * 109.47135 * 59.99871 * 30 27 26 52 52 H 1.08994 * 109.47414 * 180.02562 * 30 27 26 53 53 H 1.09001 * 109.47211 * 300.00576 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1466 -2.2871 3.6037 10 1 3.1468 -0.1875 4.8164 11 1 1.1663 -1.5868 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.1201 0.2322 -2.3373 14 6 1.7636 -0.4601 -3.6357 15 6 2.9460 -1.0907 -4.3614 16 1 2.6584 -1.3752 -5.3842 17 6 3.4478 -2.3221 -3.6013 18 8 3.9979 -1.9470 -2.3448 19 6 5.0255 -0.9641 -2.3544 20 6 4.5615 0.2978 -3.0874 21 1 5.4086 0.9877 -3.2159 22 6 3.4366 0.9798 -2.3178 23 7 4.0443 -0.1069 -4.4083 24 6 4.5351 0.3816 -5.5632 25 8 5.4413 1.1908 -5.5441 26 8 4.0218 -0.0267 -6.7390 27 6 4.6002 0.5414 -7.9436 28 6 6.0901 0.1990 -8.0044 29 6 3.8929 -0.0371 -9.1708 30 6 4.4265 2.0614 -7.9249 31 1 -0.3633 -1.0226 0.1016 32 1 -0.3633 0.5991 0.8349 33 1 -0.3633 0.4234 -0.9363 34 1 0.7082 1.1607 3.4845 35 1 1.4336 -1.4819 -1.4258 36 1 1.3230 0.9982 -2.1622 37 1 1.2805 0.2652 -4.3090 38 1 1.0147 -1.2413 -3.4329 39 1 2.6154 -3.0139 -3.4431 40 1 4.2111 -2.8300 -4.1972 41 1 5.9120 -1.3675 -2.8520 42 1 5.2939 -0.7072 -1.3255 43 1 3.7557 1.1196 -1.2734 44 1 3.2836 1.9880 -2.7332 45 1 6.2139 -0.8839 -8.0178 46 1 6.5244 0.6258 -8.9085 47 1 6.5937 0.6114 -7.1301 48 1 2.8315 0.2072 -9.1272 49 1 4.3268 0.3897 -10.0750 50 1 4.0162 -1.1200 -9.1844 51 1 4.9301 2.4739 -7.0505 52 1 4.8603 2.4879 -8.8293 53 1 3.3651 2.3053 -7.8814 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255053095.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:33 Heat of formation + Delta-G solvation = -127.887640 kcal Electronic energy + Delta-G solvation = -32899.921911 eV Core-core repulsion = 28771.414028 eV Total energy + Delta-G solvation = -4128.507883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.23232 -40.86706 -38.06398 -37.83339 -36.27487 -35.16620 -34.48659 -33.86493 -32.38726 -29.27913 -28.34808 -28.26969 -27.76703 -27.59376 -27.08597 -24.32174 -23.68418 -22.73820 -21.88116 -20.97074 -19.61831 -18.48724 -17.93191 -17.74977 -17.21837 -16.97435 -16.92544 -16.49408 -16.24665 -15.83083 -15.80146 -15.46198 -15.23328 -15.14776 -14.94291 -14.51437 -14.44249 -13.94729 -13.71656 -13.36311 -13.29460 -13.13857 -13.00657 -12.95752 -12.84179 -12.80117 -12.77798 -12.64872 -12.50890 -12.33887 -12.26172 -12.15676 -12.06893 -11.97676 -11.85519 -11.59191 -11.37638 -11.26757 -10.97204 -10.81028 -10.62550 -10.41323 -9.50539 -8.60642 -8.01221 -6.09514 1.01716 1.44336 1.47162 1.59108 1.73868 2.49950 2.74543 3.02616 3.27819 3.53807 3.71688 3.71907 3.77262 3.82100 3.83422 3.97004 4.00450 4.04757 4.25490 4.31731 4.42387 4.45861 4.60148 4.63174 4.63603 4.74186 4.76989 4.78265 4.79707 4.84082 4.85860 4.90190 4.91907 4.94742 4.98171 5.00219 5.05746 5.14937 5.21596 5.23584 5.30045 5.35093 5.44325 5.49077 5.56022 5.79999 5.93600 6.36449 6.40672 6.64257 6.82723 7.04061 7.15665 7.24977 7.60835 9.04519 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023778 B = 0.002910 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.298150 B = 9620.210876 C = 9806.975654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.221 3.779 3 H -0.005 1.005 4 C -0.495 4.495 5 H 0.057 0.943 6 C 0.005 3.995 7 N -0.928 5.928 8 Si 0.954 3.046 9 H -0.267 1.267 10 H -0.287 1.287 11 H -0.285 1.285 12 N -0.651 5.651 13 C 0.111 3.889 14 C -0.116 4.116 15 C 0.117 3.883 16 H 0.125 0.875 17 C 0.057 3.943 18 O -0.355 6.355 19 C 0.077 3.923 20 C 0.139 3.861 21 H 0.101 0.899 22 C -0.101 4.101 23 N -0.590 5.590 24 C 0.658 3.342 25 O -0.595 6.595 26 O -0.364 6.364 27 C 0.124 3.876 28 C -0.178 4.178 29 C -0.134 4.134 30 C -0.180 4.180 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.021 0.979 34 H 0.256 0.744 35 H 0.331 0.669 36 H -0.001 1.001 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.097 0.903 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.091 0.909 47 H 0.058 0.942 48 H 0.068 0.932 49 H 0.102 0.898 50 H 0.071 0.929 51 H 0.058 0.942 52 H 0.091 0.909 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.545 -4.036 -24.395 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.113 3.887 3 H 0.013 0.987 4 C -0.534 4.534 5 H 0.075 0.925 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.781 3.219 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.211 1.211 12 N -0.283 5.283 13 C 0.001 3.999 14 C -0.154 4.154 15 C 0.014 3.986 16 H 0.142 0.858 17 C -0.021 4.021 18 O -0.272 6.272 19 C -0.001 4.001 20 C 0.037 3.963 21 H 0.119 0.881 22 C -0.140 4.140 23 N -0.331 5.331 24 C 0.413 3.587 25 O -0.486 6.486 26 O -0.278 6.278 27 C 0.088 3.912 28 C -0.235 4.235 29 C -0.191 4.191 30 C -0.237 4.237 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.149 0.851 36 H 0.017 0.983 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.115 0.885 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.120 0.880 50 H 0.090 0.910 51 H 0.077 0.923 52 H 0.110 0.890 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.355 -3.676 -24.045 25.140 hybrid contribution -0.699 0.610 0.931 1.314 sum 5.656 -3.066 -23.114 23.992 Atomic orbital electron populations 1.22232 1.00689 0.99579 0.98782 1.18929 0.89258 0.92349 0.88208 0.98669 1.21494 1.29243 1.11891 0.90738 0.92503 1.25675 0.95830 0.95933 1.01757 1.70048 1.38775 1.24643 1.23455 0.85560 0.77898 0.78686 0.79753 1.19168 1.21320 1.21085 1.60413 1.56557 1.08952 1.02338 1.20792 0.94327 0.93700 0.91125 1.21732 0.97377 1.01029 0.95294 1.22254 0.85880 0.88699 1.01743 0.85767 1.22945 0.99155 0.94460 0.85497 1.87670 1.53888 1.57106 1.28523 1.22611 0.89392 0.87111 1.00989 1.21917 0.96715 0.97786 0.79878 0.88103 1.21466 0.95085 0.97248 1.00221 1.47316 1.37677 1.45104 1.02966 1.17882 0.80200 0.79240 0.81340 1.90870 1.33001 1.37674 1.87058 1.86291 1.61291 1.66546 1.13706 1.22427 0.94050 0.93628 0.81098 1.22457 0.94640 1.02286 1.04154 1.21870 1.01116 1.02191 0.93898 1.22471 1.02486 0.94548 1.04194 0.94915 0.92865 0.95966 0.93458 0.85085 0.98331 0.91475 0.88972 0.86297 0.93082 0.93394 0.88529 0.91763 0.93318 0.91865 0.89054 0.92254 0.91289 0.87962 0.90976 0.92329 0.88995 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.28 8.83 71.98 0.64 -6.64 16 2 C 0.22 10.85 2.16 44.17 0.10 10.95 16 3 H 0.00 -0.26 7.28 -2.39 -0.02 -0.27 16 4 C -0.49 -26.97 8.84 25.60 0.23 -26.75 16 5 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 6 C 0.01 0.28 5.30 84.65 0.45 0.73 16 7 N -0.93 -53.96 11.38 21.45 0.24 -53.72 16 8 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 10 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 N -0.65 -25.43 4.33 -474.87 -2.05 -27.48 16 13 C 0.11 3.74 1.90 43.86 0.08 3.82 16 14 C -0.12 -2.92 4.99 29.87 0.15 -2.77 16 15 C 0.12 2.65 3.36 44.65 0.15 2.80 16 16 H 0.12 2.31 7.20 -1.86 -0.01 2.30 16 17 C 0.06 1.29 6.44 72.03 0.46 1.76 16 18 O -0.35 -10.76 8.11 -148.98 -1.21 -11.96 16 19 C 0.08 2.25 6.43 72.03 0.46 2.71 16 20 C 0.14 4.12 3.34 44.65 0.15 4.27 16 21 H 0.10 3.06 7.26 -1.85 -0.01 3.05 16 22 C -0.10 -3.42 4.94 29.88 0.15 -3.27 16 23 N -0.59 -15.88 2.53 -898.55 -2.27 -18.15 16 24 C 0.66 18.44 7.82 129.81 1.01 19.46 16 25 O -0.59 -19.24 11.49 19.82 0.23 -19.01 16 26 O -0.36 -8.50 8.72 -55.51 -0.48 -8.99 16 27 C 0.12 2.27 1.13 -10.80 -0.01 2.26 16 28 C -0.18 -3.21 8.37 71.98 0.60 -2.60 16 29 C -0.13 -1.52 8.85 71.98 0.64 -0.88 16 30 C -0.18 -3.42 8.37 71.98 0.60 -2.82 16 31 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 2.86 6.24 -2.39 -0.01 2.84 16 33 H 0.02 0.92 7.41 -2.39 -0.02 0.90 16 34 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.33 12.19 7.61 -89.70 -0.68 11.51 16 36 H 0.00 -0.05 6.91 -0.79 -0.01 -0.05 16 37 H 0.07 1.61 8.24 -1.78 -0.01 1.60 16 38 H 0.09 2.05 7.54 -1.79 -0.01 2.04 16 39 H 0.12 2.25 8.17 -2.18 -0.02 2.24 16 40 H 0.05 1.05 8.17 -2.20 -0.02 1.03 16 41 H 0.05 1.27 8.17 -2.19 -0.02 1.25 16 42 H 0.10 3.03 8.17 -2.18 -0.02 3.01 16 43 H 0.06 2.52 7.56 -1.80 -0.01 2.50 16 44 H 0.05 1.63 8.23 -1.79 -0.01 1.62 16 45 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 1.45 5.88 -2.39 -0.01 1.43 16 48 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.06 1.50 5.88 -2.38 -0.01 1.48 16 52 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -65.40 395.67 2.59 -62.82 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.25 Total: 27.02 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 5.86 Total: 3.03 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -4.08 Total: -99.36 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -1.46 Total: -39.96 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -65.40 2.59 -62.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255053095.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.073 kcal (2) G-P(sol) polarization free energy of solvation -65.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds