Wall clock time and date at job start Sat Apr 11 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47239 * 2 1 4 4 C 1.53000 * 109.47453 * 239.99475 * 2 1 3 5 5 O 1.42908 * 109.46697 * 65.00000 * 4 2 1 6 6 C 1.53009 * 109.47073 * 119.99861 * 2 1 3 7 7 N 1.46899 * 109.46750 * 296.33540 * 6 2 1 8 8 C 1.44340 * 110.99633 * 170.85748 * 7 6 2 9 9 C 1.53824 * 112.18655 * 215.86244 * 8 7 6 10 10 O 1.44188 * 112.87515 * 318.44001 * 9 8 7 11 11 C 1.40377 * 117.19199 * 317.86812 * 10 9 8 12 12 C 1.54305 * 108.82727 * 92.90402 * 11 10 9 13 13 C 1.54533 * 108.40294 * 158.49789 * 12 11 10 14 14 C 1.51324 * 104.22078 * 269.90464 * 13 12 11 15 15 O 1.21283 * 124.94682 * 164.11932 * 14 13 12 16 16 N 1.34425 * 110.10991 * 344.25394 * 14 13 12 17 17 C 1.46494 * 124.35086 * 179.48276 * 16 14 13 18 18 C 1.53004 * 109.47013 * 269.69749 * 17 16 14 19 19 C 1.50702 * 109.47123 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99965 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99713 * 180.27530 * 19 18 17 22 22 N 1.31509 * 120.00098 * 359.72543 * 21 19 18 23 23 Si 1.86801 * 119.99647 * 179.72622 * 21 19 18 24 24 H 1.48497 * 109.47280 * 60.00255 * 23 21 19 25 25 H 1.48500 * 109.46870 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47443 * 299.99996 * 23 21 19 27 27 C 1.46824 * 111.29742 * 359.21177 * 16 14 13 28 28 C 1.46551 * 111.81660 * 283.16966 * 12 11 10 29 29 H 1.09003 * 109.47378 * 304.77198 * 1 2 3 30 30 H 1.09001 * 109.46938 * 64.77103 * 1 2 3 31 31 H 1.08999 * 109.46992 * 184.77052 * 1 2 3 32 32 H 1.08995 * 109.47301 * 184.99602 * 4 2 1 33 33 H 1.09000 * 109.47182 * 305.00695 * 4 2 1 34 34 H 0.96701 * 113.99833 * 180.02562 * 5 4 2 35 35 H 1.08993 * 109.47086 * 176.33492 * 6 2 1 36 36 H 1.08998 * 109.47213 * 56.33067 * 6 2 1 37 37 H 1.08994 * 108.94236 * 336.56229 * 8 7 6 38 38 H 1.09002 * 108.94065 * 95.16898 * 8 7 6 39 39 H 1.09008 * 108.80184 * 79.31207 * 9 8 7 40 40 H 1.09001 * 108.80665 * 197.67081 * 9 8 7 41 41 H 1.09005 * 109.57926 * 333.09637 * 11 10 9 42 42 H 1.09009 * 109.57716 * 212.70622 * 11 10 9 43 43 H 1.08987 * 110.49171 * 28.79005 * 13 12 11 44 44 H 1.08995 * 110.49035 * 151.45564 * 13 12 11 45 45 H 1.08992 * 109.47629 * 149.69924 * 17 16 14 46 46 H 1.08999 * 109.47277 * 29.69616 * 17 16 14 47 47 H 1.09000 * 109.46652 * 59.99959 * 18 17 16 48 48 H 1.08999 * 109.46991 * 300.00043 * 18 17 16 49 49 H 0.97001 * 119.99909 * 179.97438 * 22 21 19 50 50 H 1.08997 * 110.24459 * 136.12083 * 27 16 14 51 51 H 1.08999 * 110.24705 * 258.03068 * 27 16 14 52 52 H 1.09004 * 108.90676 * 181.45103 * 28 12 11 53 53 H 1.09000 * 108.90644 * 300.06193 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 1.6620 0.0167 -2.4130 6 6 2.0400 -0.7213 1.2493 7 7 1.6239 0.0205 2.4470 8 6 1.9001 -0.7352 3.6454 9 6 0.8200 -0.5326 4.7217 10 8 0.3891 0.8389 4.8322 11 6 1.3823 1.8296 4.7796 12 6 1.5357 2.3038 3.3193 13 6 2.1851 3.7061 3.3274 14 6 1.0111 4.6591 3.3871 15 8 1.0838 5.8333 3.6820 16 7 -0.1245 4.0140 3.0687 17 6 -1.4493 4.6385 3.0392 18 6 -2.1070 4.5046 4.4142 19 6 -3.4696 5.1475 4.3840 20 1 -3.8307 5.6054 3.4749 21 6 -4.2532 5.1557 5.5184 22 7 -3.8138 4.5977 6.6252 23 14 -5.9392 5.9593 5.4831 24 1 -6.7870 5.2867 4.4663 25 1 -6.5755 5.8336 6.8190 26 1 -5.7956 7.3960 5.1359 27 6 0.1346 2.6049 2.7481 28 6 2.2872 1.3406 2.5099 29 1 -0.3634 0.5861 0.8442 30 1 -0.3633 0.4380 -0.9297 31 1 -0.3633 -1.0241 0.0855 32 1 3.1263 -0.7995 -1.2055 33 1 1.6054 -1.7199 -1.2951 34 1 1.9526 -0.3835 -3.2440 35 1 3.1280 -0.7785 1.2171 36 1 1.6240 -1.7282 1.2829 37 1 1.9526 -1.7939 3.3918 38 1 2.8634 -0.4213 4.0475 39 1 -0.0420 -1.1529 4.4756 40 1 1.2188 -0.8526 5.6844 41 1 2.3283 1.4175 5.1311 42 1 1.0923 2.6714 5.4085 43 1 2.8226 3.8262 4.2031 44 1 2.7563 3.8673 2.4132 45 1 -2.0679 4.1431 2.2909 46 1 -1.3481 5.6938 2.7861 47 1 -1.4883 5.0000 5.1625 48 1 -2.2082 3.4493 4.6673 49 1 -4.3649 4.6038 7.4234 50 1 -0.6112 1.9669 3.2223 51 1 0.1259 2.4559 1.6683 52 1 2.3893 1.7331 1.4981 53 1 3.2802 1.2153 2.9415 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274069245.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:40 Heat of formation + Delta-G solvation = -149.619704 kcal Electronic energy + Delta-G solvation = -32320.236734 eV Core-core repulsion = 28190.786478 eV Total energy + Delta-G solvation = -4129.450256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.15736 -40.16924 -38.62930 -37.40310 -37.21826 -36.05929 -34.58749 -34.10838 -31.80347 -30.08196 -28.88920 -27.55016 -27.48872 -27.25122 -26.08408 -24.83022 -23.23196 -21.84659 -21.24585 -20.63419 -20.13254 -18.68976 -18.31162 -17.85569 -17.37660 -17.27298 -16.86523 -16.56988 -16.46503 -16.20001 -15.99576 -15.59288 -15.40912 -14.94901 -14.85631 -14.62024 -14.49269 -14.31439 -14.20150 -13.98475 -13.85942 -13.40093 -13.28212 -13.14221 -12.94073 -12.83418 -12.72664 -12.64082 -12.34629 -12.09323 -12.07619 -11.96035 -11.90276 -11.81648 -11.53258 -11.43628 -11.37980 -11.31757 -10.77290 -10.76278 -10.58532 -10.32778 -9.52832 -9.16504 -8.22031 -6.35771 1.37876 1.43092 1.50407 1.61662 2.19979 2.42236 2.56968 3.10445 3.11254 3.38504 3.41063 3.51301 3.72823 3.89493 3.97982 4.07554 4.13945 4.19309 4.29736 4.30869 4.38493 4.40647 4.50450 4.53383 4.59652 4.65516 4.66365 4.70447 4.72045 4.75258 4.78885 4.80637 4.86530 4.88099 4.91275 4.98998 5.09091 5.12412 5.20690 5.25307 5.34210 5.45249 5.48268 5.58342 5.60770 5.83371 6.11852 6.16006 6.24141 6.35829 6.60010 6.79080 6.99564 7.23276 7.33706 8.89989 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.003161 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.794611 B = 8855.699782 C = 9199.546267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 H 0.068 0.932 4 C 0.082 3.918 5 O -0.596 6.596 6 C 0.073 3.927 7 N -0.540 5.540 8 C 0.029 3.971 9 C 0.062 3.938 10 O -0.399 6.399 11 C 0.084 3.916 12 C -0.079 4.079 13 C -0.128 4.128 14 C 0.494 3.506 15 O -0.595 6.595 16 N -0.614 5.614 17 C 0.141 3.859 18 C 0.032 3.968 19 C -0.549 4.549 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.931 5.931 23 Si 0.972 3.028 24 H -0.260 1.260 25 H -0.281 1.281 26 H -0.269 1.269 27 C 0.130 3.870 28 C 0.074 3.926 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.395 0.605 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.116 0.884 44 H 0.133 0.867 45 H 0.082 0.918 46 H 0.054 0.946 47 H -0.028 1.028 48 H -0.005 1.005 49 H 0.264 0.736 50 H 0.072 0.928 51 H 0.079 0.921 52 H 0.089 0.911 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.433 -20.007 -14.342 31.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 H 0.086 0.914 4 C 0.004 3.996 5 O -0.404 6.404 6 C -0.054 4.054 7 N -0.264 5.264 8 C -0.099 4.099 9 C -0.015 4.015 10 O -0.318 6.318 11 C 0.006 3.994 12 C -0.080 4.080 13 C -0.168 4.168 14 C 0.284 3.716 15 O -0.477 6.477 16 N -0.345 5.345 17 C 0.019 3.981 18 C -0.006 4.006 19 C -0.587 4.587 20 H 0.084 0.916 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.795 3.205 24 H -0.185 1.185 25 H -0.206 1.206 26 H -0.194 1.194 27 C 0.009 3.991 28 C -0.053 4.053 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.245 0.755 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.066 0.934 43 H 0.134 0.866 44 H 0.151 0.849 45 H 0.100 0.900 46 H 0.072 0.928 47 H -0.010 1.010 48 H 0.014 0.986 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.097 0.903 52 H 0.107 0.893 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 18.380 -18.966 -13.591 29.703 hybrid contribution -0.015 0.215 0.255 0.334 sum 18.366 -18.751 -13.336 29.441 Atomic orbital electron populations 1.21604 0.95190 1.01492 1.00572 1.21169 0.96486 1.00097 0.93150 0.91422 1.22189 0.98547 0.94127 0.84760 1.86465 1.82088 1.54258 1.17636 1.22093 0.98659 0.97093 0.87520 1.60985 1.59927 1.03048 1.02461 1.22450 0.97093 0.99967 0.90425 1.23255 0.99145 0.81501 0.97581 1.87537 1.35214 1.15716 1.93304 1.22335 0.92616 0.90614 0.93801 1.20983 0.94607 0.94567 0.97881 1.22378 0.95529 0.91680 1.07198 1.21733 0.86829 0.87751 0.75314 1.90659 1.86830 1.18718 1.51481 1.48690 1.07084 1.12528 1.66216 1.21322 0.81448 0.96714 0.98573 1.19111 0.94342 0.95092 0.92066 1.21526 1.01845 1.37557 0.97749 0.91622 1.26045 1.03070 0.95816 0.94831 1.70132 1.39363 1.45490 1.02090 0.85406 0.78383 0.79041 0.77634 1.18476 1.20625 1.19358 1.22046 0.97664 0.79431 0.99987 1.20981 0.95027 0.88798 1.00482 0.93065 0.94316 0.92819 0.92204 0.92621 0.75529 0.92696 0.89227 0.88023 0.92687 0.89625 0.91999 0.90194 0.93364 0.86620 0.84886 0.89957 0.92753 1.01012 0.98623 0.92707 0.90983 0.90266 0.89257 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.96 71.98 0.64 -1.82 16 2 C -0.09 -1.22 2.56 -10.79 -0.03 -1.25 16 3 H 0.07 1.09 6.12 -2.39 -0.01 1.08 16 4 C 0.08 0.85 6.43 71.98 0.46 1.31 16 5 O -0.60 -8.43 13.12 -148.98 -1.95 -10.38 16 6 C 0.07 0.72 4.19 86.31 0.36 1.09 16 7 N -0.54 -7.71 3.69 -910.76 -3.36 -11.06 16 8 C 0.03 0.36 5.16 87.06 0.45 0.81 16 9 C 0.06 1.17 7.01 72.26 0.51 1.68 16 10 O -0.40 -11.80 8.73 -143.87 -1.26 -13.05 16 11 C 0.08 2.20 5.15 72.42 0.37 2.57 16 12 C -0.08 -1.81 0.63 -52.78 -0.03 -1.84 16 13 C -0.13 -3.15 5.78 30.57 0.18 -2.97 16 14 C 0.49 19.66 7.88 87.91 0.69 20.35 16 15 O -0.59 -29.65 17.59 -3.04 -0.05 -29.71 16 16 N -0.61 -24.71 2.93 -818.21 -2.40 -27.11 16 17 C 0.14 6.73 5.88 86.38 0.51 7.24 16 18 C 0.03 1.88 5.30 29.85 0.16 2.03 16 19 C -0.55 -33.49 9.11 25.60 0.23 -33.25 16 20 H 0.07 3.78 7.74 -2.91 -0.02 3.75 16 21 C 0.00 0.03 5.46 84.66 0.46 0.49 16 22 N -0.93 -60.18 13.29 21.45 0.28 -59.90 16 23 Si 0.97 46.53 29.54 68.60 2.03 48.56 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 27 C 0.13 4.06 6.02 86.75 0.52 4.58 16 28 C 0.07 1.11 3.58 84.12 0.30 1.41 16 29 H 0.05 1.17 6.66 -2.39 -0.02 1.15 16 30 H 0.04 0.83 7.70 -2.39 -0.02 0.82 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.40 1.97 9.12 -74.06 -0.68 1.30 16 35 H 0.05 0.36 8.12 -2.39 -0.02 0.34 16 36 H 0.09 0.73 7.78 -2.39 -0.02 0.71 16 37 H 0.10 0.78 7.40 -2.39 -0.02 0.76 16 38 H 0.05 0.55 6.73 -2.39 -0.02 0.53 16 39 H 0.09 1.65 8.14 -2.38 -0.02 1.64 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.51 7.17 -2.38 -0.02 1.50 16 42 H 0.05 1.65 7.84 -2.38 -0.02 1.63 16 43 H 0.12 2.53 7.85 -2.39 -0.02 2.51 16 44 H 0.13 2.43 7.94 -2.39 -0.02 2.42 16 45 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 46 H 0.05 2.71 7.92 -2.39 -0.02 2.69 16 47 H -0.03 -1.92 8.14 -2.39 -0.02 -1.94 16 48 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 49 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 50 H 0.07 2.66 6.65 -2.39 -0.02 2.64 16 51 H 0.08 2.20 6.87 -2.39 -0.02 2.19 16 52 H 0.09 1.25 5.74 -2.38 -0.01 1.23 16 53 H 0.07 0.74 7.40 -2.39 -0.02 0.72 16 Total: -1.00 -85.84 405.48 -0.70 -86.54 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.22 Total: 13.69 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 5.79 Total: 2.42 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -5.47 Total: -98.07 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -3.26 Total: -53.14 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -85.84 -0.70 -86.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274069245.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.082 kcal (2) G-P(sol) polarization free energy of solvation -85.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds