Wall clock time and date at job start Sat Apr 11 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99944 * 2 1 4 4 C 1.52998 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47103 * 305.00243 * 4 3 2 6 6 C 1.53004 * 109.47086 * 65.00344 * 4 3 2 7 7 C 1.50702 * 109.47174 * 185.00036 * 4 3 2 8 8 O 1.21277 * 120.00345 * 274.68319 * 7 4 3 9 9 N 1.34782 * 119.99883 * 94.68316 * 7 4 3 10 10 C 1.46930 * 120.58241 * 174.57713 * 9 7 4 11 11 C 1.53287 * 108.71814 * 125.84137 * 10 9 7 12 12 C 1.52407 * 109.41612 * 53.69081 * 11 10 9 13 13 C 1.53961 * 110.27475 * 177.60424 * 12 11 10 14 14 O 1.44556 * 104.69981 * 265.11796 * 13 12 11 15 15 C 1.44479 * 105.35742 * 319.97809 * 14 13 12 16 16 H 1.08995 * 110.36697 * 281.33404 * 15 14 13 17 17 C 1.52997 * 110.36573 * 159.00868 * 15 14 13 18 18 N 1.46501 * 109.46904 * 66.45427 * 17 15 14 19 19 C 1.36944 * 119.99718 * 179.97438 * 18 17 15 20 20 H 1.07991 * 119.99973 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99804 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99924 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47322 * 89.99734 * 23 21 19 25 25 H 1.48505 * 109.47236 * 209.99732 * 23 21 19 26 26 H 1.48503 * 109.46917 * 329.99308 * 23 21 19 27 27 C 1.54000 * 110.24982 * 62.62545 * 12 11 10 28 28 C 1.52409 * 111.01254 * 300.14347 * 12 11 10 29 29 C 1.46936 * 120.58116 * 354.59278 * 9 7 4 30 30 H 1.08997 * 109.47330 * 59.99497 * 1 2 3 31 31 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46405 * 299.99525 * 1 2 3 33 33 H 1.09002 * 109.47356 * 60.00117 * 3 2 1 34 34 H 1.09003 * 109.47367 * 300.00549 * 3 2 1 35 35 H 1.09000 * 109.46538 * 184.96046 * 6 4 3 36 36 H 1.08997 * 109.47011 * 304.95562 * 6 4 3 37 37 H 1.08997 * 109.46881 * 64.95827 * 6 4 3 38 38 H 1.08998 * 109.59585 * 6.06468 * 10 9 7 39 39 H 1.09002 * 109.71775 * 245.68512 * 10 9 7 40 40 H 1.09000 * 109.47805 * 293.71020 * 11 10 9 41 41 H 1.09007 * 109.47870 * 173.67521 * 11 10 9 42 42 H 1.08997 * 110.39081 * 146.31351 * 13 12 11 43 43 H 1.09002 * 110.39426 * 23.92338 * 13 12 11 44 44 H 1.09000 * 109.46826 * 186.45282 * 17 15 14 45 45 H 1.09001 * 109.47309 * 306.45020 * 17 15 14 46 46 H 0.96991 * 120.00596 * 359.97438 * 18 17 15 47 47 H 0.97002 * 119.99941 * 179.97438 * 22 21 19 48 48 H 1.08997 * 110.54580 * 0.06399 * 27 12 11 49 49 H 1.08999 * 110.54488 * 237.26075 * 27 12 11 50 50 H 1.08996 * 109.48136 * 179.83429 * 28 12 11 51 51 H 1.09000 * 109.47791 * 299.86742 * 28 12 11 52 52 H 1.09005 * 109.59253 * 353.92364 * 29 9 7 53 53 H 1.08991 * 109.59349 * 114.38201 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8515 0.5682 0.8409 6 6 3.9953 0.5370 -1.3084 7 6 4.1481 2.5560 0.1232 8 8 4.3230 3.2337 -0.8672 9 7 4.5015 3.0293 1.3347 10 6 5.2069 4.3121 1.4594 11 6 4.4287 5.2092 2.4287 12 6 4.2081 4.4658 3.7407 13 6 3.4798 5.3711 4.7509 14 8 4.5358 5.9629 5.5410 15 6 5.4926 4.9022 5.7567 16 1 5.1478 4.2351 6.5467 17 6 6.8626 5.4846 6.1100 18 7 6.7876 6.1545 7.4107 19 6 7.9005 6.7543 7.9371 20 1 8.8334 6.7331 7.3937 21 6 7.8296 7.3886 9.1698 22 7 6.6926 7.4141 9.8324 23 14 9.3474 8.2074 9.8876 24 1 9.4043 9.6226 9.4412 25 1 9.2820 8.1582 11.3703 26 1 10.5626 7.4921 9.4218 27 6 5.5596 4.1495 4.4079 28 6 3.4176 3.1824 3.5155 29 6 4.1885 2.2712 2.5538 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 5.0719 0.3704 -1.2724 36 1 3.4843 -0.4167 -1.4407 37 1 3.7571 1.1958 -2.1434 38 1 5.2659 4.7933 0.4832 39 1 6.2123 4.1431 1.8449 40 1 3.4645 5.4672 1.9906 41 1 4.9976 6.1195 2.6178 42 1 2.8184 4.7791 5.3834 43 1 2.9160 6.1450 4.2298 44 1 7.5978 4.6812 6.1570 45 1 7.1592 6.2044 5.3471 46 1 5.9498 6.1733 7.8991 47 1 6.6431 7.8570 10.6940 48 1 6.3831 4.5252 3.8007 49 1 5.6629 3.0771 4.5730 50 1 3.2770 2.6703 4.4674 51 1 2.4456 3.4249 3.0860 52 1 3.5757 1.4064 2.2993 53 1 5.1134 1.9403 3.0261 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276912550.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:49 Heat of formation + Delta-G solvation = -117.827912 kcal Electronic energy + Delta-G solvation = -31024.074372 eV Core-core repulsion = 26896.002712 eV Total energy + Delta-G solvation = -4128.071660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.14609 -39.79419 -38.28786 -37.00819 -34.55724 -34.16824 -33.22455 -31.63004 -31.48087 -29.45124 -27.83895 -27.65827 -26.21334 -25.38693 -24.26391 -23.59201 -22.65840 -22.28079 -20.75683 -19.90329 -18.40054 -17.92634 -17.09669 -16.79893 -16.43296 -16.17808 -16.06609 -15.72969 -15.37287 -15.05592 -15.01064 -14.61646 -14.37966 -14.08442 -13.82990 -13.66208 -13.48071 -13.21001 -13.07053 -12.90432 -12.76854 -12.58612 -12.25753 -12.14191 -12.01247 -11.80879 -11.70307 -11.51986 -11.43309 -11.27726 -11.16295 -10.96351 -10.79793 -10.65930 -10.45316 -10.42935 -10.18331 -9.99621 -9.98461 -9.63263 -9.36098 -8.92775 -8.84563 -6.86585 -5.70907 -2.99475 2.16924 2.58909 3.34765 3.46688 3.51221 3.53093 4.08107 4.15147 4.27492 4.32923 4.44830 4.49560 4.53402 4.63176 4.72312 4.81497 4.86492 4.87917 4.90162 4.99586 5.05636 5.09590 5.14978 5.21545 5.24790 5.27106 5.36637 5.37561 5.45679 5.50257 5.55465 5.60729 5.61235 5.62799 5.73855 5.79640 5.81615 5.89005 5.90727 6.00361 6.08287 6.12755 6.24731 6.36659 6.57789 6.59866 6.76396 7.04931 7.25566 7.73184 7.82470 8.47490 9.58825 10.17293 10.52734 11.51901 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.002059 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.544142 B =13598.520913 C =14059.596422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.074 3.926 4 C -0.111 4.111 5 H 0.101 0.899 6 C -0.134 4.134 7 C 0.522 3.478 8 O -0.537 6.537 9 N -0.607 5.607 10 C 0.109 3.891 11 C -0.117 4.117 12 C -0.091 4.091 13 C 0.052 3.948 14 O -0.353 6.353 15 C 0.071 3.929 16 H 0.067 0.933 17 C 0.160 3.840 18 N -0.728 5.728 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.140 4.140 28 C -0.120 4.120 29 C 0.101 3.899 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.030 0.970 45 H 0.025 0.975 46 H 0.387 0.613 47 H 0.254 0.746 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.068 0.932 52 H 0.088 0.912 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.733 -16.747 -21.279 29.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.003 4.003 4 C -0.133 4.133 5 H 0.119 0.881 6 C -0.191 4.191 7 C 0.310 3.690 8 O -0.413 6.413 9 N -0.340 5.340 10 C -0.013 4.013 11 C -0.155 4.155 12 C -0.091 4.091 13 C -0.025 4.025 14 O -0.271 6.271 15 C 0.013 3.987 16 H 0.085 0.915 17 C 0.033 3.967 18 N -0.373 5.373 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.178 4.178 28 C -0.158 4.158 29 C -0.022 4.022 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.075 0.925 43 H 0.104 0.896 44 H 0.047 0.953 45 H 0.043 0.957 46 H 0.221 0.779 47 H 0.064 0.936 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.087 0.913 52 H 0.107 0.893 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.329 -16.263 -21.702 29.791 hybrid contribution 0.242 0.532 0.750 0.951 sum -12.087 -15.732 -20.952 28.854 Atomic orbital electron populations 1.22773 0.80485 1.03009 1.00246 1.87849 1.20041 1.27222 1.95485 1.22320 0.91610 0.85201 1.01157 1.21314 0.94919 0.94598 1.02432 0.88080 1.21637 1.01277 1.01011 0.95195 1.20402 0.78149 0.87752 0.82739 1.90694 1.54849 1.59150 1.36656 1.48154 1.57800 1.22150 1.05938 1.21716 0.95198 0.83244 1.01116 1.21847 1.01221 0.98573 0.93821 1.21498 0.96051 0.95457 0.96120 1.23380 0.91217 0.96168 0.91734 1.89352 1.32500 1.33066 1.72187 1.23306 0.91428 0.88742 0.95222 0.91525 1.20723 0.91200 0.95110 0.89702 1.42285 1.11682 1.65462 1.17843 1.19226 0.89894 1.27271 1.00621 0.91243 1.24751 0.97057 1.01598 0.97688 1.69679 1.24245 1.48802 1.15319 0.86184 0.82285 0.79471 0.78211 1.21743 1.21804 1.20797 1.23096 0.96776 1.00930 0.97002 1.21860 0.98697 0.95478 0.99748 1.21945 1.00654 0.94484 0.85089 0.93908 0.89323 0.93847 0.92851 0.92288 0.92339 0.90942 0.91425 0.88868 0.90873 0.91507 0.89657 0.92544 0.89603 0.95286 0.95706 0.77922 0.93574 0.90208 0.90557 0.89977 0.91305 0.89340 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.98 10.16 -35.23 -0.36 -3.34 16 3 C 0.07 0.55 5.20 37.16 0.19 0.74 16 4 C -0.11 -0.88 2.16 -91.77 -0.20 -1.08 16 5 H 0.10 0.67 6.18 -51.93 -0.32 0.35 16 6 C -0.13 -1.07 8.89 37.16 0.33 -0.73 16 7 C 0.52 5.36 6.69 -10.98 -0.07 5.29 16 8 O -0.54 -7.40 15.58 5.56 0.09 -7.32 16 9 N -0.61 -5.48 2.96 -172.64 -0.51 -6.00 16 10 C 0.11 1.07 6.13 -3.66 -0.02 1.04 16 11 C -0.12 -1.15 4.63 -26.89 -0.12 -1.28 16 12 C -0.09 -0.91 0.68 -154.09 -0.11 -1.02 16 13 C 0.05 0.65 6.73 37.66 0.25 0.91 16 14 O -0.35 -6.29 11.33 -35.23 -0.40 -6.68 16 15 C 0.07 1.16 3.34 -25.89 -0.09 1.07 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 17 C 0.16 3.29 5.87 -4.04 -0.02 3.26 16 18 N -0.73 -19.22 5.59 -59.91 -0.33 -19.55 16 19 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.95 13.06 55.49 0.72 -28.22 16 23 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 27 C -0.14 -1.62 4.96 -25.37 -0.13 -1.74 16 28 C -0.12 -0.90 4.64 -26.89 -0.12 -1.03 16 29 C 0.10 0.70 5.85 -3.66 -0.02 0.68 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.05 0.35 8.13 -51.93 -0.42 -0.07 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.52 7.70 -51.93 -0.40 0.13 16 37 H 0.07 0.62 7.68 -51.93 -0.40 0.22 16 38 H 0.09 1.02 6.99 -51.93 -0.36 0.66 16 39 H 0.07 0.69 6.86 -51.93 -0.36 0.33 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.65 7.83 -51.93 -0.41 0.24 16 43 H 0.09 0.99 7.85 -51.93 -0.41 0.58 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.39 10.88 7.67 -40.82 -0.31 10.57 16 47 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.08 0.93 6.32 -51.93 -0.33 0.61 16 49 H 0.08 0.75 6.58 -51.93 -0.34 0.40 16 50 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 52 H 0.09 0.49 5.50 -51.93 -0.29 0.20 16 53 H 0.08 0.51 6.85 -51.93 -0.36 0.15 16 LS Contribution 407.76 15.07 6.14 6.14 Total: -1.00 -34.80 407.76 -8.25 -43.05 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -9.32 Total: 4.30 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 0.74 Total: -0.18 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.12 Total: -53.77 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.67 Total: -17.34 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.80 -8.25 -43.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276912550.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.776 kcal (2) G-P(sol) polarization free energy of solvation -34.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds