Wall clock time and date at job start Sat Apr 11 2020 06:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99944 * 2 1 4 4 C 1.52998 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47103 * 305.00243 * 4 3 2 6 6 C 1.53004 * 109.47086 * 65.00344 * 4 3 2 7 7 C 1.50702 * 109.47174 * 185.00036 * 4 3 2 8 8 O 1.21277 * 120.00345 * 274.68319 * 7 4 3 9 9 N 1.34782 * 119.99883 * 94.68316 * 7 4 3 10 10 C 1.46930 * 120.58241 * 174.57713 * 9 7 4 11 11 C 1.53287 * 108.71814 * 125.84137 * 10 9 7 12 12 C 1.52407 * 109.41612 * 53.69081 * 11 10 9 13 13 C 1.53961 * 110.27475 * 177.60424 * 12 11 10 14 14 O 1.44556 * 104.69981 * 265.11796 * 13 12 11 15 15 C 1.44479 * 105.35742 * 319.97809 * 14 13 12 16 16 H 1.08995 * 110.36697 * 281.33404 * 15 14 13 17 17 C 1.52997 * 110.36573 * 159.00868 * 15 14 13 18 18 N 1.46501 * 109.46904 * 66.45427 * 17 15 14 19 19 C 1.36944 * 119.99718 * 179.97438 * 18 17 15 20 20 H 1.07991 * 119.99973 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99804 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99924 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47322 * 89.99734 * 23 21 19 25 25 H 1.48505 * 109.47236 * 209.99732 * 23 21 19 26 26 H 1.48503 * 109.46917 * 329.99308 * 23 21 19 27 27 C 1.54000 * 110.24982 * 62.62545 * 12 11 10 28 28 C 1.52409 * 111.01254 * 300.14347 * 12 11 10 29 29 C 1.46936 * 120.58116 * 354.59278 * 9 7 4 30 30 H 1.08997 * 109.47330 * 59.99497 * 1 2 3 31 31 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46405 * 299.99525 * 1 2 3 33 33 H 1.09002 * 109.47356 * 60.00117 * 3 2 1 34 34 H 1.09003 * 109.47367 * 300.00549 * 3 2 1 35 35 H 1.09000 * 109.46538 * 184.96046 * 6 4 3 36 36 H 1.08997 * 109.47011 * 304.95562 * 6 4 3 37 37 H 1.08997 * 109.46881 * 64.95827 * 6 4 3 38 38 H 1.08998 * 109.59585 * 6.06468 * 10 9 7 39 39 H 1.09002 * 109.71775 * 245.68512 * 10 9 7 40 40 H 1.09000 * 109.47805 * 293.71020 * 11 10 9 41 41 H 1.09007 * 109.47870 * 173.67521 * 11 10 9 42 42 H 1.08997 * 110.39081 * 146.31351 * 13 12 11 43 43 H 1.09002 * 110.39426 * 23.92338 * 13 12 11 44 44 H 1.09000 * 109.46826 * 186.45282 * 17 15 14 45 45 H 1.09001 * 109.47309 * 306.45020 * 17 15 14 46 46 H 0.96991 * 120.00596 * 359.97438 * 18 17 15 47 47 H 0.97002 * 119.99941 * 179.97438 * 22 21 19 48 48 H 1.08997 * 110.54580 * 0.06399 * 27 12 11 49 49 H 1.08999 * 110.54488 * 237.26075 * 27 12 11 50 50 H 1.08996 * 109.48136 * 179.83429 * 28 12 11 51 51 H 1.09000 * 109.47791 * 299.86742 * 28 12 11 52 52 H 1.09005 * 109.59253 * 353.92364 * 29 9 7 53 53 H 1.08991 * 109.59349 * 114.38201 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8515 0.5682 0.8409 6 6 3.9953 0.5370 -1.3084 7 6 4.1481 2.5560 0.1232 8 8 4.3230 3.2337 -0.8672 9 7 4.5015 3.0293 1.3347 10 6 5.2069 4.3121 1.4594 11 6 4.4287 5.2092 2.4287 12 6 4.2081 4.4658 3.7407 13 6 3.4798 5.3711 4.7509 14 8 4.5358 5.9629 5.5410 15 6 5.4926 4.9022 5.7567 16 1 5.1478 4.2351 6.5467 17 6 6.8626 5.4846 6.1100 18 7 6.7876 6.1545 7.4107 19 6 7.9005 6.7543 7.9371 20 1 8.8334 6.7331 7.3937 21 6 7.8296 7.3886 9.1698 22 7 6.6926 7.4141 9.8324 23 14 9.3474 8.2074 9.8876 24 1 9.4043 9.6226 9.4412 25 1 9.2820 8.1582 11.3703 26 1 10.5626 7.4921 9.4218 27 6 5.5596 4.1495 4.4079 28 6 3.4176 3.1824 3.5155 29 6 4.1885 2.2712 2.5538 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 5.0719 0.3704 -1.2724 36 1 3.4843 -0.4167 -1.4407 37 1 3.7571 1.1958 -2.1434 38 1 5.2659 4.7933 0.4832 39 1 6.2123 4.1431 1.8449 40 1 3.4645 5.4672 1.9906 41 1 4.9976 6.1195 2.6178 42 1 2.8184 4.7791 5.3834 43 1 2.9160 6.1450 4.2298 44 1 7.5978 4.6812 6.1570 45 1 7.1592 6.2044 5.3471 46 1 5.9498 6.1733 7.8991 47 1 6.6431 7.8570 10.6940 48 1 6.3831 4.5252 3.8007 49 1 5.6629 3.0771 4.5730 50 1 3.2770 2.6703 4.4674 51 1 2.4456 3.4249 3.0860 52 1 3.5757 1.4064 2.2993 53 1 5.1134 1.9403 3.0261 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276912550.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:48 Heat of formation + Delta-G solvation = -142.116531 kcal Electronic energy + Delta-G solvation = -31025.127605 eV Core-core repulsion = 26896.002712 eV Total energy + Delta-G solvation = -4129.124894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.97106 -40.72345 -38.85732 -37.98132 -36.40570 -34.90599 -34.09786 -33.50692 -32.17633 -31.01179 -28.56076 -28.31936 -27.08014 -26.70753 -24.98597 -24.52469 -24.29839 -23.00869 -22.17884 -20.67086 -19.24038 -19.11171 -18.64745 -17.47267 -17.23898 -17.05000 -16.77470 -16.58097 -16.47026 -16.32754 -16.10690 -15.67416 -15.39341 -15.15684 -14.95564 -14.66864 -14.53221 -14.32833 -14.20762 -13.85211 -13.56365 -13.48747 -13.34502 -13.10839 -13.00249 -12.86008 -12.77386 -12.47118 -12.39409 -12.27605 -12.22224 -12.17570 -12.03352 -11.89376 -11.85919 -11.54650 -11.37863 -11.30807 -10.97752 -10.78292 -10.66589 -10.57246 -9.68478 -9.00361 -7.94444 -5.23826 1.42424 1.46360 1.49278 1.57501 1.88417 2.55748 2.81908 3.01802 3.38919 3.43748 3.49965 3.63030 3.72370 3.76311 3.91390 3.94918 4.01894 4.06163 4.20479 4.26565 4.28463 4.33681 4.43114 4.48101 4.49983 4.55312 4.56801 4.62061 4.62890 4.66664 4.73434 4.76841 4.81272 4.82949 4.89488 4.90457 4.93586 4.99639 5.01240 5.04245 5.04972 5.19989 5.25481 5.28043 5.35166 5.47830 5.52362 6.06541 6.12946 6.27252 6.33749 7.06973 7.32953 8.09318 8.32666 9.29330 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.002059 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.544142 B =13598.520913 C =14059.596422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.078 3.922 4 C -0.106 4.106 5 H 0.122 0.878 6 C -0.131 4.131 7 C 0.520 3.480 8 O -0.580 6.580 9 N -0.603 5.603 10 C 0.112 3.888 11 C -0.110 4.110 12 C -0.079 4.079 13 C 0.046 3.954 14 O -0.396 6.396 15 C 0.075 3.925 16 H 0.063 0.937 17 C 0.156 3.844 18 N -0.744 5.744 19 C -0.247 4.247 20 H 0.077 0.923 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.977 3.023 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.267 1.267 27 C -0.129 4.129 28 C -0.115 4.115 29 C 0.099 3.901 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.017 0.983 46 H 0.374 0.626 47 H 0.251 0.749 48 H 0.078 0.922 49 H 0.104 0.896 50 H 0.097 0.903 51 H 0.077 0.923 52 H 0.111 0.889 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.877 -18.733 -21.658 31.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C 0.000 4.000 4 C -0.127 4.127 5 H 0.140 0.860 6 C -0.189 4.189 7 C 0.309 3.691 8 O -0.459 6.459 9 N -0.335 5.335 10 C -0.010 4.010 11 C -0.148 4.148 12 C -0.080 4.080 13 C -0.030 4.030 14 O -0.315 6.315 15 C 0.017 3.983 16 H 0.081 0.919 17 C 0.030 3.970 18 N -0.386 5.386 19 C -0.379 4.379 20 H 0.095 0.905 21 C -0.272 4.272 22 N -0.621 5.621 23 Si 0.806 3.194 24 H -0.216 1.216 25 H -0.220 1.220 26 H -0.191 1.191 27 C -0.166 4.166 28 C -0.153 4.153 29 C -0.023 4.023 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.060 0.940 45 H 0.035 0.965 46 H 0.205 0.795 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.122 0.878 50 H 0.116 0.884 51 H 0.095 0.905 52 H 0.129 0.871 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.465 -18.284 -22.105 31.278 hybrid contribution 0.239 1.156 0.811 1.432 sum -12.226 -17.127 -21.294 29.937 Atomic orbital electron populations 1.22948 0.79262 1.04074 1.00830 1.87820 1.21404 1.27159 1.95579 1.22255 0.91160 0.85309 1.01230 1.21303 0.95236 0.93184 1.03001 0.86049 1.21603 1.01455 1.00978 0.94822 1.20818 0.77592 0.88276 0.82397 1.90679 1.56679 1.60438 1.38141 1.48225 1.57018 1.21809 1.06480 1.21605 0.95564 0.83700 1.00161 1.21760 1.01096 0.98040 0.93945 1.21403 0.95243 0.96316 0.95001 1.23621 0.90444 0.96910 0.92061 1.89302 1.34128 1.34698 1.73392 1.23198 0.88970 0.88444 0.97691 0.91867 1.20930 0.94491 0.94789 0.86837 1.42524 1.10486 1.65903 1.19711 1.19671 0.90828 1.26625 1.00747 0.90546 1.25644 1.00179 1.02931 0.98398 1.69846 1.26468 1.50184 1.15596 0.85086 0.79114 0.78248 0.76973 1.21586 1.21983 1.19126 1.23053 0.97643 1.01795 0.94152 1.21859 0.98595 0.94041 1.00793 1.22153 1.01575 0.94653 0.83916 0.93657 0.88090 0.92954 0.91711 0.93370 0.92250 0.90081 0.93137 0.90470 0.90337 0.91295 0.91247 0.91267 0.89142 0.93960 0.96528 0.79468 0.94016 0.90331 0.87808 0.88428 0.90465 0.87145 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.45 16 2 O -0.40 -5.23 10.16 -148.98 -1.51 -6.74 16 3 C 0.08 0.99 5.20 71.98 0.37 1.36 16 4 C -0.11 -1.45 2.16 -11.54 -0.02 -1.48 16 5 H 0.12 1.16 6.18 -2.39 -0.01 1.15 16 6 C -0.13 -1.94 8.89 71.98 0.64 -1.30 16 7 C 0.52 9.94 6.69 87.66 0.59 10.52 16 8 O -0.58 -15.96 15.58 -3.02 -0.05 -16.01 16 9 N -0.60 -9.55 2.96 -818.50 -2.43 -11.97 16 10 C 0.11 2.06 6.13 86.39 0.53 2.59 16 11 C -0.11 -2.06 4.63 30.49 0.14 -1.92 16 12 C -0.08 -1.41 0.68 -51.91 -0.04 -1.45 16 13 C 0.05 1.09 6.73 72.31 0.49 1.58 16 14 O -0.40 -14.13 11.33 -148.98 -1.69 -15.82 16 15 C 0.07 2.39 3.34 31.14 0.10 2.49 16 16 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 17 C 0.16 6.38 5.87 86.38 0.51 6.88 16 18 N -0.74 -39.81 5.59 -343.45 -1.92 -41.73 16 19 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 20 H 0.08 4.21 7.83 -2.92 -0.02 4.19 16 21 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 22 N -0.97 -61.38 13.06 21.65 0.28 -61.10 16 23 Si 0.98 47.18 29.55 68.60 2.03 49.20 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 C -0.13 -2.69 4.96 31.48 0.16 -2.53 16 28 C -0.11 -1.31 4.64 30.49 0.14 -1.17 16 29 C 0.10 0.99 5.85 86.39 0.51 1.49 16 30 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.05 7.70 -2.39 -0.02 1.03 16 37 H 0.05 0.92 7.68 -2.39 -0.02 0.90 16 38 H 0.08 1.69 6.99 -2.39 -0.02 1.68 16 39 H 0.08 1.36 6.86 -2.39 -0.02 1.35 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.07 1.45 7.83 -2.39 -0.02 1.43 16 43 H 0.09 2.01 7.85 -2.39 -0.02 1.99 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.37 21.60 7.67 -92.71 -0.71 20.89 16 47 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 48 H 0.08 1.69 6.32 -2.39 -0.02 1.67 16 49 H 0.10 1.62 6.58 -2.39 -0.02 1.61 16 50 H 0.10 0.91 8.12 -2.39 -0.02 0.89 16 51 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.11 0.69 5.50 -2.38 -0.01 0.68 16 53 H 0.09 0.76 6.85 -2.39 -0.02 0.74 16 Total: -1.00 -76.79 407.76 1.57 -75.23 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.18 Total: 28.12 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 6.67 Total: 0.81 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -4.06 Total: -114.80 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -3.25 Total: -38.57 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.20 kcal Total: -76.79 1.57 -75.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276912550.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.890 kcal (2) G-P(sol) polarization free energy of solvation -76.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds