Wall clock time and date at job start Sat Apr 11 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47151 * 2 1 4 4 C 1.52999 * 109.47361 * 119.99810 * 2 1 3 5 5 C 1.50700 * 109.47218 * 295.00093 * 4 2 1 6 6 O 1.21285 * 119.99929 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00099 * 180.27140 * 5 4 2 8 8 C 1.46500 * 120.00153 * 174.44406 * 7 5 4 9 9 C 1.53003 * 109.54141 * 304.03803 * 8 7 5 10 10 N 1.46496 * 109.46741 * 305.57746 * 9 8 7 11 11 C 1.36943 * 119.99919 * 175.02388 * 10 9 8 12 12 H 1.08007 * 119.99786 * 0.02562 * 11 10 9 13 13 C 1.38811 * 120.00124 * 179.97438 * 11 10 9 14 14 N 1.31619 * 120.00142 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00012 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47282 * 90.00028 * 15 13 11 17 17 H 1.48502 * 109.47322 * 210.00434 * 15 13 11 18 18 H 1.48499 * 109.47073 * 330.00123 * 15 13 11 19 19 C 1.53174 * 109.54503 * 183.77004 * 8 7 5 20 20 C 1.53098 * 109.15950 * 297.11103 * 19 8 7 21 21 O 1.42893 * 109.41638 * 302.39172 * 20 19 8 22 22 C 1.42904 * 114.10237 * 61.16131 * 21 20 19 23 23 C 1.53091 * 109.41149 * 298.84141 * 22 21 20 24 24 C 1.52997 * 109.47208 * 240.00100 * 2 1 3 25 25 H 1.09005 * 109.82673 * 185.57368 * 24 2 1 26 26 C 1.54381 * 109.83550 * 64.58640 * 24 2 1 27 27 C 1.55300 * 102.25536 * 219.13186 * 26 24 2 28 28 C 1.54952 * 100.94357 * 34.13197 * 27 26 24 29 29 O 1.43243 * 109.83079 * 306.45331 * 24 2 1 30 30 H 1.09000 * 109.46903 * 60.00269 * 1 2 3 31 31 H 1.09001 * 109.47151 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46778 * 300.00380 * 1 2 3 33 33 H 1.08998 * 109.47728 * 174.99426 * 4 2 1 34 34 H 1.09003 * 109.46808 * 54.99839 * 4 2 1 35 35 H 0.97003 * 119.99570 * 354.43938 * 7 5 4 36 36 H 1.08999 * 109.46874 * 65.57716 * 9 8 7 37 37 H 1.08994 * 109.47049 * 185.57817 * 9 8 7 38 38 H 0.96997 * 120.00724 * 355.02295 * 10 9 8 39 39 H 0.96995 * 120.00080 * 179.97438 * 14 13 11 40 40 H 1.09000 * 109.52076 * 57.01709 * 19 8 7 41 41 H 1.09001 * 109.52066 * 177.20860 * 19 8 7 42 42 H 1.09003 * 109.47423 * 182.40944 * 20 19 8 43 43 H 1.09001 * 109.49122 * 62.38267 * 20 19 8 44 44 H 1.08993 * 109.48502 * 178.86076 * 22 21 20 45 45 H 1.08998 * 109.48819 * 58.82285 * 22 21 20 46 46 H 1.08998 * 109.52476 * 297.70317 * 23 22 21 47 47 H 1.09001 * 109.52423 * 177.50763 * 23 22 21 48 48 H 1.08999 * 110.84355 * 337.32184 * 26 24 2 49 49 H 1.08995 * 110.84432 * 100.93496 * 26 24 2 50 50 H 1.08994 * 111.12625 * 276.20981 * 27 26 24 51 51 H 1.09002 * 111.16240 * 152.06383 * 27 26 24 52 52 H 1.08991 * 110.31037 * 204.63797 * 28 27 26 53 53 H 1.09006 * 110.30492 * 82.46906 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4766 6 8 1.0109 1.0870 2.3633 7 7 1.9897 -0.3887 3.6999 8 6 1.7096 0.4271 4.8840 9 6 2.3480 1.8076 4.7172 10 7 3.7755 1.6534 4.4262 11 6 4.5377 2.7534 4.1358 12 1 4.0866 3.7346 4.1216 13 6 5.8904 2.6074 3.8606 14 7 6.4404 1.4117 3.8783 15 14 6.9304 4.1079 3.4651 16 1 7.4994 4.6606 4.7205 17 1 8.0338 3.7185 2.5508 18 1 6.0845 5.1375 2.8096 19 6 2.2852 -0.2588 6.1268 20 6 1.5840 -1.6049 6.3279 21 8 0.1759 -1.3937 6.4482 22 6 -0.4254 -0.7982 5.2967 23 6 0.1950 0.5802 5.0542 24 6 2.0400 -0.7212 -1.2492 25 1 3.1255 -0.8116 -1.2067 26 6 1.6271 0.0640 -2.5127 27 6 1.2540 -1.0744 -3.5010 28 6 0.6556 -2.1229 -2.5296 29 8 1.4472 -2.0224 -1.3352 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.1263 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2952 35 1 2.4259 -1.2498 3.7962 36 1 1.8643 2.3345 3.8946 37 1 2.2243 2.3787 5.6372 38 1 4.1808 0.7723 4.4392 39 1 7.3855 1.3097 3.6856 40 1 3.3543 -0.4217 5.9906 41 1 2.1202 0.3719 7.0003 42 1 1.9595 -2.0782 7.2351 43 1 1.7831 -2.2500 5.4721 44 1 -1.4974 -0.6905 5.4611 45 1 -0.2528 -1.4325 4.4273 46 1 -0.0122 1.2279 5.9060 47 1 -0.2306 1.0174 4.1509 48 1 0.7651 0.6995 -2.3099 49 1 2.4621 0.6512 -2.8946 50 1 2.1393 -1.4644 -4.0032 51 1 0.5105 -0.7396 -4.2243 52 1 0.7379 -3.1230 -2.9550 53 1 -0.3866 -1.8872 -2.3139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281282511.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:59 Heat of formation + Delta-G solvation = -147.846938 kcal Electronic energy + Delta-G solvation = -32368.534196 eV Core-core repulsion = 28239.160813 eV Total energy + Delta-G solvation = -4129.373383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.78445 -40.72470 -39.47730 -37.29165 -35.56886 -35.21748 -33.27591 -32.93624 -32.28101 -32.02456 -29.51187 -28.60066 -28.08044 -25.43910 -24.71954 -24.35990 -23.07805 -22.65594 -21.84160 -20.54864 -20.25304 -19.25441 -18.30068 -17.73239 -17.19199 -17.01433 -16.85074 -16.71231 -16.43270 -16.30763 -15.58363 -15.56514 -15.33245 -15.13789 -14.85397 -14.77181 -14.66977 -14.23001 -13.93757 -13.67914 -13.58454 -13.23322 -13.18090 -13.01689 -12.80214 -12.78150 -12.68992 -12.65484 -12.33605 -12.26473 -12.18431 -12.13018 -11.96188 -11.81587 -11.63999 -11.60279 -11.45196 -11.32450 -11.00027 -10.61274 -10.42387 -10.26505 -9.80037 -8.95058 -7.95772 -5.21670 1.43982 1.44549 1.53166 1.83409 2.32465 2.54406 2.95170 2.96451 3.37062 3.56945 3.61909 3.71742 3.80495 3.88685 3.90740 4.01407 4.02478 4.07881 4.21151 4.25274 4.28251 4.34286 4.41730 4.47327 4.56638 4.67385 4.69245 4.75855 4.78657 4.81460 4.85569 4.86908 4.87588 4.89852 4.91488 4.96757 5.07358 5.10607 5.12472 5.15361 5.15961 5.23485 5.27999 5.34671 5.46313 5.52856 5.74173 6.16144 6.24878 6.26846 6.71920 7.34587 7.46203 8.08225 8.37459 9.26961 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007466 B = 0.004491 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3749.227115 B = 6232.947322 C = 9116.451450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 H 0.060 0.940 4 C -0.125 4.125 5 C 0.521 3.479 6 O -0.562 6.562 7 N -0.710 5.710 8 C 0.181 3.819 9 C 0.146 3.854 10 N -0.726 5.726 11 C -0.243 4.243 12 H 0.060 0.940 13 C -0.064 4.064 14 N -0.961 5.961 15 Si 0.965 3.035 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.279 1.279 19 C -0.148 4.148 20 C 0.066 3.934 21 O -0.393 6.393 22 C 0.073 3.927 23 C -0.155 4.155 24 C 0.086 3.914 25 H 0.072 0.928 26 C -0.155 4.155 27 C -0.148 4.148 28 C 0.043 3.957 29 O -0.390 6.390 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.404 0.596 36 H 0.025 0.975 37 H 0.012 0.988 38 H 0.378 0.622 39 H 0.251 0.749 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.052 0.948 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.099 0.901 52 H 0.095 0.905 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.241 -11.085 -8.703 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.165 4.165 5 C 0.309 3.691 6 O -0.441 6.441 7 N -0.362 5.362 8 C 0.095 3.905 9 C 0.018 3.982 10 N -0.369 5.369 11 C -0.375 4.375 12 H 0.078 0.922 13 C -0.257 4.257 14 N -0.612 5.612 15 Si 0.795 3.205 16 H -0.213 1.213 17 H -0.218 1.218 18 H -0.204 1.204 19 C -0.187 4.187 20 C -0.011 4.011 21 O -0.312 6.312 22 C -0.004 4.004 23 C -0.194 4.194 24 C 0.029 3.971 25 H 0.090 0.910 26 C -0.192 4.192 27 C -0.186 4.186 28 C -0.033 4.033 29 O -0.310 6.310 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.240 0.760 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.211 0.789 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.126 0.874 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.103 0.897 50 H 0.100 0.900 51 H 0.117 0.883 52 H 0.113 0.887 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.730 -10.373 -8.490 19.916 hybrid contribution 1.603 0.863 -0.371 1.858 sum -13.127 -9.510 -8.861 18.474 Atomic orbital electron populations 1.21765 0.93894 1.01626 1.01954 1.21148 0.97534 0.98224 0.92928 0.92157 1.21628 1.02530 1.00601 0.91748 1.20880 0.77910 0.85254 0.85080 1.90564 1.41003 1.25660 1.86842 1.45913 1.62055 1.22631 1.05609 1.20372 0.94678 0.90305 0.85150 1.21080 0.84755 0.95323 0.97059 1.42229 1.04101 1.06415 1.84192 1.19490 0.91239 0.88536 1.38227 0.92174 1.25351 0.97770 0.99087 1.03520 1.69765 1.11642 1.22082 1.57681 0.85270 0.78448 0.79355 0.77467 1.21326 1.21774 1.20409 1.22358 1.00854 0.98669 0.96778 1.22663 0.80415 0.94534 1.03448 1.87892 1.21767 1.81558 1.39942 1.22517 0.97942 0.91681 0.88257 1.22465 0.94244 0.99520 1.03194 1.22733 0.96927 0.83007 0.94455 0.90961 1.23236 1.02911 0.98804 0.94263 1.23241 1.02279 0.95004 0.98035 1.23553 0.94968 1.00487 0.84317 1.88386 1.66545 1.32020 1.44068 0.92329 0.92280 0.92796 0.89705 0.87214 0.75996 0.95695 0.97010 0.78909 0.93987 0.90862 0.90202 0.86845 0.92007 0.87445 0.92931 0.90633 0.90285 0.89949 0.89741 0.90049 0.88280 0.88678 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.47 71.98 0.61 -2.81 16 2 C -0.08 -2.17 1.86 -10.79 -0.02 -2.19 16 3 H 0.06 1.98 7.96 -2.39 -0.02 1.96 16 4 C -0.13 -3.56 5.04 29.85 0.15 -3.41 16 5 C 0.52 17.51 6.96 87.66 0.61 18.12 16 6 O -0.56 -22.17 10.27 -3.05 -0.03 -22.20 16 7 N -0.71 -21.84 3.75 -422.37 -1.59 -23.42 16 8 C 0.18 5.95 0.32 3.72 0.00 5.95 16 9 C 0.15 6.34 4.80 86.38 0.41 6.75 16 10 N -0.73 -37.20 5.21 -343.45 -1.79 -38.99 16 11 C -0.24 -14.02 9.99 84.03 0.84 -13.18 16 12 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 13 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 14 N -0.96 -57.62 13.06 21.65 0.28 -57.34 16 15 Si 0.97 47.05 29.55 68.60 2.03 49.07 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 18 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 19 C -0.15 -4.34 4.82 30.69 0.15 -4.19 16 20 C 0.07 1.51 6.67 72.01 0.48 1.99 16 21 O -0.39 -9.94 10.76 -148.98 -1.60 -11.54 16 22 C 0.07 1.74 6.68 72.01 0.48 2.22 16 23 C -0.16 -4.52 4.81 30.69 0.15 -4.37 16 24 C 0.09 2.00 3.21 31.06 0.10 2.10 16 25 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 26 C -0.15 -2.85 6.36 31.85 0.20 -2.65 16 27 C -0.15 -2.07 7.16 32.05 0.23 -1.84 16 28 C 0.04 0.69 7.71 72.65 0.56 1.25 16 29 O -0.39 -8.87 9.82 -148.98 -1.46 -10.33 16 30 H 0.06 1.31 6.35 -2.39 -0.02 1.29 16 31 H 0.06 1.38 7.54 -2.39 -0.02 1.36 16 32 H 0.05 1.62 5.95 -2.39 -0.01 1.60 16 33 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.11 2.65 8.01 -2.39 -0.02 2.64 16 35 H 0.40 10.64 7.41 -92.71 -0.69 9.95 16 36 H 0.03 1.22 6.26 -2.39 -0.01 1.21 16 37 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.38 19.72 6.52 -92.71 -0.60 19.11 16 39 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.07 2.40 7.23 -2.39 -0.02 2.38 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 1.25 7.02 -2.39 -0.02 1.23 16 44 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.05 1.22 7.75 -2.39 -0.02 1.20 16 46 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.08 2.58 6.25 -2.39 -0.01 2.57 16 48 H 0.08 1.52 6.07 -2.39 -0.01 1.51 16 49 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 52 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 53 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -69.33 398.25 0.88 -68.46 By element: Atomic # 1 Polarization: 46.19 SS G_CDS: -0.38 Total: 45.81 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 5.42 Total: 0.49 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -3.09 Total: -119.75 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -3.10 Total: -44.07 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -69.33 0.88 -68.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281282511.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.390 kcal (2) G-P(sol) polarization free energy of solvation -69.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds