Wall clock time and date at job start Sat Apr 11 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46964 * 2 1 4 4 C 1.53004 * 109.46972 * 239.99898 * 2 1 3 5 5 C 1.50697 * 109.47488 * 66.68783 * 4 2 1 6 6 O 1.21283 * 119.99498 * 6.28811 * 5 4 2 7 7 N 1.34776 * 120.00041 * 186.28547 * 5 4 2 8 8 C 1.46502 * 119.99534 * 184.82981 * 7 5 4 9 9 C 1.52996 * 109.54486 * 56.08406 * 8 7 5 10 10 N 1.46499 * 109.47490 * 62.05062 * 9 8 7 11 11 C 1.36935 * 119.99889 * 184.84723 * 10 9 8 12 12 H 1.07997 * 120.00503 * 4.98519 * 11 10 9 13 13 C 1.38821 * 119.99597 * 184.99254 * 11 10 9 14 14 N 1.31618 * 119.99501 * 184.87981 * 13 11 10 15 15 Si 1.86800 * 119.99868 * 4.87402 * 13 11 10 16 16 H 1.48505 * 109.46772 * 94.71685 * 15 13 11 17 17 H 1.48502 * 109.46948 * 214.70725 * 15 13 11 18 18 H 1.48493 * 109.47417 * 334.71403 * 15 13 11 19 19 C 1.53174 * 109.54318 * 295.81019 * 8 7 5 20 20 C 1.53085 * 109.16735 * 297.11836 * 19 8 7 21 21 O 1.42906 * 109.41343 * 302.38899 * 20 19 8 22 22 C 1.42901 * 114.09435 * 61.16233 * 21 20 19 23 23 C 1.53090 * 109.41324 * 298.83790 * 22 21 20 24 24 C 1.53004 * 109.47119 * 119.99972 * 2 1 3 25 25 H 1.09002 * 109.86610 * 179.29877 * 24 2 1 26 26 C 1.54101 * 109.87429 * 300.30266 * 24 2 1 27 27 C 1.54814 * 104.18474 * 121.45583 * 26 24 2 28 28 C 1.54996 * 102.09275 * 20.88013 * 27 26 24 29 29 O 1.43739 * 109.87923 * 58.29109 * 24 2 1 30 30 H 1.09001 * 109.46990 * 300.00203 * 1 2 3 31 31 H 1.08997 * 109.47171 * 60.00389 * 1 2 3 32 32 H 1.08998 * 109.46964 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47209 * 186.68950 * 4 2 1 34 34 H 1.08995 * 109.47164 * 306.68457 * 4 2 1 35 35 H 0.96988 * 120.00136 * 4.83239 * 7 5 4 36 36 H 1.09000 * 109.46956 * 182.05529 * 9 8 7 37 37 H 1.09005 * 109.46850 * 302.04869 * 9 8 7 38 38 H 0.96999 * 119.99449 * 4.84372 * 10 9 8 39 39 H 0.97006 * 119.99126 * 179.97438 * 14 13 11 40 40 H 1.09004 * 109.52423 * 57.02644 * 19 8 7 41 41 H 1.09008 * 109.52270 * 177.21094 * 19 8 7 42 42 H 1.09004 * 109.48423 * 182.40998 * 20 19 8 43 43 H 1.08993 * 109.48232 * 62.37542 * 20 19 8 44 44 H 1.09005 * 109.47788 * 178.85869 * 22 21 20 45 45 H 1.08995 * 109.49422 * 58.82536 * 22 21 20 46 46 H 1.09004 * 109.52563 * 297.70636 * 23 22 21 47 47 H 1.09005 * 109.52681 * 177.51859 * 23 22 21 48 48 H 1.08999 * 110.48517 * 240.12669 * 26 24 2 49 49 H 1.08998 * 110.48903 * 2.78009 * 26 24 2 50 50 H 1.08995 * 110.90777 * 139.07550 * 27 26 24 51 51 H 1.08994 * 110.90900 * 262.64774 * 27 26 24 52 52 H 1.08996 * 110.61988 * 81.47387 * 28 27 26 53 53 H 1.09003 * 110.62183 * 204.47894 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6773 0.0781 -2.4742 6 8 1.1731 1.1747 -2.3552 7 7 1.9134 -0.4255 -3.7018 8 6 1.6596 0.3926 -4.8903 9 6 2.4493 1.6992 -4.7905 10 7 3.8832 1.4015 -4.7511 11 6 4.7874 2.4123 -4.5621 12 1 4.4417 3.4157 -4.3619 13 6 6.1485 2.1473 -4.6281 14 7 7.0177 3.0963 -4.3521 15 14 6.7461 0.4439 -5.1083 16 1 7.0228 0.4095 -6.5670 17 1 7.9896 0.1267 -4.3611 18 1 5.7013 -0.5585 -4.7789 19 6 0.1628 0.7025 -4.9890 20 6 -0.6109 -0.6065 -5.1664 21 8 -0.1362 -1.2847 -6.3313 22 6 1.2462 -1.6421 -6.2756 23 6 2.0945 -0.3746 -6.1428 24 6 2.0400 -0.7213 1.2493 25 1 3.1299 -0.7359 1.2495 26 6 1.5252 -0.0065 2.5137 27 6 0.7285 -1.0982 3.2688 28 6 1.3135 -2.4015 2.6676 29 8 1.5331 -2.0660 1.2785 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1234 -0.8262 -1.1915 34 1 1.5823 -1.7086 -1.3111 35 1 2.2513 -1.3295 -3.7984 36 1 2.2313 2.3226 -5.6576 37 1 2.1629 2.2282 -3.8815 38 1 4.1920 0.4883 -4.8588 39 1 7.9688 2.9110 -4.3978 40 1 -0.1671 1.1998 -4.0769 41 1 -0.0191 1.3520 -5.8453 42 1 -1.6729 -0.3886 -5.2801 43 1 -0.4611 -1.2388 -4.2913 44 1 1.5222 -2.1701 -7.1885 45 1 1.4206 -2.2880 -5.4152 46 1 1.9517 0.2532 -7.0224 47 1 3.1462 -0.6476 -6.0558 48 1 2.3602 0.3445 3.1201 49 1 0.8728 0.8239 2.2437 50 1 0.9170 -1.0457 4.3411 51 1 -0.3379 -1.0168 3.0588 52 1 2.2556 -2.6585 3.1517 53 1 0.5991 -3.2199 2.7568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281282517.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:12 Heat of formation + Delta-G solvation = -145.136243 kcal Electronic energy + Delta-G solvation = -32343.717510 eV Core-core repulsion = 28214.461672 eV Total energy + Delta-G solvation = -4129.255838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.84935 -40.67886 -39.51339 -37.42781 -35.67543 -35.32719 -33.49682 -32.96781 -32.50650 -32.09530 -29.48501 -28.57963 -28.29974 -25.24188 -24.83730 -24.41525 -23.04892 -22.68383 -21.77806 -20.67515 -20.42037 -19.75596 -18.28192 -17.43689 -17.16703 -17.01224 -16.80008 -16.72876 -16.55927 -16.37014 -16.07556 -15.60392 -15.33711 -15.18615 -14.95396 -14.71334 -14.45861 -14.33072 -14.17048 -13.82747 -13.71666 -13.45860 -13.26557 -13.12791 -12.84786 -12.83678 -12.74089 -12.49896 -12.34093 -12.22703 -12.15149 -12.11692 -11.87996 -11.71757 -11.69420 -11.65045 -11.45494 -11.35893 -11.05875 -10.64948 -10.54848 -10.39407 -9.87963 -9.27548 -8.04441 -5.37750 1.30338 1.39588 1.45865 1.78367 2.24391 2.45751 2.95053 2.97700 3.25952 3.44041 3.60730 3.68746 3.74152 3.81803 3.87404 3.94091 4.03375 4.06675 4.09807 4.12333 4.24559 4.35151 4.42432 4.43972 4.53305 4.63289 4.67786 4.71342 4.75847 4.78793 4.82056 4.83243 4.84854 4.87601 4.96263 4.99104 5.03404 5.06432 5.10179 5.11434 5.18218 5.18579 5.26665 5.34425 5.46853 5.66088 5.73862 6.01835 6.18239 6.24029 6.65988 7.05970 7.40292 7.79465 8.04679 9.17783 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008756 B = 0.004130 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.109531 B = 6777.856625 C = 8803.068648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.071 4.071 3 H 0.066 0.934 4 C -0.127 4.127 5 C 0.517 3.483 6 O -0.561 6.561 7 N -0.714 5.714 8 C 0.179 3.821 9 C 0.146 3.854 10 N -0.743 5.743 11 C -0.234 4.234 12 H 0.041 0.959 13 C -0.064 4.064 14 N -0.985 5.985 15 Si 0.962 3.038 16 H -0.279 1.279 17 H -0.295 1.295 18 H -0.244 1.244 19 C -0.156 4.156 20 C 0.073 3.927 21 O -0.393 6.393 22 C 0.065 3.935 23 C -0.154 4.154 24 C 0.082 3.918 25 H 0.063 0.937 26 C -0.155 4.155 27 C -0.147 4.147 28 C 0.039 3.961 29 O -0.386 6.386 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.407 0.593 36 H 0.018 0.982 37 H 0.031 0.969 38 H 0.368 0.632 39 H 0.258 0.742 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.055 0.945 44 H 0.115 0.885 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.078 0.922 50 H 0.094 0.906 51 H 0.077 0.923 52 H 0.065 0.935 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.575 -17.483 9.969 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.090 4.090 3 H 0.084 0.916 4 C -0.167 4.167 5 C 0.305 3.695 6 O -0.440 6.440 7 N -0.366 5.366 8 C 0.093 3.907 9 C 0.019 3.981 10 N -0.390 5.390 11 C -0.366 4.366 12 H 0.059 0.941 13 C -0.255 4.255 14 N -0.636 5.636 15 Si 0.789 3.211 16 H -0.205 1.205 17 H -0.222 1.222 18 H -0.169 1.169 19 C -0.195 4.195 20 C -0.003 4.003 21 O -0.312 6.312 22 C -0.012 4.012 23 C -0.193 4.193 24 C 0.025 3.975 25 H 0.081 0.919 26 C -0.193 4.193 27 C -0.185 4.185 28 C -0.037 4.037 29 O -0.305 6.305 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.244 0.756 36 H 0.036 0.964 37 H 0.049 0.951 38 H 0.204 0.796 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.124 0.876 43 H 0.073 0.927 44 H 0.133 0.867 45 H 0.083 0.917 46 H 0.102 0.898 47 H 0.095 0.905 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.113 0.887 51 H 0.096 0.904 52 H 0.083 0.917 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.026 -16.656 9.733 25.730 hybrid contribution 1.547 -0.029 0.082 1.549 sum -15.479 -16.686 9.815 24.786 Atomic orbital electron populations 1.21701 0.93831 1.01771 1.01642 1.21001 0.97509 0.98244 0.92254 0.91577 1.21669 1.03107 1.00476 0.91429 1.20982 0.76836 0.86486 0.85168 1.90608 1.44220 1.22246 1.86953 1.45969 1.67732 1.17926 1.05021 1.20398 0.94703 0.90374 0.85262 1.21089 0.82928 0.95592 0.98510 1.42522 1.01717 1.05756 1.89048 1.18951 0.87858 0.90337 1.39406 0.94068 1.25575 0.95531 1.02059 1.02359 1.69924 1.01408 1.35044 1.57207 0.85307 0.77728 0.80067 0.78001 1.20494 1.22154 1.16866 1.22453 0.93766 0.99745 1.03502 1.22513 0.98594 0.91235 0.88003 1.87909 1.25578 1.76838 1.40837 1.22694 0.80389 0.94276 1.03836 1.22439 1.01011 0.98928 0.96894 1.22737 0.97296 0.82625 0.94891 0.91905 1.23049 1.01003 0.99504 0.95749 1.23096 1.00505 0.93819 1.01048 1.23754 1.00553 0.98058 0.81314 1.88879 1.85897 1.29404 1.26340 0.92248 0.93394 0.92045 0.89035 0.86926 0.75641 0.96380 0.95115 0.79639 0.93316 0.90266 0.90651 0.87575 0.92665 0.86683 0.91658 0.89823 0.90515 0.90076 0.90307 0.88714 0.90393 0.91686 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.54 71.98 0.61 -2.41 16 2 C -0.07 -1.74 1.82 -10.79 -0.02 -1.76 16 3 H 0.07 1.97 7.80 -2.39 -0.02 1.95 16 4 C -0.13 -3.13 4.95 29.85 0.15 -2.98 16 5 C 0.52 15.70 6.85 87.66 0.60 16.30 16 6 O -0.56 -20.98 10.55 -3.04 -0.03 -21.02 16 7 N -0.71 -19.30 4.10 -422.39 -1.73 -21.03 16 8 C 0.18 5.39 0.33 3.72 0.00 5.40 16 9 C 0.15 6.11 4.96 86.38 0.43 6.53 16 10 N -0.74 -35.46 5.03 -343.45 -1.73 -37.18 16 11 C -0.23 -13.95 10.47 84.04 0.88 -13.07 16 12 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 13 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 14 N -0.99 -64.47 13.97 21.65 0.30 -64.17 16 15 Si 0.96 44.99 28.02 68.60 1.92 46.92 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 18 H -0.24 -9.76 6.14 99.48 0.61 -9.15 16 19 C -0.16 -4.25 4.82 30.68 0.15 -4.10 16 20 C 0.07 1.60 6.68 72.01 0.48 2.08 16 21 O -0.39 -9.05 10.77 -148.98 -1.60 -10.65 16 22 C 0.06 1.27 6.67 72.01 0.48 1.75 16 23 C -0.15 -3.99 4.73 30.68 0.15 -3.85 16 24 C 0.08 1.70 3.14 30.97 0.10 1.80 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 26 C -0.16 -2.59 6.15 31.59 0.19 -2.40 16 27 C -0.15 -1.85 7.16 31.90 0.23 -1.62 16 28 C 0.04 0.55 7.72 72.67 0.56 1.11 16 29 O -0.39 -7.77 10.04 -148.98 -1.50 -9.27 16 30 H 0.06 1.22 6.39 -2.39 -0.02 1.21 16 31 H 0.05 1.30 6.33 -2.39 -0.02 1.28 16 32 H 0.06 1.30 7.66 -2.39 -0.02 1.28 16 33 H 0.09 2.29 8.14 -2.38 -0.02 2.28 16 34 H 0.11 2.29 7.94 -2.39 -0.02 2.27 16 35 H 0.41 8.65 7.41 -92.72 -0.69 7.97 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.03 1.48 6.00 -2.38 -0.01 1.47 16 38 H 0.37 16.09 3.97 -92.71 -0.37 15.72 16 39 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 40 H 0.08 2.45 6.27 -2.38 -0.01 2.44 16 41 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 1.14 7.75 -2.39 -0.02 1.12 16 44 H 0.12 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.07 1.07 7.02 -2.39 -0.02 1.05 16 46 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 47 H 0.08 2.08 6.77 -2.38 -0.02 2.06 16 48 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.08 1.39 6.22 -2.39 -0.01 1.38 16 50 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 53 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.73 394.89 0.85 -74.88 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -0.24 Total: 42.11 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 5.45 Total: -0.59 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -3.16 Total: -122.38 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -3.13 Total: -40.93 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.92 Total: 46.92 kcal Total: -75.73 0.85 -74.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281282517.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.253 kcal (2) G-P(sol) polarization free energy of solvation -75.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds