Wall clock time and date at job start Sat Apr 11 2020 06:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46828 * 2 1 4 4 C 1.53006 * 109.46811 * 240.00037 * 2 1 3 5 5 C 1.50698 * 109.47184 * 65.00358 * 4 2 1 6 6 O 1.21282 * 120.00025 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00035 * 180.02562 * 5 4 2 8 8 C 1.46924 * 120.62981 * 359.71541 * 7 5 4 9 9 C 1.53618 * 108.54299 * 126.37305 * 8 7 5 10 10 C 1.53038 * 109.24352 * 54.85410 * 9 8 7 11 11 O 1.42897 * 109.44848 * 58.52700 * 10 9 8 12 12 C 1.53002 * 109.46114 * 178.48949 * 10 9 8 13 13 N 1.46505 * 109.47299 * 305.07268 * 12 10 9 14 14 C 1.36936 * 120.00074 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00059 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00144 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99748 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00171 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46853 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46758 * 119.99642 * 18 16 14 21 21 H 1.48491 * 109.47074 * 239.99805 * 18 16 14 22 22 C 1.53042 * 109.53856 * 298.51127 * 10 9 8 23 23 C 1.46929 * 120.63006 * 179.97438 * 7 5 4 24 24 C 1.52999 * 109.47251 * 120.00232 * 2 1 3 25 25 H 1.09000 * 109.82574 * 60.56347 * 24 2 1 26 26 C 1.54383 * 109.82632 * 299.58584 * 24 2 1 27 27 C 1.55312 * 102.24922 * 219.12726 * 26 24 2 28 28 C 1.54950 * 100.94092 * 34.13648 * 27 26 24 29 29 O 1.43232 * 109.83115 * 181.45266 * 24 2 1 30 30 H 1.09002 * 109.46911 * 299.99883 * 1 2 3 31 31 H 1.09009 * 109.47170 * 60.00031 * 1 2 3 32 32 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47002 * 184.99763 * 4 2 1 34 34 H 1.08993 * 109.46955 * 305.00200 * 4 2 1 35 35 H 1.08999 * 109.58555 * 246.20421 * 8 7 5 36 36 H 1.08996 * 109.58826 * 6.62389 * 8 7 5 37 37 H 1.09004 * 109.63577 * 294.86133 * 9 8 7 38 38 H 1.09002 * 109.43464 * 174.72255 * 9 8 7 39 39 H 0.96701 * 114.00070 * 59.93607 * 11 10 9 40 40 H 1.09005 * 109.46796 * 65.06453 * 12 10 9 41 41 H 1.09001 * 109.47501 * 185.06442 * 12 10 9 42 42 H 0.96998 * 119.99535 * 359.97438 * 13 12 10 43 43 H 0.96993 * 120.00292 * 180.02562 * 17 16 14 44 44 H 1.08995 * 109.49479 * 301.41314 * 22 10 9 45 45 H 1.08994 * 109.49426 * 181.31702 * 22 10 9 46 46 H 1.09003 * 109.58761 * 353.36851 * 23 7 5 47 47 H 1.08991 * 109.58780 * 113.65362 * 23 7 5 48 48 H 1.08999 * 110.85079 * 337.31775 * 26 24 2 49 49 H 1.08998 * 110.84584 * 100.94155 * 26 24 2 50 50 H 1.08998 * 111.12566 * 276.21446 * 27 26 24 51 51 H 1.08999 * 111.15879 * 152.07018 * 27 26 24 52 52 H 1.08995 * 110.30624 * 204.63805 * 28 27 26 53 53 H 1.09005 * 110.30617 * 82.46776 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0110 1.0870 -2.3633 7 7 1.9844 -0.3919 -3.7002 8 6 2.7522 -1.6351 -3.8533 9 6 1.9961 -2.5606 -4.8185 10 6 1.7363 -1.8171 -6.1307 11 8 2.9810 -1.4017 -6.6966 12 6 1.0165 -2.7470 -7.1096 13 7 1.7951 -3.9766 -7.2774 14 6 1.3447 -4.9636 -8.1130 15 1 0.4152 -4.8357 -8.6479 16 6 2.0827 -6.1284 -8.2724 17 7 3.2156 -6.2840 -7.6208 18 14 1.4678 -7.4751 -9.4117 19 1 0.1797 -7.0578 -10.0213 20 1 2.4684 -7.7119 -10.4833 21 1 1.2672 -8.7257 -8.6367 22 6 0.8644 -0.5891 -5.8592 23 6 1.6025 0.3556 -4.9061 24 6 2.0400 -0.7213 1.2492 25 1 1.6881 -1.7529 1.2500 26 6 1.5385 0.0061 2.5152 27 6 2.7719 -0.0804 3.4552 28 6 3.9300 0.0216 2.4309 29 8 3.4719 -0.6963 1.2742 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1263 -0.7995 -1.2057 34 1 1.6053 -1.7197 -1.2952 35 1 3.7385 -1.4080 -4.2579 36 1 2.8561 -2.1222 -2.8838 37 1 1.0459 -2.8563 -4.3736 38 1 2.5976 -3.4480 -5.0161 39 1 3.5855 -2.1299 -6.8949 40 1 0.0294 -2.9927 -6.7181 41 1 0.9115 -2.2490 -8.0734 42 1 2.6301 -4.0913 -6.7972 43 1 3.7315 -7.0978 -7.7325 44 1 -0.0750 -0.9033 -5.4045 45 1 0.6605 -0.0732 -6.7974 46 1 0.9474 1.1824 -4.6314 47 1 2.4965 0.7442 -5.3936 48 1 1.2915 1.0444 2.2940 49 1 0.6837 -0.5135 2.9481 50 1 2.7973 -1.0335 3.9834 51 1 2.7921 0.7546 4.1555 52 1 4.8313 -0.4422 2.8317 53 1 4.1206 1.0647 2.1780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281642882.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:19 Heat of formation + Delta-G solvation = -153.496923 kcal Electronic energy + Delta-G solvation = -31106.600442 eV Core-core repulsion = 26976.982057 eV Total energy + Delta-G solvation = -4129.618385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.57173 -40.57226 -39.67317 -36.85710 -35.80570 -35.68356 -33.52479 -33.04989 -32.58032 -31.74683 -29.75177 -28.64050 -27.85167 -25.60826 -24.50346 -24.31519 -23.21720 -22.49263 -21.56509 -20.90164 -19.87685 -19.44394 -18.30260 -17.73965 -17.30994 -17.00469 -16.76252 -16.63632 -16.38804 -15.92747 -15.73208 -15.51546 -15.26822 -14.99217 -14.74909 -14.58911 -14.38979 -14.26356 -14.16870 -13.71710 -13.51631 -13.40514 -13.21072 -13.02301 -12.91673 -12.80913 -12.72702 -12.59524 -12.28204 -12.24051 -12.18889 -12.10595 -12.04207 -11.98350 -11.80642 -11.63387 -11.59288 -11.29660 -10.98630 -10.80578 -10.65073 -10.35046 -9.60980 -9.02304 -7.97108 -5.25227 1.47549 1.48578 1.57791 1.63850 2.01929 2.54638 2.93217 3.25761 3.40325 3.45302 3.62001 3.65705 3.74858 3.81196 3.90500 4.00233 4.03743 4.10257 4.13954 4.24019 4.28625 4.33907 4.41491 4.45514 4.54634 4.59066 4.67106 4.69733 4.75117 4.76828 4.82182 4.84112 4.87469 4.89466 4.93255 4.96743 4.98735 5.05882 5.07840 5.13060 5.17761 5.25889 5.33170 5.38789 5.45129 5.49500 5.57180 6.15065 6.25273 6.43909 6.74861 7.18430 7.33264 8.03806 8.29748 9.25741 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.002296 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.070610 B =12191.583548 C =13094.706183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 H 0.061 0.939 4 C -0.129 4.129 5 C 0.513 3.487 6 O -0.576 6.576 7 N -0.608 5.608 8 C 0.118 3.882 9 C -0.149 4.149 10 C 0.138 3.862 11 O -0.563 6.563 12 C 0.128 3.872 13 N -0.736 5.736 14 C -0.246 4.246 15 H 0.070 0.930 16 C -0.068 4.068 17 N -0.963 5.963 18 Si 0.969 3.031 19 H -0.271 1.271 20 H -0.293 1.293 21 H -0.292 1.292 22 C -0.110 4.110 23 C 0.123 3.877 24 C 0.083 3.917 25 H 0.087 0.913 26 C -0.148 4.148 27 C -0.152 4.152 28 C 0.040 3.960 29 O -0.400 6.400 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.382 0.618 40 H 0.026 0.974 41 H 0.020 0.980 42 H 0.378 0.622 43 H 0.252 0.748 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.096 0.904 52 H 0.093 0.907 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 13.752 21.999 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 H 0.079 0.921 4 C -0.169 4.169 5 C 0.303 3.697 6 O -0.457 6.457 7 N -0.341 5.341 8 C -0.004 4.004 9 C -0.188 4.188 10 C 0.097 3.903 11 O -0.370 6.370 12 C 0.001 3.999 13 N -0.381 5.381 14 C -0.378 4.378 15 H 0.088 0.912 16 C -0.261 4.261 17 N -0.613 5.613 18 Si 0.798 3.202 19 H -0.195 1.195 20 H -0.221 1.221 21 H -0.219 1.219 22 C -0.148 4.148 23 C 0.000 4.000 24 C 0.025 3.975 25 H 0.105 0.895 26 C -0.185 4.185 27 C -0.189 4.189 28 C -0.036 4.036 29 O -0.320 6.320 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.231 0.769 40 H 0.044 0.956 41 H 0.038 0.962 42 H 0.212 0.788 43 H 0.061 0.939 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.096 0.904 49 H 0.114 0.886 50 H 0.102 0.898 51 H 0.115 0.885 52 H 0.111 0.889 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.226 14.719 21.842 26.432 hybrid contribution 0.271 -1.493 -0.926 1.777 sum -1.955 13.227 20.916 24.824 Atomic orbital electron populations 1.21868 0.93783 1.02140 1.02678 1.21194 0.96584 0.99007 0.92821 0.92073 1.21730 1.03808 1.00183 0.91147 1.21166 0.78131 0.85303 0.85091 1.90610 1.42011 1.26371 1.86698 1.48241 1.54867 1.25120 1.05845 1.21837 0.94526 0.83293 1.00789 1.22487 1.01963 0.98534 0.95774 1.21229 0.84686 0.93389 0.91031 1.86377 1.27951 1.38185 1.84453 1.21445 0.94592 0.87074 0.96754 1.42438 1.25949 1.15925 1.53776 1.19576 1.04248 0.95875 1.18098 0.91179 1.25457 0.97655 1.00562 1.02392 1.69763 1.16159 1.28094 1.47287 0.85144 0.77543 0.79263 0.78211 1.19522 1.22069 1.21931 1.21793 0.97645 0.94976 1.00419 1.21388 0.99855 0.94295 0.84452 1.22874 0.80549 0.99690 0.94341 0.89538 1.23188 0.99376 1.01753 0.94231 1.23275 0.93492 1.04093 0.98050 1.23544 0.98290 0.96617 0.85136 1.88404 1.20939 1.76167 1.46507 0.91407 0.92767 0.92139 0.87898 0.87608 0.90486 0.87695 0.90954 0.90795 0.76929 0.95594 0.96195 0.78795 0.93866 0.90049 0.89525 0.89701 0.91128 0.90424 0.88569 0.89766 0.88518 0.88917 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.70 71.98 0.63 -2.08 16 2 C -0.08 -1.46 1.68 -10.79 -0.02 -1.48 16 3 H 0.06 1.40 7.95 -2.39 -0.02 1.38 16 4 C -0.13 -2.62 3.46 29.85 0.10 -2.52 16 5 C 0.51 13.39 7.42 87.66 0.65 14.04 16 6 O -0.58 -18.25 13.38 -3.04 -0.04 -18.29 16 7 N -0.61 -15.45 2.97 -818.18 -2.43 -17.88 16 8 C 0.12 2.78 6.13 86.51 0.53 3.31 16 9 C -0.15 -4.25 4.89 30.81 0.15 -4.10 16 10 C 0.14 4.25 0.71 -10.77 -0.01 4.24 16 11 O -0.56 -18.00 11.70 -148.98 -1.74 -19.74 16 12 C 0.13 4.96 5.43 86.38 0.47 5.43 16 13 N -0.74 -34.95 5.07 -343.43 -1.74 -36.69 16 14 C -0.25 -13.30 9.99 84.03 0.84 -12.46 16 15 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 16 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 17 N -0.96 -56.01 13.06 21.65 0.28 -55.72 16 18 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 C -0.11 -2.94 5.11 30.66 0.16 -2.78 16 23 C 0.12 3.22 6.18 86.35 0.53 3.76 16 24 C 0.08 1.31 3.08 31.06 0.10 1.41 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 C -0.15 -1.69 5.46 31.86 0.17 -1.52 16 27 C -0.15 -1.47 7.16 32.06 0.23 -1.24 16 28 C 0.04 0.55 7.78 72.65 0.57 1.11 16 29 O -0.40 -7.65 10.34 -148.98 -1.54 -9.19 16 30 H 0.07 1.02 7.06 -2.39 -0.02 1.01 16 31 H 0.05 1.31 5.95 -2.38 -0.01 1.29 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.10 2.05 7.39 -2.39 -0.02 2.03 16 34 H 0.11 1.86 7.70 -2.39 -0.02 1.84 16 35 H 0.08 1.84 7.81 -2.39 -0.02 1.82 16 36 H 0.10 2.03 5.93 -2.39 -0.01 2.02 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.07 2.42 6.53 -2.39 -0.02 2.41 16 39 H 0.38 12.32 8.19 -74.06 -0.61 11.72 16 40 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.38 18.32 5.55 -92.71 -0.51 17.80 16 43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.08 2.30 7.01 -2.39 -0.02 2.28 16 47 H 0.07 1.91 7.82 -2.39 -0.02 1.89 16 48 H 0.08 0.93 7.57 -2.39 -0.02 0.91 16 49 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -65.98 402.36 0.17 -65.82 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -0.21 Total: 42.79 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 5.56 Total: 1.82 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -3.88 Total: -110.29 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -3.32 Total: -47.22 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.98 0.17 -65.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281642882.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.682 kcal (2) G-P(sol) polarization free energy of solvation -65.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds