Wall clock time and date at job start Sat Apr 11 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47340 * 2 1 4 4 C 1.53000 * 109.47225 * 239.99564 * 2 1 3 5 5 C 1.50703 * 109.46665 * 65.00223 * 4 2 1 6 6 O 1.21276 * 120.00313 * 359.97438 * 5 4 2 7 7 N 1.34787 * 119.99759 * 179.97438 * 5 4 2 8 8 C 1.46924 * 120.63033 * 359.72119 * 7 5 4 9 9 C 1.53187 * 108.77642 * 126.66473 * 8 7 5 10 10 C 1.53041 * 109.31211 * 54.63373 * 9 8 7 11 11 O 1.42902 * 109.46034 * 58.65616 * 10 9 8 12 12 C 1.52994 * 109.46090 * 178.61149 * 10 9 8 13 13 N 1.46501 * 109.47543 * 305.06920 * 12 10 9 14 14 C 1.36933 * 120.00446 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99794 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00384 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00163 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99830 * 359.97438 * 16 14 13 19 19 H 1.48507 * 109.46958 * 90.00535 * 18 16 14 20 20 H 1.48498 * 109.47408 * 210.00475 * 18 16 14 21 21 H 1.48502 * 109.47608 * 330.00412 * 18 16 14 22 22 C 1.53038 * 109.53768 * 298.63806 * 10 9 8 23 23 C 1.46926 * 120.62918 * 180.02562 * 7 5 4 24 24 C 1.53002 * 109.47004 * 119.99996 * 2 1 3 25 25 H 1.09001 * 110.27479 * 180.63609 * 24 2 1 26 26 C 1.54952 * 110.30786 * 302.83404 * 24 2 1 27 27 C 1.55302 * 100.93852 * 155.35857 * 26 24 2 28 28 C 1.54377 * 102.25665 * 325.86597 * 27 26 24 29 29 O 1.43236 * 107.58644 * 21.35692 * 28 27 26 30 30 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46889 * 300.00196 * 1 2 3 32 32 H 1.09002 * 109.46798 * 59.99961 * 1 2 3 33 33 H 1.08998 * 109.47231 * 305.00418 * 4 2 1 34 34 H 1.09001 * 109.47359 * 185.00291 * 4 2 1 35 35 H 1.09003 * 109.58516 * 246.45674 * 8 7 5 36 36 H 1.09002 * 109.58479 * 6.87832 * 8 7 5 37 37 H 1.08999 * 109.49975 * 294.68379 * 9 8 7 38 38 H 1.09004 * 109.52338 * 174.59879 * 9 8 7 39 39 H 0.96705 * 114.00313 * 59.92735 * 11 10 9 40 40 H 1.09004 * 109.46773 * 65.07016 * 12 10 9 41 41 H 1.09002 * 109.47279 * 185.06724 * 12 10 9 42 42 H 0.96997 * 119.99638 * 0.02562 * 13 12 10 43 43 H 0.97002 * 120.00158 * 179.97438 * 17 16 14 44 44 H 1.08999 * 109.49677 * 301.40907 * 22 10 9 45 45 H 1.09001 * 109.52131 * 181.33314 * 22 10 9 46 46 H 1.09002 * 109.58798 * 353.11768 * 23 7 5 47 47 H 1.08996 * 109.58371 * 113.54749 * 23 7 5 48 48 H 1.09001 * 111.12456 * 273.27734 * 26 24 2 49 49 H 1.08997 * 111.12375 * 37.43822 * 26 24 2 50 50 H 1.09003 * 110.84362 * 207.67021 * 27 26 24 51 51 H 1.09002 * 111.02161 * 84.13728 * 27 26 24 52 52 H 1.08999 * 109.83045 * 261.84297 * 28 27 26 53 53 H 1.09002 * 109.82774 * 140.87347 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 8 1.0110 1.0868 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 2.7542 -1.6342 -3.8531 9 6 2.0095 -2.5587 -4.8212 10 6 1.7501 -1.8146 -6.1331 11 8 2.9943 -1.3930 -6.6954 12 6 1.0370 -2.7462 -7.1151 13 7 1.8214 -3.9722 -7.2826 14 6 1.3770 -4.9604 -8.1199 15 1 0.4484 -4.8359 -8.6571 16 6 2.1199 -6.1222 -8.2781 17 7 1.6929 -7.0719 -9.0833 18 14 3.7263 -6.3373 -7.3494 19 1 3.4580 -6.9831 -6.0393 20 1 4.6464 -7.1911 -8.1429 21 1 4.3517 -5.0088 -7.1275 22 6 0.8722 -0.5906 -5.8623 23 6 1.6045 0.3565 -4.9060 24 6 2.0400 -0.7213 1.2493 25 1 3.1299 -0.7191 1.2682 26 6 1.4764 -0.0486 2.5263 27 6 1.5447 -1.2276 3.5350 28 6 1.2499 -2.4465 2.6348 29 8 1.5434 -2.0686 1.2847 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6054 -1.7199 -1.2951 34 1 3.1264 -0.7996 -1.2055 35 1 3.7422 -1.4058 -4.2529 36 1 2.8541 -2.1237 -2.8843 37 1 1.0595 -2.8590 -4.3793 38 1 2.6149 -3.4435 -5.0184 39 1 3.6026 -2.1184 -6.8931 40 1 0.0498 -2.9967 -6.7267 41 1 0.9325 -2.2473 -8.0786 42 1 2.6551 -4.0842 -6.7998 43 1 2.2123 -7.8836 -9.1941 44 1 -0.0671 -0.9095 -5.4106 45 1 0.6680 -0.0742 -6.8002 46 1 0.9457 1.1805 -4.6320 47 1 2.4989 0.7469 -5.3915 48 1 2.1092 0.7792 2.8462 49 1 0.4483 0.2806 2.3758 50 1 0.7826 -1.1220 4.3071 51 1 2.5369 -1.3047 3.9797 52 1 0.1994 -2.7244 2.7210 53 1 1.8807 -3.2851 2.9296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281642884.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:27 Heat of formation + Delta-G solvation = -146.973535 kcal Electronic energy + Delta-G solvation = -31307.377588 eV Core-core repulsion = 27178.042078 eV Total energy + Delta-G solvation = -4129.335509 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.58838 -40.60364 -39.72397 -36.93122 -35.88592 -35.60043 -33.67218 -33.05490 -32.75381 -31.94135 -29.81129 -28.77468 -28.07169 -25.48366 -24.54905 -24.41493 -23.12645 -22.46549 -21.58697 -20.70427 -20.00215 -19.82693 -18.36650 -17.70516 -17.34469 -16.96202 -16.74022 -16.59999 -16.37535 -16.09672 -15.73772 -15.52695 -15.30729 -15.02836 -14.85485 -14.73464 -14.54075 -14.45561 -14.22687 -13.81864 -13.55669 -13.49384 -13.30841 -13.13846 -12.83643 -12.77539 -12.64751 -12.52224 -12.30880 -12.28917 -12.22462 -12.21193 -12.10399 -11.88463 -11.77927 -11.67265 -11.40234 -11.33890 -11.01485 -10.83169 -10.62615 -10.34889 -9.61138 -9.35145 -8.03490 -5.39464 1.36265 1.43589 1.50428 1.64775 2.02147 2.48327 2.92516 3.19603 3.31967 3.43474 3.45134 3.64315 3.71664 3.76298 3.83777 3.95425 4.02952 4.04592 4.10823 4.14842 4.30145 4.33715 4.37407 4.44953 4.49283 4.56585 4.64203 4.72493 4.74613 4.78448 4.82108 4.84366 4.85067 4.87313 4.93560 4.96726 4.99875 5.03589 5.06902 5.10784 5.15514 5.26375 5.30095 5.34026 5.49044 5.57907 5.72950 6.17423 6.18081 6.44352 6.71599 7.05086 7.19502 7.76644 7.98133 9.17946 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.002658 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.342472 B =10530.873547 C =11907.003771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 H 0.085 0.915 4 C -0.128 4.128 5 C 0.512 3.488 6 O -0.575 6.575 7 N -0.609 5.609 8 C 0.115 3.885 9 C -0.157 4.157 10 C 0.137 3.863 11 O -0.559 6.559 12 C 0.131 3.869 13 N -0.749 5.749 14 C -0.239 4.239 15 H 0.050 0.950 16 C -0.065 4.065 17 N -0.985 5.985 18 Si 0.957 3.043 19 H -0.275 1.275 20 H -0.299 1.299 21 H -0.238 1.238 22 C -0.112 4.112 23 C 0.123 3.877 24 C 0.083 3.917 25 H 0.081 0.919 26 C -0.156 4.156 27 C -0.150 4.150 28 C 0.042 3.958 29 O -0.398 6.398 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.382 0.618 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.368 0.632 43 H 0.258 0.742 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.091 0.909 51 H 0.085 0.915 52 H 0.066 0.934 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 16.301 26.924 31.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 H 0.103 0.897 4 C -0.168 4.168 5 C 0.303 3.697 6 O -0.456 6.456 7 N -0.342 5.342 8 C -0.007 4.007 9 C -0.196 4.196 10 C 0.096 3.904 11 O -0.366 6.366 12 C 0.004 3.996 13 N -0.396 5.396 14 C -0.370 4.370 15 H 0.068 0.932 16 C -0.257 4.257 17 N -0.635 5.635 18 Si 0.783 3.217 19 H -0.201 1.201 20 H -0.226 1.226 21 H -0.162 1.162 22 C -0.150 4.150 23 C 0.001 3.999 24 C 0.026 3.974 25 H 0.099 0.901 26 C -0.193 4.193 27 C -0.188 4.188 28 C -0.034 4.034 29 O -0.318 6.318 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.230 0.770 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.203 0.797 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.110 0.890 51 H 0.104 0.896 52 H 0.084 0.916 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.495 17.213 26.722 31.977 hybrid contribution 0.676 -1.383 -0.312 1.570 sum 4.171 15.831 26.410 31.072 Atomic orbital electron populations 1.21869 0.95098 1.01290 1.01997 1.20990 0.96668 0.98942 0.92144 0.89659 1.21726 1.03867 1.00182 0.90998 1.21178 0.78186 0.85247 0.85126 1.90622 1.41815 1.26466 1.86679 1.48234 1.54963 1.25155 1.05809 1.21803 0.94726 0.83320 1.00850 1.22511 1.02478 0.98741 0.95849 1.21243 0.84811 0.93416 0.90964 1.86425 1.27524 1.38058 1.84572 1.21437 0.94578 0.86356 0.97197 1.42545 1.25725 1.17343 1.54009 1.18964 1.04712 0.95479 1.17853 0.93211 1.25611 1.03081 0.96087 1.00892 1.69905 1.41723 1.08972 1.42917 0.85393 0.79239 0.79004 0.78061 1.20083 1.22569 1.16236 1.21812 0.97622 0.95055 1.00561 1.21403 0.99976 0.94174 0.84359 1.23102 0.97982 0.81620 0.94664 0.90143 1.23422 1.03063 0.98875 0.93936 1.23102 1.03805 0.93452 0.98400 1.23233 1.00793 0.97862 0.81497 1.88395 1.85691 1.30232 1.27483 0.93387 0.91835 0.93038 0.88173 0.87022 0.89764 0.87481 0.90771 0.90342 0.76954 0.95250 0.95712 0.79719 0.93281 0.90269 0.89521 0.89830 0.90692 0.88598 0.90018 0.89013 0.89648 0.91570 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.47 71.98 0.61 -2.27 16 2 C -0.07 -1.17 2.01 -10.79 -0.02 -1.19 16 3 H 0.09 1.50 7.96 -2.39 -0.02 1.48 16 4 C -0.13 -2.25 3.33 29.85 0.10 -2.15 16 5 C 0.51 12.01 7.42 87.66 0.65 12.66 16 6 O -0.58 -16.95 13.38 -3.02 -0.04 -16.99 16 7 N -0.61 -13.61 2.97 -818.83 -2.43 -16.04 16 8 C 0.12 2.24 6.10 86.36 0.53 2.76 16 9 C -0.16 -3.87 4.88 30.67 0.15 -3.72 16 10 C 0.14 3.80 0.71 -10.77 -0.01 3.79 16 11 O -0.56 -15.43 11.70 -148.98 -1.74 -17.17 16 12 C 0.13 4.82 5.43 86.38 0.47 5.29 16 13 N -0.75 -32.74 4.87 -343.46 -1.67 -34.41 16 14 C -0.24 -13.39 10.47 84.03 0.88 -12.51 16 15 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 16 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 17 N -0.99 -62.58 13.97 21.65 0.30 -62.27 16 18 Si 0.96 42.78 27.73 68.60 1.90 44.68 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.24 -8.96 6.52 99.48 0.65 -8.32 16 22 C -0.11 -2.78 5.11 30.68 0.16 -2.63 16 23 C 0.12 2.93 6.19 86.37 0.53 3.46 16 24 C 0.08 1.16 3.19 31.26 0.10 1.26 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 C -0.16 -1.63 6.45 32.05 0.21 -1.42 16 27 C -0.15 -1.31 7.02 31.85 0.22 -1.09 16 28 C 0.04 0.55 7.79 72.45 0.56 1.11 16 29 O -0.40 -7.05 9.90 -148.98 -1.47 -8.53 16 30 H 0.05 1.01 7.69 -2.39 -0.02 0.99 16 31 H 0.06 1.07 6.05 -2.39 -0.01 1.05 16 32 H 0.05 1.28 5.95 -2.39 -0.01 1.26 16 33 H 0.10 1.83 7.47 -2.39 -0.02 1.81 16 34 H 0.11 1.48 7.94 -2.39 -0.02 1.46 16 35 H 0.08 1.53 7.81 -2.39 -0.02 1.51 16 36 H 0.11 1.62 5.94 -2.39 -0.01 1.61 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 2.02 6.53 -2.38 -0.02 2.01 16 39 H 0.38 9.90 8.19 -74.05 -0.61 9.30 16 40 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.37 14.53 3.41 -92.71 -0.32 14.21 16 43 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 44 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.08 2.10 7.01 -2.39 -0.02 2.08 16 47 H 0.07 1.78 7.81 -2.39 -0.02 1.76 16 48 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.08 0.94 5.74 -2.39 -0.01 0.93 16 50 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 52 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 53 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -71.86 396.75 0.38 -71.48 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: -0.07 Total: 39.20 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 5.61 Total: 0.06 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -3.80 Total: -112.73 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -3.26 Total: -42.69 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.90 Total: 44.68 kcal Total: -71.86 0.38 -71.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281642884.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.496 kcal (2) G-P(sol) polarization free energy of solvation -71.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds