Wall clock time and date at job start Sat Apr 11 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47111 * 2 1 4 4 C 1.52999 * 109.47590 * 120.00336 * 2 1 3 5 5 N 1.46501 * 109.46808 * 295.00271 * 4 2 1 6 6 C 1.46502 * 119.99907 * 269.99428 * 5 4 2 7 7 C 1.34781 * 120.00196 * 89.99663 * 5 4 2 8 8 O 1.21344 * 120.00100 * 3.76680 * 7 5 4 9 9 C 1.49449 * 120.00070 * 183.76314 * 7 5 4 10 10 O 1.21357 * 119.99717 * 354.14090 * 9 7 5 11 11 N 1.34773 * 120.00124 * 174.14302 * 9 7 5 12 12 C 1.47016 * 125.64774 * 359.95648 * 11 9 7 13 13 C 1.54329 * 107.27340 * 181.09845 * 12 11 9 14 14 C 1.55153 * 102.93832 * 22.19398 * 13 12 11 15 15 O 1.42898 * 111.03925 * 82.59123 * 14 13 12 16 16 C 1.50702 * 111.00264 * 206.42525 * 14 13 12 17 17 H 1.08008 * 119.99590 * 353.65515 * 16 14 13 18 18 C 1.37875 * 120.00173 * 173.37008 * 16 14 13 19 19 N 1.31507 * 119.99932 * 0.28515 * 18 16 14 20 20 Si 1.86809 * 119.99958 * 180.27476 * 18 16 14 21 21 H 1.48493 * 109.46918 * 60.00587 * 20 18 16 22 22 H 1.48498 * 109.46680 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46906 * 300.00505 * 20 18 16 24 24 C 1.47420 * 125.65032 * 180.02562 * 11 9 7 25 25 C 1.53004 * 109.47308 * 240.00481 * 2 1 3 26 26 C 1.53001 * 109.46766 * 299.99762 * 25 2 1 27 27 C 1.52991 * 109.47355 * 59.99533 * 25 2 1 28 28 C 1.52999 * 109.47308 * 180.02562 * 25 2 1 29 29 H 1.09005 * 109.46851 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46561 * 299.99684 * 1 2 3 31 31 H 1.09000 * 109.46926 * 59.99678 * 1 2 3 32 32 H 1.09001 * 109.47674 * 175.00469 * 4 2 1 33 33 H 1.09001 * 109.47189 * 54.99879 * 4 2 1 34 34 H 1.08996 * 109.47235 * 263.99339 * 6 5 4 35 35 H 1.08998 * 109.47051 * 23.99405 * 6 5 4 36 36 H 1.09004 * 109.47006 * 143.99471 * 6 5 4 37 37 H 1.09003 * 109.88625 * 300.51214 * 12 11 9 38 38 H 1.09001 * 109.88490 * 61.67800 * 12 11 9 39 39 H 1.09002 * 110.71678 * 263.83213 * 13 12 11 40 40 H 1.08999 * 110.71963 * 140.55409 * 13 12 11 41 41 H 0.96705 * 113.99584 * 183.20117 * 15 14 13 42 42 H 0.97007 * 120.00057 * 180.02562 * 19 18 16 43 43 H 1.09010 * 110.36911 * 36.99267 * 24 11 9 44 44 H 1.09004 * 110.36918 * 274.67726 * 24 11 9 45 45 H 1.08999 * 109.47042 * 59.99789 * 26 25 2 46 46 H 1.09000 * 109.46835 * 180.02562 * 26 25 2 47 47 H 1.09000 * 109.47462 * 300.00155 * 26 25 2 48 48 H 1.09005 * 109.46837 * 60.00075 * 27 25 2 49 49 H 1.09001 * 109.47777 * 180.02562 * 27 25 2 50 50 H 1.09006 * 109.47434 * 300.00575 * 27 25 2 51 51 H 1.08996 * 109.47361 * 59.99620 * 28 25 2 52 52 H 1.09000 * 109.47299 * 179.97438 * 28 25 2 53 53 H 1.08999 * 109.47111 * 299.99519 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 0.0352 2.4423 6 6 2.5428 1.0695 2.9751 7 6 0.4769 -0.2203 3.0499 8 8 -0.2293 -1.1225 2.6501 9 6 0.0429 0.6075 4.2161 10 8 0.7938 1.4387 4.6830 11 7 -1.1822 0.4309 4.7492 12 6 -2.1879 -0.5352 4.2840 13 6 -3.4373 -0.3601 5.1729 14 6 -3.2728 1.0812 5.7232 15 8 -3.7430 2.0469 4.7806 16 6 -3.9748 1.2372 7.0475 17 1 -4.5845 0.4335 7.4334 18 6 -3.8341 2.4034 7.7693 19 7 -3.0918 3.3820 7.2994 20 14 -4.6981 2.5937 9.4146 21 1 -4.2280 1.5367 10.3457 22 1 -4.3887 3.9295 9.9846 23 1 -6.1649 2.4662 9.2210 24 6 -1.7363 1.1755 5.8945 25 6 2.0400 -0.7212 -1.2493 26 6 1.5301 -2.1637 -1.2493 27 6 1.5300 0.0000 -2.4985 28 6 3.5700 -0.7217 -1.2490 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.1264 -0.7994 1.2055 33 1 1.6055 -1.7199 1.2951 34 1 3.1499 0.6487 3.7766 35 1 3.1930 1.4341 2.1799 36 1 1.9478 1.8953 3.3653 37 1 -2.4423 -0.3335 3.2434 38 1 -1.8015 -1.5495 4.3833 39 1 -3.4366 -1.0858 5.9862 40 1 -4.3477 -0.4449 4.5796 41 1 -3.6155 2.9639 5.0602 42 1 -2.9925 4.2024 7.8074 43 1 -1.4141 2.2164 5.8621 44 1 -1.4302 0.7120 6.8324 45 1 0.4401 -2.1637 -1.2493 46 1 1.8938 -2.6776 -2.1391 47 1 1.8934 -2.6776 -0.3594 48 1 1.8933 1.0278 -2.4984 49 1 1.8930 -0.5139 -3.3885 50 1 0.4400 0.0001 -2.4985 51 1 3.9330 -1.2358 -0.3591 52 1 3.9334 -1.2359 -2.1388 53 1 3.9337 0.3058 -1.2488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329775810.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:49 Heat of formation + Delta-G solvation = -133.458405 kcal Electronic energy + Delta-G solvation = -32084.774890 eV Core-core repulsion = 27956.025441 eV Total energy + Delta-G solvation = -4128.749449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.03737 -40.46081 -39.29677 -38.80198 -36.78755 -35.79444 -34.24684 -32.13817 -31.94902 -29.75692 -29.36390 -28.19690 -28.04191 -27.56313 -26.79489 -25.03685 -23.78041 -22.34230 -21.50603 -20.26905 -19.15766 -19.10150 -18.30606 -18.07483 -17.47474 -17.12320 -16.94419 -16.43535 -16.23823 -15.69354 -15.53325 -15.34857 -14.93600 -14.75348 -14.69371 -14.55796 -14.38698 -14.05684 -13.99232 -13.79520 -13.56018 -13.44905 -13.31082 -12.99815 -12.81809 -12.80629 -12.74063 -12.67237 -12.60649 -12.35349 -12.30395 -12.22866 -12.11205 -12.06133 -11.92100 -11.49500 -11.28462 -11.23875 -11.19000 -10.68660 -10.43568 -10.26016 -9.83913 -9.51269 -8.25616 -6.42893 0.38691 1.27942 1.44930 1.45849 1.53483 2.13538 2.35457 2.44298 3.00134 3.16927 3.75959 3.77486 3.79952 3.82916 4.05063 4.12516 4.15020 4.28703 4.31156 4.34269 4.45768 4.59402 4.61248 4.65364 4.68691 4.73226 4.77568 4.85648 4.87881 4.93692 4.95080 5.01386 5.03057 5.05884 5.11214 5.12840 5.15052 5.18542 5.25568 5.26525 5.32743 5.41406 5.42973 5.49233 5.57048 5.62372 5.73587 5.96053 6.03824 6.33680 6.60393 6.67883 6.95854 7.26070 7.33978 8.79591 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024346 B = 0.002637 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.825151 B =10614.945367 C =10993.355385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.073 0.927 4 C 0.112 3.888 5 N -0.581 5.581 6 C 0.066 3.934 7 C 0.511 3.489 8 O -0.526 6.526 9 C 0.497 3.503 10 O -0.550 6.550 11 N -0.584 5.584 12 C 0.122 3.878 13 C -0.115 4.115 14 C 0.234 3.766 15 O -0.588 6.588 16 C -0.557 4.557 17 H 0.069 0.931 18 C 0.028 3.972 19 N -0.914 5.914 20 Si 0.965 3.035 21 H -0.270 1.270 22 H -0.285 1.285 23 H -0.271 1.271 24 C 0.108 3.892 25 C -0.056 4.056 26 C -0.146 4.146 27 C -0.142 4.142 28 C -0.143 4.143 29 H 0.056 0.944 30 H 0.018 0.982 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.375 0.625 42 H 0.271 0.729 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.064 0.936 50 H 0.050 0.950 51 H 0.062 0.938 52 H 0.064 0.936 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.223 -8.287 -16.140 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.009 4.009 5 N -0.313 5.313 6 C -0.076 4.076 7 C 0.294 3.706 8 O -0.403 6.403 9 C 0.281 3.719 10 O -0.431 6.431 11 N -0.316 5.316 12 C 0.000 4.000 13 C -0.153 4.153 14 C 0.194 3.806 15 O -0.396 6.396 16 C -0.595 4.595 17 H 0.088 0.912 18 C -0.173 4.173 19 N -0.553 5.553 20 Si 0.790 3.210 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.014 4.014 25 C -0.057 4.057 26 C -0.203 4.203 27 C -0.199 4.199 28 C -0.200 4.200 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.223 0.777 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.083 0.917 50 H 0.069 0.931 51 H 0.081 0.919 52 H 0.083 0.917 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.237 -8.701 -16.446 22.834 hybrid contribution -0.437 1.145 1.528 1.959 sum 12.801 -7.556 -14.918 21.059 Atomic orbital electron populations 1.21850 0.96035 1.01682 1.00029 1.21521 0.95348 0.99885 0.94172 0.90880 1.22071 1.01593 0.95377 0.81858 1.47779 1.17480 1.37963 1.28102 1.22386 0.94168 0.91156 0.99842 1.19774 0.82874 0.84348 0.83647 1.90697 1.53416 1.31178 1.65006 1.20358 0.81668 0.84541 0.85286 1.90616 1.52597 1.36735 1.63111 1.48714 1.13430 1.37577 1.31841 1.22102 0.87737 0.92040 0.98129 1.22721 0.97063 0.96190 0.99337 1.19838 0.87222 0.86226 0.87347 1.86117 1.85402 1.19640 1.48411 1.21723 1.31234 1.02144 1.04397 0.91246 1.25809 0.94805 0.95260 1.01407 1.69813 1.38974 1.06197 1.40280 0.85499 0.78999 0.77278 0.79213 1.19469 1.21017 1.19621 1.23012 0.97160 0.95406 0.85829 1.20465 0.96331 0.95299 0.93599 1.21983 1.00932 0.95298 1.02083 1.21908 1.00938 1.00234 0.96820 1.21948 0.93279 1.02315 1.02493 0.92455 0.96235 0.92113 0.87085 0.90087 0.91954 0.88341 0.90120 0.91688 0.89849 0.88986 0.89756 0.77661 0.92003 0.92296 0.92786 0.93272 0.91689 0.92567 0.92593 0.91688 0.93075 0.91917 0.91741 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 7.30 71.98 0.53 -2.82 16 2 C -0.09 -1.66 1.96 -10.79 -0.02 -1.68 16 3 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.11 2.20 4.25 86.38 0.37 2.56 16 5 N -0.58 -15.29 2.76 -848.34 -2.34 -17.63 16 6 C 0.07 1.56 9.56 127.77 1.22 2.78 16 7 C 0.51 17.43 6.15 87.27 0.54 17.97 16 8 O -0.53 -18.58 12.26 -3.23 -0.04 -18.62 16 9 C 0.50 20.37 7.80 87.27 0.68 21.05 16 10 O -0.55 -24.01 13.39 -3.27 -0.04 -24.05 16 11 N -0.58 -25.24 3.33 -813.39 -2.71 -27.94 16 12 C 0.12 4.71 5.49 86.73 0.48 5.19 16 13 C -0.12 -4.67 6.13 31.78 0.19 -4.48 16 14 C 0.23 11.45 0.88 -10.16 -0.01 11.44 16 15 O -0.59 -30.53 13.18 -148.98 -1.96 -32.49 16 16 C -0.56 -28.83 8.27 25.60 0.21 -28.62 16 17 H 0.07 3.48 7.79 -2.91 -0.02 3.46 16 18 C 0.03 1.47 5.27 84.66 0.45 1.91 16 19 N -0.91 -48.89 10.67 21.45 0.23 -48.66 16 20 Si 0.96 41.26 29.54 68.60 2.03 43.29 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 C 0.11 5.29 5.38 86.85 0.47 5.76 16 25 C -0.06 -0.78 0.57 -52.18 -0.03 -0.81 16 26 C -0.15 -2.11 7.77 71.98 0.56 -1.55 16 27 C -0.14 -1.90 8.12 71.98 0.58 -1.32 16 28 C -0.14 -1.50 8.13 71.98 0.59 -0.92 16 29 H 0.06 1.45 6.35 -2.38 -0.02 1.43 16 30 H 0.02 0.58 6.13 -2.39 -0.01 0.56 16 31 H 0.06 1.32 6.43 -2.39 -0.02 1.31 16 32 H 0.11 1.55 6.10 -2.39 -0.01 1.53 16 33 H 0.08 1.78 5.94 -2.39 -0.01 1.77 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.10 1.58 8.03 -2.39 -0.02 1.56 16 36 H 0.08 2.46 5.34 -2.52 -0.01 2.44 16 37 H 0.06 2.54 7.72 -2.39 -0.02 2.52 16 38 H 0.08 2.93 7.58 -2.39 -0.02 2.92 16 39 H 0.09 3.44 8.03 -2.39 -0.02 3.42 16 40 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.37 20.09 7.51 -74.05 -0.56 19.54 16 42 H 0.27 13.91 8.31 -92.70 -0.77 13.14 16 43 H 0.06 3.23 7.32 -2.38 -0.02 3.22 16 44 H 0.05 2.72 8.03 -2.38 -0.02 2.70 16 45 H 0.05 0.84 6.43 -2.39 -0.02 0.82 16 46 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.82 6.54 -2.39 -0.02 0.81 16 48 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.05 0.78 6.43 -2.38 -0.02 0.76 16 51 H 0.06 0.60 6.32 -2.39 -0.02 0.58 16 52 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 53 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -60.72 396.94 2.31 -58.40 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: 0.36 Total: 41.23 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 6.80 Total: 26.48 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -4.82 Total: -94.24 kcal Atomic # 8 Polarization: -73.12 SS G_CDS: -2.05 Total: -75.16 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -60.72 2.31 -58.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329775810.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.057 kcal (2) G-P(sol) polarization free energy of solvation -60.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds