Wall clock time and date at job start Sat Apr 11 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 C 1.53002 * 109.46943 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47323 * 60.00583 * 6 5 4 8 8 C 1.53003 * 109.46754 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47199 * 299.99885 * 6 5 4 10 10 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 11 11 C 1.34780 * 119.99910 * 85.00011 * 10 2 1 12 12 O 1.21351 * 119.99749 * 0.02562 * 11 10 2 13 13 C 1.49444 * 119.99926 * 180.02562 * 11 10 2 14 14 O 1.21343 * 120.00374 * 359.97438 * 13 11 10 15 15 N 1.34780 * 119.99926 * 179.97438 * 13 11 10 16 16 C 1.47024 * 125.64669 * 359.69300 * 15 13 11 17 17 C 1.54331 * 107.26304 * 178.85277 * 16 15 13 18 18 C 1.55153 * 103.02124 * 338.13660 * 17 16 15 19 19 O 1.42904 * 111.00399 * 277.23536 * 18 17 16 20 20 C 1.50702 * 111.03621 * 153.40240 * 18 17 16 21 21 H 1.07987 * 120.00496 * 6.32723 * 20 18 17 22 22 C 1.37883 * 119.99538 * 186.33030 * 20 18 17 23 23 N 1.31511 * 120.00049 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 119.99739 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47210 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47211 * 120.00185 * 24 22 20 27 27 H 1.48503 * 109.47504 * 240.00328 * 24 22 20 28 28 C 1.47420 * 125.64948 * 179.97438 * 15 13 11 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 33 33 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 34 34 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 35 35 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 36 36 H 1.09000 * 109.47237 * 59.99330 * 7 6 5 37 37 H 1.09001 * 109.47351 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.47184 * 299.99461 * 7 6 5 39 39 H 1.09000 * 109.47306 * 60.00190 * 8 6 5 40 40 H 1.09001 * 109.46765 * 180.02562 * 8 6 5 41 41 H 1.08996 * 109.47287 * 299.99816 * 8 6 5 42 42 H 1.09006 * 109.46922 * 60.00774 * 9 6 5 43 43 H 1.09001 * 109.47160 * 179.97438 * 9 6 5 44 44 H 1.08990 * 109.47530 * 300.00210 * 9 6 5 45 45 H 0.96994 * 119.99975 * 265.00388 * 10 2 1 46 46 H 1.09008 * 109.87878 * 298.39235 * 16 15 13 47 47 H 1.08994 * 109.88702 * 59.55886 * 16 15 13 48 48 H 1.09009 * 110.84463 * 219.66888 * 17 16 15 49 49 H 1.08999 * 110.67367 * 96.52238 * 17 16 15 50 50 H 0.96697 * 113.99940 * 173.65066 * 19 18 17 51 51 H 0.97007 * 119.99825 * 179.97438 * 23 22 20 52 52 H 1.09001 * 110.36704 * 322.93510 * 28 15 13 53 53 H 1.09009 * 110.36335 * 85.14515 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0748 -1.3350 2.5627 7 6 3.6702 -2.8092 2.5008 8 6 5.5996 -1.2265 2.6274 9 6 3.4648 -0.6905 3.8090 10 7 2.0184 -0.6906 -1.1961 11 6 2.1471 -0.0183 -2.3571 12 8 1.8589 1.1592 -2.4115 13 6 2.6448 -0.7230 -3.5774 14 8 2.9335 -1.9003 -3.5229 15 7 2.7731 -0.0507 -4.7386 16 6 2.4548 1.3696 -4.9460 17 6 2.7847 1.7028 -6.4164 18 6 3.7952 0.5925 -6.8083 19 8 5.1174 0.9305 -6.3844 20 6 3.7580 0.3261 -8.2911 21 1 3.1602 0.9515 -8.9373 22 6 4.4874 -0.7163 -8.8226 23 7 5.2159 -1.4776 -8.0357 24 14 4.4409 -1.0470 -10.6605 25 1 3.5537 -0.0553 -11.3196 26 1 5.8120 -0.9321 -11.2190 27 1 3.9203 -2.4163 -10.9041 28 6 3.2502 -0.6192 -6.0123 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.6054 -0.2617 2.1370 33 1 1.7517 -1.7714 1.2056 34 1 3.9995 -1.0728 0.4261 35 1 3.8532 0.4370 1.3574 36 1 4.1048 -3.2683 1.6129 37 1 4.0339 -3.3234 3.3904 38 1 2.5838 -2.8861 2.4549 39 1 5.8876 -0.1762 2.6717 40 1 5.9630 -1.7411 3.5170 41 1 6.0346 -1.6854 1.7396 42 1 2.3785 -0.7675 3.7631 43 1 3.8278 -1.2049 4.6988 44 1 3.7531 0.3597 3.8531 45 1 2.2490 -1.6317 -1.1525 46 1 1.3964 1.5443 -4.7527 47 1 3.0616 1.9862 -4.2830 48 1 3.2438 2.6882 -6.4973 49 1 1.8888 1.6445 -7.0345 50 1 5.7659 0.2262 -6.5198 51 1 5.7288 -2.2112 -8.4096 52 1 4.0452 -1.3425 -5.8308 53 1 2.4266 -1.0889 -6.5502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345867747.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:00 Heat of formation + Delta-G solvation = -163.056238 kcal Electronic energy + Delta-G solvation = -31093.108065 eV Core-core repulsion = 26963.075157 eV Total energy + Delta-G solvation = -4130.032908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.85250 -40.26635 -39.13781 -38.82888 -36.91751 -35.99491 -34.24913 -32.71755 -31.95270 -30.09339 -29.69584 -28.13648 -28.08723 -27.70389 -25.79282 -24.74671 -23.56403 -21.74192 -21.57135 -20.95013 -19.45536 -19.15850 -18.71936 -18.06728 -17.29766 -17.11053 -16.93107 -16.29415 -15.95416 -15.75543 -15.58683 -15.46718 -15.13227 -14.88183 -14.68378 -14.62277 -14.38594 -14.16136 -13.96351 -13.61051 -13.52795 -13.32552 -13.23489 -13.03643 -12.87022 -12.75139 -12.64058 -12.54129 -12.52256 -12.44368 -12.37161 -12.20429 -12.11991 -12.10273 -11.83038 -11.34793 -11.30585 -11.24452 -11.22169 -10.74958 -10.56263 -10.34700 -10.24908 -9.64717 -8.25842 -6.42539 0.36185 1.30478 1.42435 1.45690 1.56225 2.14020 2.37248 2.54101 3.00198 3.33201 3.60684 3.76597 3.87715 3.93344 4.04776 4.10599 4.14382 4.21011 4.25595 4.31463 4.49647 4.62057 4.65636 4.70753 4.71929 4.77210 4.81728 4.83370 4.87824 4.95769 4.96742 4.98035 5.04985 5.09882 5.10677 5.13905 5.14395 5.23844 5.26488 5.31077 5.33019 5.39615 5.42824 5.43804 5.57279 5.60643 5.73877 6.00928 6.08551 6.38092 6.63427 6.69207 6.95264 7.25830 7.34133 8.79981 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.002436 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.410782 B =11493.498026 C =12185.387323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.137 3.863 3 H 0.079 0.921 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.068 4.068 7 C -0.145 4.145 8 C -0.144 4.144 9 C -0.141 4.141 10 N -0.683 5.683 11 C 0.518 3.482 12 O -0.531 6.531 13 C 0.499 3.501 14 O -0.562 6.562 15 N -0.583 5.583 16 C 0.121 3.879 17 C -0.116 4.116 18 C 0.233 3.767 19 O -0.587 6.587 20 C -0.553 4.553 21 H 0.070 0.930 22 C 0.027 3.973 23 N -0.914 5.914 24 Si 0.966 3.034 25 H -0.265 1.265 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.106 3.894 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.414 0.586 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.374 0.626 51 H 0.270 0.730 52 H 0.058 0.942 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.242 0.650 22.321 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.097 0.903 4 C -0.157 4.157 5 C -0.149 4.149 6 C -0.068 4.068 7 C -0.202 4.202 8 C -0.202 4.202 9 C -0.198 4.198 10 N -0.336 5.336 11 C 0.298 3.702 12 O -0.408 6.408 13 C 0.283 3.717 14 O -0.443 6.443 15 N -0.315 5.315 16 C -0.001 4.001 17 C -0.153 4.153 18 C 0.193 3.807 19 O -0.395 6.395 20 C -0.591 4.591 21 H 0.088 0.912 22 C -0.174 4.174 23 N -0.553 5.553 24 Si 0.791 3.209 25 H -0.189 1.189 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.016 4.016 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.251 0.749 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.111 0.889 50 H 0.223 0.777 51 H 0.079 0.921 52 H 0.076 0.924 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.498 1.279 22.570 23.817 hybrid contribution 0.881 -1.459 -1.472 2.252 sum -6.617 -0.180 21.098 22.112 Atomic orbital electron populations 1.22155 0.93841 1.02955 1.02812 1.21344 0.94959 0.97187 0.83093 0.90321 1.22023 0.95481 1.01909 0.96270 1.21658 0.95660 1.00290 0.97320 1.20534 0.95173 0.95830 0.95312 1.21947 1.02000 0.94732 1.01493 1.21896 0.95228 1.01558 1.01501 1.21910 1.01337 1.00284 0.96237 1.45914 1.64421 1.14942 1.08320 1.19753 0.79120 0.86705 0.84672 1.90711 1.49509 1.15628 1.84907 1.20358 0.80286 0.86644 0.84447 1.90692 1.51941 1.16504 1.85124 1.48710 1.60598 1.12916 1.09280 1.22139 1.01048 0.79750 0.97194 1.22723 0.98989 0.99542 0.94082 1.19867 0.80555 0.89076 0.91247 1.86125 1.20712 1.45717 1.86949 1.21773 1.29623 1.14959 0.92792 0.91203 1.25823 0.93936 0.94877 1.02777 1.69830 1.29663 1.19009 1.36838 0.85385 0.77943 0.77935 0.79631 1.18878 1.20667 1.20706 1.23046 0.97851 0.99212 0.81508 0.91421 0.94128 0.89013 0.87620 0.89817 0.93588 0.92436 0.93686 0.92340 0.91352 0.92904 0.92020 0.93802 0.91288 0.92458 0.92815 0.74878 0.89772 0.91333 0.89673 0.88936 0.77737 0.92066 0.92360 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.48 71.98 0.68 -1.87 16 2 C 0.14 2.51 2.57 44.99 0.12 2.63 16 3 H 0.08 1.69 7.58 -2.39 -0.02 1.67 16 4 C -0.12 -1.51 4.05 30.59 0.12 -1.39 16 5 C -0.11 -1.78 4.16 30.59 0.13 -1.66 16 6 C -0.07 -0.93 0.80 -52.18 -0.04 -0.97 16 7 C -0.14 -1.87 8.12 71.98 0.58 -1.28 16 8 C -0.14 -2.19 8.47 71.98 0.61 -1.58 16 9 C -0.14 -1.48 8.12 71.98 0.58 -0.90 16 10 N -0.68 -16.88 4.52 -443.87 -2.01 -18.89 16 11 C 0.52 17.17 7.82 87.27 0.68 17.85 16 12 O -0.53 -18.69 13.79 -3.25 -0.04 -18.74 16 13 C 0.50 20.34 7.91 87.27 0.69 21.03 16 14 O -0.56 -25.15 16.73 -3.22 -0.05 -25.20 16 15 N -0.58 -25.10 3.33 -813.40 -2.71 -27.81 16 16 C 0.12 4.61 5.49 86.73 0.48 5.08 16 17 C -0.12 -4.65 6.13 31.78 0.19 -4.45 16 18 C 0.23 11.40 0.87 -10.16 -0.01 11.39 16 19 O -0.59 -30.53 13.16 -148.98 -1.96 -32.49 16 20 C -0.55 -28.66 8.27 25.60 0.21 -28.45 16 21 H 0.07 3.52 7.79 -2.92 -0.02 3.49 16 22 C 0.03 1.40 5.29 84.66 0.45 1.84 16 23 N -0.91 -49.13 10.69 21.45 0.23 -48.90 16 24 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 28 C 0.11 5.19 5.38 86.85 0.47 5.66 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.11 0.93 6.43 -2.39 -0.02 0.91 16 33 H 0.08 0.94 6.43 -2.39 -0.02 0.92 16 34 H 0.05 0.93 7.75 -2.39 -0.02 0.91 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.74 6.43 -2.38 -0.02 0.72 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.58 6.43 -2.38 -0.02 0.56 16 43 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 44 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.41 9.70 8.07 -92.71 -0.75 8.95 16 46 H 0.08 2.89 7.71 -2.38 -0.02 2.87 16 47 H 0.07 2.65 7.57 -2.39 -0.02 2.63 16 48 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 49 H 0.09 3.42 8.03 -2.39 -0.02 3.40 16 50 H 0.37 20.10 7.56 -74.06 -0.56 19.54 16 51 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 52 H 0.06 3.21 7.33 -2.39 -0.02 3.19 16 53 H 0.06 2.79 8.03 -2.38 -0.02 2.77 16 Total: -1.00 -62.02 415.17 1.03 -60.99 By element: Atomic # 1 Polarization: 45.04 SS G_CDS: -0.40 Total: 44.64 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 5.95 Total: 22.93 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -4.48 Total: -95.59 kcal Atomic # 8 Polarization: -74.37 SS G_CDS: -2.06 Total: -76.43 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -62.02 1.03 -60.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345867747.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.062 kcal (2) G-P(sol) polarization free energy of solvation -62.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds