Wall clock time and date at job start Sat Apr 11 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47364 * 2 1 4 4 C 1.53004 * 109.47132 * 120.00583 * 2 1 3 5 5 C 1.52997 * 109.47424 * 185.00066 * 4 2 1 6 6 C 1.52996 * 109.47219 * 179.97438 * 5 4 2 7 7 C 1.52992 * 109.47237 * 59.99579 * 6 5 4 8 8 C 1.52999 * 109.47051 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.46955 * 299.99531 * 6 5 4 10 10 N 1.46504 * 109.46855 * 240.00043 * 2 1 3 11 11 C 1.34777 * 119.99827 * 85.00680 * 10 2 1 12 12 O 1.21345 * 120.00010 * 359.97438 * 11 10 2 13 13 C 1.49454 * 119.99788 * 179.97438 * 11 10 2 14 14 O 1.21345 * 120.00202 * 359.97438 * 13 11 10 15 15 N 1.34782 * 119.99657 * 179.97438 * 13 11 10 16 16 C 1.47021 * 125.64903 * 359.95924 * 15 13 11 17 17 C 1.54371 * 107.28632 * 181.12818 * 16 15 13 18 18 C 1.55156 * 102.92059 * 22.13773 * 17 16 15 19 19 O 1.42894 * 111.00351 * 82.64238 * 18 17 16 20 20 C 1.50705 * 111.00016 * 206.45621 * 18 17 16 21 21 H 1.07993 * 120.00222 * 356.18276 * 20 18 17 22 22 C 1.37881 * 119.99392 * 175.91314 * 20 18 17 23 23 N 1.31509 * 120.00570 * 354.23595 * 22 20 18 24 24 Si 1.86802 * 119.99449 * 174.23797 * 22 20 18 25 25 H 1.48500 * 109.47140 * 94.98922 * 24 22 20 26 26 H 1.48506 * 109.47182 * 214.98446 * 24 22 20 27 27 H 1.48500 * 109.47323 * 334.98680 * 24 22 20 28 28 C 1.47424 * 125.64568 * 179.97438 * 15 13 11 29 29 H 1.09003 * 109.46839 * 299.99757 * 1 2 3 30 30 H 1.09000 * 109.46950 * 59.99710 * 1 2 3 31 31 H 1.08997 * 109.47119 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46661 * 304.99935 * 4 2 1 33 33 H 1.08996 * 109.47181 * 64.99133 * 4 2 1 34 34 H 1.09002 * 109.46660 * 299.99916 * 5 4 2 35 35 H 1.08997 * 109.47245 * 59.99117 * 5 4 2 36 36 H 1.09002 * 109.47556 * 60.00354 * 7 6 5 37 37 H 1.09000 * 109.46986 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.47328 * 300.00076 * 7 6 5 39 39 H 1.09001 * 109.46833 * 59.99824 * 8 6 5 40 40 H 1.09000 * 109.47100 * 179.97438 * 8 6 5 41 41 H 1.09003 * 109.47456 * 299.99752 * 8 6 5 42 42 H 1.09002 * 109.47001 * 60.00297 * 9 6 5 43 43 H 1.09000 * 109.47158 * 180.02562 * 9 6 5 44 44 H 1.09001 * 109.47311 * 300.00410 * 9 6 5 45 45 H 0.96999 * 120.00200 * 264.99996 * 10 2 1 46 46 H 1.08996 * 109.87865 * 300.51069 * 16 15 13 47 47 H 1.09004 * 109.88436 * 61.67611 * 16 15 13 48 48 H 1.09003 * 110.70184 * 263.79158 * 17 16 15 49 49 H 1.08998 * 110.75668 * 140.50398 * 17 16 15 50 50 H 0.96708 * 113.99643 * 183.17715 * 19 18 17 51 51 H 0.96997 * 120.00732 * 179.97438 * 23 22 20 52 52 H 1.08999 * 110.36723 * 36.99330 * 28 15 13 53 53 H 1.09001 * 110.45885 * 274.72191 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3137 6 6 4.0747 -1.3343 2.5632 7 6 3.6699 -2.8084 2.5025 8 6 5.5996 -1.2269 2.6274 9 6 3.4647 -0.6887 3.8090 10 7 2.0183 -0.6906 -1.1962 11 6 2.1471 -0.0182 -2.3571 12 8 1.8582 1.1591 -2.4117 13 6 2.6458 -0.7226 -3.5773 14 8 2.9351 -1.8998 -3.5227 15 7 2.7741 -0.0503 -4.7384 16 6 2.4602 1.3712 -4.9446 17 6 2.7333 1.6904 -6.4301 18 6 2.6471 0.2965 -7.1060 19 8 1.2897 -0.0578 -7.3777 20 6 3.4756 0.2541 -8.3641 21 1 3.9758 1.1460 -8.7116 22 6 3.5995 -0.9247 -9.0685 23 7 3.0904 -2.0365 -8.5847 24 14 4.4906 -0.9423 -10.7102 25 1 5.9081 -1.3318 -10.4999 26 1 3.8379 -1.9205 -11.6172 27 1 4.4342 0.4111 -11.3187 28 6 3.2521 -0.6185 -6.0119 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7716 1.2055 34 1 3.9994 -1.0729 0.4259 35 1 3.8532 0.4368 1.3574 36 1 4.1045 -3.2684 1.6150 37 1 4.0328 -3.3218 3.3929 38 1 2.5835 -2.8853 2.4566 39 1 5.8883 -0.1767 2.6704 40 1 5.9628 -1.7400 3.5178 41 1 6.0340 -1.6870 1.7398 42 1 2.3783 -0.7656 3.7631 43 1 3.8283 -1.2020 4.6993 44 1 3.7530 0.3615 3.8523 45 1 2.2490 -1.6318 -1.1527 46 1 1.4114 1.5566 -4.7130 47 1 3.0968 1.9873 -4.3095 48 1 3.7277 2.1191 -6.5556 49 1 1.9706 2.3598 -6.8279 50 1 1.1820 -0.9414 -7.7557 51 1 3.1773 -2.8657 -9.0804 52 1 2.8919 -1.6405 -6.1303 53 1 4.3409 -0.5934 -6.0555 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345867748.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:04 Heat of formation + Delta-G solvation = -162.957956 kcal Electronic energy + Delta-G solvation = -31039.965719 eV Core-core repulsion = 26909.937074 eV Total energy + Delta-G solvation = -4130.028646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.84801 -40.26183 -39.13486 -38.82651 -36.91967 -36.01145 -34.24679 -32.71647 -31.95392 -30.09315 -29.69171 -28.13041 -28.08537 -27.70258 -25.79606 -24.74401 -23.55527 -21.74163 -21.56892 -20.94355 -19.44920 -19.17897 -18.72595 -18.07250 -17.24383 -17.07871 -16.98932 -16.29339 -15.99681 -15.66640 -15.55261 -15.51084 -15.10127 -14.92021 -14.68794 -14.62149 -14.38209 -14.16448 -13.95872 -13.62826 -13.55631 -13.32719 -13.23664 -13.04258 -12.83758 -12.74849 -12.63567 -12.53292 -12.51633 -12.44232 -12.35292 -12.24214 -12.12745 -12.10798 -11.82793 -11.34288 -11.30051 -11.23682 -11.20508 -10.74094 -10.59581 -10.32649 -10.26542 -9.63871 -8.25910 -6.42714 0.36541 1.31036 1.42709 1.45972 1.55927 2.14370 2.37230 2.54539 2.99362 3.33507 3.60831 3.75905 3.88109 3.93890 4.04701 4.10789 4.15190 4.20855 4.25830 4.31800 4.49714 4.62106 4.66180 4.71209 4.72456 4.77160 4.81601 4.83738 4.87997 4.96208 4.97465 4.98184 5.05349 5.10175 5.10898 5.14496 5.15081 5.24130 5.26476 5.31598 5.33985 5.39743 5.42047 5.44517 5.57655 5.60887 5.73735 6.00112 6.08050 6.38778 6.63075 6.69294 6.95558 7.25411 7.32304 8.79258 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.002369 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.995561 B =11817.437319 C =12482.330171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 H 0.081 0.919 4 C -0.120 4.120 5 C -0.111 4.111 6 C -0.068 4.068 7 C -0.145 4.145 8 C -0.144 4.144 9 C -0.141 4.141 10 N -0.683 5.683 11 C 0.518 3.482 12 O -0.531 6.531 13 C 0.499 3.501 14 O -0.562 6.562 15 N -0.583 5.583 16 C 0.120 3.880 17 C -0.115 4.115 18 C 0.233 3.767 19 O -0.587 6.587 20 C -0.556 4.556 21 H 0.070 0.930 22 C 0.028 3.972 23 N -0.914 5.914 24 Si 0.965 3.035 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.267 1.267 28 C 0.106 3.894 29 H 0.092 0.908 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.414 0.586 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.374 0.626 51 H 0.270 0.730 52 H 0.058 0.942 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.855 2.403 23.778 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.099 0.901 4 C -0.157 4.157 5 C -0.148 4.148 6 C -0.068 4.068 7 C -0.202 4.202 8 C -0.201 4.201 9 C -0.198 4.198 10 N -0.336 5.336 11 C 0.298 3.702 12 O -0.408 6.408 13 C 0.282 3.718 14 O -0.443 6.443 15 N -0.315 5.315 16 C -0.002 4.002 17 C -0.153 4.153 18 C 0.193 3.807 19 O -0.394 6.394 20 C -0.594 4.594 21 H 0.088 0.912 22 C -0.173 4.173 23 N -0.553 5.553 24 Si 0.790 3.210 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.191 1.191 28 C -0.016 4.016 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.251 0.749 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.111 0.889 49 H 0.104 0.896 50 H 0.223 0.777 51 H 0.080 0.920 52 H 0.077 0.923 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.055 3.032 24.074 24.287 hybrid contribution 0.807 -1.447 -1.513 2.244 sum -0.248 1.585 22.561 22.618 Atomic orbital electron populations 1.22168 0.94155 1.02868 1.02736 1.21339 0.94748 0.97288 0.83114 0.90086 1.22024 0.95678 1.01828 0.96187 1.21651 0.95458 1.00389 0.97328 1.20533 0.95264 0.95747 0.95306 1.21951 1.01944 0.94838 1.01494 1.21889 0.95094 1.01608 1.01517 1.21915 1.01292 1.00325 0.96282 1.45917 1.64426 1.14947 1.08319 1.19757 0.79140 0.86723 0.84623 1.90709 1.49505 1.15732 1.84809 1.20364 0.80232 0.86619 0.84554 1.90692 1.52045 1.16394 1.85155 1.48722 1.60609 1.12975 1.09203 1.22146 1.01207 0.79721 0.97081 1.22735 1.03032 0.97013 0.92527 1.19856 0.80091 0.89999 0.90779 1.86124 1.28799 1.38871 1.85620 1.21755 1.31675 0.96733 1.09213 0.91155 1.25817 0.95471 0.94867 1.01190 1.69861 1.46255 0.99694 1.39441 0.85433 0.78254 0.78142 0.79129 1.20257 1.20842 1.19102 1.23073 0.97841 0.99337 0.81312 0.88938 0.94362 0.91572 0.87674 0.89955 0.93409 0.92253 0.93608 0.92386 0.91507 0.92813 0.92109 0.93669 0.91401 0.92506 0.92740 0.74880 0.91333 0.89820 0.88946 0.89602 0.77750 0.92030 0.92345 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.48 71.98 0.68 -2.06 16 2 C 0.14 2.54 2.58 44.99 0.12 2.66 16 3 H 0.08 1.70 7.58 -2.39 -0.02 1.68 16 4 C -0.12 -1.50 4.05 30.59 0.12 -1.37 16 5 C -0.11 -1.66 4.16 30.59 0.13 -1.53 16 6 C -0.07 -0.87 0.80 -52.18 -0.04 -0.92 16 7 C -0.15 -1.81 8.12 71.98 0.58 -1.23 16 8 C -0.14 -2.01 8.47 71.98 0.61 -1.40 16 9 C -0.14 -1.42 8.12 71.98 0.58 -0.83 16 10 N -0.68 -16.95 4.52 -443.85 -2.01 -18.95 16 11 C 0.52 17.22 7.82 87.27 0.68 17.91 16 12 O -0.53 -18.73 13.79 -3.23 -0.04 -18.78 16 13 C 0.50 20.41 7.91 87.27 0.69 21.10 16 14 O -0.56 -25.27 16.73 -3.23 -0.05 -25.32 16 15 N -0.58 -25.20 3.33 -813.23 -2.71 -27.91 16 16 C 0.12 4.61 5.49 86.75 0.48 5.09 16 17 C -0.12 -4.64 6.13 31.80 0.19 -4.44 16 18 C 0.23 11.40 0.88 -10.14 -0.01 11.39 16 19 O -0.59 -30.38 13.17 -148.98 -1.96 -32.34 16 20 C -0.56 -28.73 8.25 25.60 0.21 -28.52 16 21 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 22 C 0.03 1.43 5.27 84.66 0.45 1.88 16 23 N -0.91 -49.03 10.70 21.45 0.23 -48.80 16 24 Si 0.97 41.32 29.54 68.60 2.03 43.35 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 28 C 0.11 5.24 5.40 86.86 0.47 5.71 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 0.92 6.43 -2.39 -0.02 0.90 16 33 H 0.08 0.94 6.43 -2.39 -0.02 0.92 16 34 H 0.05 0.90 7.75 -2.39 -0.02 0.88 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.72 6.43 -2.39 -0.02 0.70 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.56 6.43 -2.39 -0.02 0.54 16 43 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.41 9.74 8.07 -92.71 -0.75 8.99 16 46 H 0.07 2.65 7.58 -2.39 -0.02 2.63 16 47 H 0.08 2.88 7.69 -2.39 -0.02 2.87 16 48 H 0.09 3.42 8.03 -2.39 -0.02 3.40 16 49 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 50 H 0.37 19.99 7.54 -74.05 -0.56 19.43 16 51 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 52 H 0.06 3.23 7.31 -2.39 -0.02 3.22 16 53 H 0.05 2.76 8.03 -2.39 -0.02 2.75 16 Total: -1.00 -61.88 415.14 1.03 -60.85 By element: Atomic # 1 Polarization: 44.86 SS G_CDS: -0.40 Total: 44.46 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 5.95 Total: 23.43 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -4.48 Total: -95.66 kcal Atomic # 8 Polarization: -74.37 SS G_CDS: -2.06 Total: -76.43 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -61.88 1.03 -60.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345867748.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.103 kcal (2) G-P(sol) polarization free energy of solvation -61.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds