Wall clock time and date at job start Sat Apr 11 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 O 1.42899 * 109.47131 * 304.99933 * 4 2 1 6 6 C 1.42901 * 114.00352 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47530 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47293 * 295.00217 * 7 6 5 9 9 C 1.52998 * 109.47293 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46998 * 59.99559 * 9 8 7 11 11 C 1.53001 * 109.47331 * 299.99990 * 10 9 8 12 12 C 1.52997 * 109.47204 * 174.99455 * 7 6 5 13 13 N 1.46492 * 109.47363 * 120.00126 * 2 1 3 14 14 C 1.34779 * 120.00234 * 275.00260 * 13 2 1 15 15 O 1.21346 * 119.99611 * 0.02562 * 14 13 2 16 16 C 1.49449 * 120.00353 * 179.97438 * 14 13 2 17 17 O 1.21356 * 119.99578 * 0.02562 * 16 14 13 18 18 N 1.34770 * 120.00167 * 179.97438 * 16 14 13 19 19 C 1.46500 * 120.00256 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47521 * 179.97438 * 19 18 16 21 21 C 1.50693 * 109.46984 * 179.97438 * 20 19 18 22 22 H 1.08003 * 120.00461 * 0.02562 * 21 20 19 23 23 C 1.37877 * 119.99711 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00115 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99985 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47101 * 60.00042 * 25 23 21 27 27 H 1.48507 * 109.46972 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47136 * 300.00010 * 25 23 21 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 33 33 H 1.09004 * 109.47346 * 184.99897 * 4 2 1 34 34 H 1.09007 * 109.46808 * 299.99826 * 6 5 4 35 35 H 1.08998 * 109.47165 * 59.99279 * 6 5 4 36 36 H 1.09000 * 109.46684 * 54.99698 * 7 6 5 37 37 H 1.08999 * 109.46565 * 299.99866 * 8 7 6 38 38 H 1.09001 * 109.46970 * 59.99448 * 8 7 6 39 39 H 1.09000 * 109.46684 * 299.99481 * 9 8 7 40 40 H 1.08998 * 109.46971 * 180.02562 * 9 8 7 41 41 H 1.09006 * 109.46933 * 180.02562 * 10 9 8 42 42 H 1.09000 * 109.47011 * 60.00677 * 10 9 8 43 43 H 1.08999 * 109.46915 * 300.00111 * 11 10 9 44 44 H 1.09001 * 109.46842 * 180.02562 * 11 10 9 45 45 H 1.08990 * 109.47537 * 300.00286 * 12 7 6 46 46 H 1.09010 * 109.46581 * 60.00733 * 12 7 6 47 47 H 0.97005 * 120.00153 * 94.99794 * 13 2 1 48 48 H 0.97005 * 120.00370 * 0.02562 * 18 16 14 49 49 H 1.08999 * 109.47041 * 300.00627 * 19 18 16 50 50 H 1.09006 * 109.46890 * 59.99818 * 19 18 16 51 51 H 1.08993 * 109.46897 * 300.00350 * 20 19 18 52 52 H 1.09000 * 109.46398 * 60.00134 * 20 19 18 53 53 H 0.97001 * 120.00090 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 1.4703 -2.0302 -1.3096 6 6 1.8845 -2.7928 -2.4449 7 6 1.2171 -4.1690 -2.4061 8 6 1.7228 -4.9470 -1.1896 9 6 1.0549 -6.3229 -1.1505 10 6 1.3982 -7.0930 -2.4272 11 6 0.8925 -6.3150 -3.6437 12 6 1.5609 -4.9387 -3.6829 13 7 2.0184 -0.6906 1.1961 14 6 2.1471 -0.0183 2.3571 15 8 1.8580 1.1589 2.4117 16 6 2.6448 -0.7229 3.5775 17 8 2.9335 -1.9004 3.5229 18 7 2.7740 -0.0505 4.7383 19 6 3.2624 -0.7411 5.9344 20 6 3.3150 0.2422 7.1054 21 6 3.8168 -0.4684 8.3359 22 1 4.0730 -1.5165 8.2876 23 6 3.9489 0.2195 9.5235 24 7 3.6365 1.4956 9.5825 25 14 4.5702 -0.6615 11.0491 26 1 5.9310 -1.1972 10.7916 27 1 4.6202 0.2928 12.1859 28 1 3.6527 -1.7804 11.3827 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -0.1582 -2.1370 33 1 3.1264 -0.7994 -1.2057 34 1 1.5932 -2.2729 -3.3576 35 1 2.9676 -2.9139 -2.4257 36 1 0.1363 -4.0467 -2.3355 37 1 2.8036 -5.0692 -1.2602 38 1 1.4778 -4.3985 -0.2801 39 1 -0.0259 -6.2002 -1.0797 40 1 1.4148 -6.8770 -0.2836 41 1 0.9220 -8.0731 -2.3995 42 1 2.4790 -7.2157 -2.4980 43 1 -0.1883 -6.1924 -3.5729 44 1 1.1367 -6.8638 -4.5532 45 1 1.2006 -4.3845 -4.5494 46 1 2.6418 -5.0610 -3.7534 47 1 2.2491 -1.6318 1.1525 48 1 2.5436 0.8907 4.7819 49 1 2.5897 -1.5630 6.1796 50 1 4.2615 -1.1336 5.7449 51 1 3.9880 1.0637 6.8599 52 1 2.3161 0.6350 7.2951 53 1 3.7290 1.9795 10.4182 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351603108.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:15 Heat of formation + Delta-G solvation = -181.594177 kcal Electronic energy + Delta-G solvation = -29413.944242 eV Core-core repulsion = 25283.107469 eV Total energy + Delta-G solvation = -4130.836773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.75532 -40.12442 -39.66596 -38.51523 -36.95220 -36.22965 -34.82958 -32.94096 -31.89355 -31.66385 -31.54273 -27.74767 -27.44855 -26.21543 -25.33180 -23.44628 -22.94966 -22.18637 -22.02211 -21.41820 -20.60308 -19.61474 -18.59203 -18.09647 -17.39799 -17.07819 -17.00384 -16.59801 -16.45486 -16.39676 -16.10746 -15.74634 -15.25357 -15.04227 -14.96242 -14.75135 -14.63812 -14.45650 -14.29977 -14.19365 -13.39835 -13.26823 -13.17351 -13.04168 -12.94470 -12.92884 -12.86557 -12.71535 -12.54559 -12.27610 -12.21619 -12.03220 -11.97925 -11.82448 -11.68730 -11.45836 -11.31414 -10.95914 -10.90715 -10.70230 -10.61017 -10.48739 -10.35613 -10.20188 -8.23204 -6.34606 0.32215 1.31971 1.43552 1.45529 1.53715 2.11894 2.39816 2.59320 2.74422 3.11495 3.43378 3.71316 3.78170 3.88873 3.92431 4.04530 4.23611 4.29181 4.38373 4.40344 4.44153 4.44376 4.50464 4.54303 4.57584 4.59938 4.66397 4.73259 4.76760 4.80375 4.80633 4.84036 4.93274 5.05120 5.07711 5.20152 5.23323 5.26980 5.29090 5.32144 5.35168 5.41957 5.42595 5.50698 5.54423 5.60584 5.75246 5.94070 6.12787 6.26541 6.36434 6.71068 6.79455 6.93227 7.34768 8.88489 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.001822 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.799662 B =15360.588911 C =17016.327383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 H 0.104 0.896 4 C 0.059 3.941 5 O -0.398 6.398 6 C 0.065 3.935 7 C -0.081 4.081 8 C -0.111 4.111 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.109 4.109 13 N -0.681 5.681 14 C 0.515 3.485 15 O -0.541 6.541 16 C 0.498 3.502 17 O -0.550 6.550 18 N -0.689 5.689 19 C 0.138 3.862 20 C 0.019 3.981 21 C -0.546 4.546 22 H 0.064 0.936 23 C 0.005 3.995 24 N -0.927 5.927 25 Si 0.968 3.032 26 H -0.267 1.267 27 H -0.283 1.283 28 H -0.268 1.268 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.418 0.582 48 H 0.414 0.586 49 H 0.060 0.940 50 H 0.061 0.939 51 H 0.008 0.992 52 H 0.007 0.993 53 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 -10.902 -32.679 34.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.037 3.963 3 H 0.122 0.878 4 C -0.018 4.018 5 O -0.317 6.317 6 C -0.011 4.011 7 C -0.100 4.100 8 C -0.149 4.149 9 C -0.160 4.160 10 C -0.157 4.157 11 C -0.155 4.155 12 C -0.146 4.146 13 N -0.334 5.334 14 C 0.295 3.705 15 O -0.418 6.418 16 C 0.279 3.721 17 O -0.428 6.428 18 N -0.340 5.340 19 C 0.015 3.985 20 C -0.019 4.019 21 C -0.585 4.585 22 H 0.083 0.917 23 C -0.194 4.194 24 N -0.566 5.566 25 Si 0.792 3.208 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.192 1.192 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.256 0.744 48 H 0.251 0.749 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.027 0.973 52 H 0.026 0.974 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.681 -10.823 -32.439 34.665 hybrid contribution 0.418 0.009 1.126 1.201 sum -5.262 -10.814 -31.313 33.543 Atomic orbital electron populations 1.22029 0.93856 1.02816 1.02539 1.21394 0.95726 0.96978 0.82222 0.87786 1.22797 0.97814 0.84348 0.96874 1.87874 1.70538 1.26489 1.46832 1.22660 0.98492 0.91690 0.88260 1.21115 1.00479 0.92648 0.95726 1.21500 0.99891 0.95542 0.97922 1.21544 1.00427 0.95977 0.98025 1.21550 1.01153 0.98587 0.94459 1.21518 1.00240 0.95615 0.98096 1.21503 1.01088 0.95751 0.96303 1.45847 1.63999 1.15242 1.08314 1.19947 0.79003 0.86625 0.84892 1.90746 1.49990 1.16025 1.85046 1.20406 0.79621 0.86957 0.85131 1.90720 1.50510 1.16150 1.85446 1.46068 1.63455 1.15250 1.09208 1.21478 0.98438 0.95722 0.82856 1.19176 0.96515 0.94352 0.91853 1.21416 1.44803 0.97102 0.95145 0.91733 1.25920 0.95369 0.95621 1.02465 1.70070 1.48996 1.09672 1.27907 0.85454 0.79193 0.78234 0.77889 1.19178 1.20805 1.19241 0.94039 0.89297 0.91802 0.88956 0.91852 0.91770 0.92908 0.91175 0.92330 0.92899 0.92398 0.92568 0.91802 0.92035 0.92098 0.90999 0.90797 0.91549 0.74424 0.74919 0.92147 0.92032 0.97335 0.97421 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.29 71.98 0.67 -2.02 16 2 C 0.14 2.44 2.98 44.99 0.13 2.58 16 3 H 0.10 1.86 7.58 -2.39 -0.02 1.84 16 4 C 0.06 0.71 5.68 71.98 0.41 1.12 16 5 O -0.40 -5.86 8.73 -148.98 -1.30 -7.16 16 6 C 0.07 0.72 5.32 71.98 0.38 1.10 16 7 C -0.08 -0.96 2.43 -10.80 -0.03 -0.99 16 8 C -0.11 -1.66 5.10 30.59 0.16 -1.50 16 9 C -0.12 -1.71 5.92 30.59 0.18 -1.53 16 10 C -0.12 -1.33 5.92 30.59 0.18 -1.15 16 11 C -0.12 -1.08 5.92 30.61 0.18 -0.89 16 12 C -0.11 -0.96 5.21 30.61 0.16 -0.80 16 13 N -0.68 -15.79 5.05 -443.88 -2.24 -18.04 16 14 C 0.52 15.49 7.85 87.27 0.69 16.17 16 15 O -0.54 -18.05 16.14 -3.23 -0.05 -18.10 16 16 C 0.50 17.51 7.89 87.27 0.69 18.20 16 17 O -0.55 -21.16 16.48 -3.27 -0.05 -21.21 16 18 N -0.69 -25.81 5.55 -464.40 -2.58 -28.39 16 19 C 0.14 5.90 5.61 86.38 0.48 6.39 16 20 C 0.02 0.95 5.09 29.85 0.15 1.10 16 21 C -0.55 -30.44 9.11 25.60 0.23 -30.20 16 22 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 23 C 0.01 0.29 5.46 84.66 0.46 0.75 16 24 N -0.93 -55.04 13.29 21.45 0.28 -54.75 16 25 Si 0.97 43.62 29.54 68.60 2.03 45.65 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.19 7.56 -2.39 -0.02 1.17 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 0.99 7.82 -2.39 -0.02 0.97 16 39 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 44 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 47 H 0.42 9.54 7.85 -92.70 -0.73 8.81 16 48 H 0.41 14.93 7.95 -92.70 -0.74 14.19 16 49 H 0.06 2.61 8.14 -2.39 -0.02 2.60 16 50 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 51 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 52 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 53 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -66.11 428.52 0.64 -65.48 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: -0.58 Total: 28.20 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.13 Total: 8.32 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -4.53 Total: -101.18 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -1.41 Total: -46.47 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -66.11 0.64 -65.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351603108.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.118 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds