Wall clock time and date at job start Sat Apr 11 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47481 * 2 1 4 4 C 1.53005 * 109.46957 * 120.00830 * 2 1 3 5 5 O 1.42895 * 109.47347 * 54.99859 * 4 2 1 6 6 C 1.42894 * 113.99863 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47240 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.46817 * 64.99822 * 7 6 5 9 9 C 1.52999 * 109.47317 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47159 * 300.00546 * 9 8 7 11 11 C 1.52997 * 109.47452 * 59.99536 * 10 9 8 12 12 C 1.53000 * 109.47233 * 184.99627 * 7 6 5 13 13 N 1.46499 * 109.46733 * 240.00351 * 2 1 3 14 14 C 1.34780 * 120.00017 * 85.00096 * 13 2 1 15 15 O 1.21343 * 120.00153 * 0.02562 * 14 13 2 16 16 C 1.49452 * 119.99973 * 179.97438 * 14 13 2 17 17 O 1.21353 * 119.99852 * 0.02562 * 16 14 13 18 18 N 1.34780 * 119.99973 * 180.02562 * 16 14 13 19 19 C 1.46499 * 120.00017 * 180.02562 * 18 16 14 20 20 C 1.52994 * 109.47321 * 180.02562 * 19 18 16 21 21 C 1.50691 * 109.47516 * 180.02562 * 20 19 18 22 22 H 1.08004 * 120.00148 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00451 * 180.02562 * 21 20 19 24 24 N 1.31519 * 120.00430 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99773 * 359.97438 * 23 21 20 26 26 H 1.48508 * 109.46813 * 90.00297 * 25 23 21 27 27 H 1.48497 * 109.47120 * 209.99970 * 25 23 21 28 28 H 1.48498 * 109.47131 * 330.00295 * 25 23 21 29 29 H 1.08998 * 109.47481 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46737 * 299.99516 * 1 2 3 31 31 H 1.09000 * 109.46814 * 59.99260 * 1 2 3 32 32 H 1.09001 * 109.46554 * 294.99222 * 4 2 1 33 33 H 1.09006 * 109.46505 * 174.99479 * 4 2 1 34 34 H 1.09008 * 109.47321 * 59.99557 * 6 5 4 35 35 H 1.08997 * 109.47221 * 299.99487 * 6 5 4 36 36 H 1.09002 * 109.47070 * 305.00002 * 7 6 5 37 37 H 1.08996 * 109.47853 * 300.00202 * 8 7 6 38 38 H 1.09002 * 109.47153 * 60.00231 * 8 7 6 39 39 H 1.09000 * 109.47486 * 180.02562 * 9 8 7 40 40 H 1.09002 * 109.46716 * 60.00091 * 9 8 7 41 41 H 1.09002 * 109.46935 * 299.99411 * 10 9 8 42 42 H 1.09001 * 109.46812 * 179.97438 * 10 9 8 43 43 H 1.08993 * 109.47194 * 179.97438 * 11 10 9 44 44 H 1.09002 * 109.46695 * 59.99734 * 11 10 9 45 45 H 1.08992 * 109.47399 * 300.00166 * 12 7 6 46 46 H 1.09004 * 109.46724 * 60.00652 * 12 7 6 47 47 H 0.97005 * 119.99967 * 264.99851 * 13 2 1 48 48 H 0.96992 * 119.99511 * 0.02562 * 18 16 14 49 49 H 1.08998 * 109.47229 * 300.00529 * 19 18 16 50 50 H 1.09005 * 109.46918 * 59.99612 * 19 18 16 51 51 H 1.09007 * 109.47217 * 300.00311 * 20 19 18 52 52 H 1.09007 * 109.47036 * 59.99648 * 20 19 18 53 53 H 0.97001 * 119.99947 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7215 1.2492 5 8 1.4702 -2.0305 1.3092 6 6 1.8836 -2.7927 2.4450 7 6 1.2152 -4.1685 2.4067 8 6 1.7208 -4.9473 1.1907 9 6 1.0530 -6.3234 1.1526 10 6 1.3965 -7.0925 2.4299 11 6 0.8909 -6.3137 3.6458 12 6 1.5583 -4.9380 3.6838 13 7 2.0183 -0.6905 -1.1962 14 6 2.1469 -0.0181 -2.3572 15 8 1.8589 1.1594 -2.4115 16 6 2.6456 -0.7224 -3.5774 17 8 2.9341 -1.8999 -3.5229 18 7 2.7748 -0.0499 -4.7382 19 6 3.2630 -0.7404 -5.9345 20 6 3.3157 0.2430 -7.1053 21 6 3.8173 -0.4674 -8.3359 22 1 4.0734 -1.5156 -8.2877 23 6 3.9503 0.2208 -9.5232 24 7 4.3877 -0.3994 -10.5974 25 14 3.5081 2.0338 -9.6064 26 1 4.7062 2.8507 -9.2861 27 1 3.0342 2.3654 -10.9741 28 1 2.4326 2.3265 -8.6253 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 1.7517 -0.1585 2.1369 33 1 3.1264 -0.7997 1.2054 34 1 1.5917 -2.2727 3.3575 35 1 2.9666 -2.9140 2.4266 36 1 0.1345 -4.0456 2.3357 37 1 1.4766 -4.3993 0.2808 38 1 2.8016 -5.0703 1.2616 39 1 1.4136 -6.8784 0.2865 40 1 -0.0277 -6.2008 1.0818 41 1 2.4773 -7.2151 2.5006 42 1 0.9204 -8.0727 2.4028 43 1 1.1352 -6.8619 4.5557 44 1 -0.1899 -6.1912 3.5750 45 1 2.6389 -5.0609 3.7548 46 1 1.1980 -4.3831 4.5501 47 1 2.2489 -1.6318 -1.1527 48 1 2.5445 0.8913 -4.7815 49 1 4.2620 -1.1331 -5.7450 50 1 2.5901 -1.5622 -6.1796 51 1 2.3168 0.6361 -7.2949 52 1 3.9888 1.0645 -6.8597 53 1 4.4816 0.0849 -11.4326 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351603133.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:19 Heat of formation + Delta-G solvation = -178.996034 kcal Electronic energy + Delta-G solvation = -29470.860982 eV Core-core repulsion = 25340.136873 eV Total energy + Delta-G solvation = -4130.724109 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.76371 -40.13275 -39.67585 -38.51810 -36.99598 -36.23831 -34.80822 -32.94417 -32.13406 -31.85820 -31.55844 -27.77527 -27.59860 -26.21507 -25.20357 -23.44469 -22.72671 -22.19867 -22.04036 -21.41539 -20.60589 -19.59252 -19.02645 -18.14304 -17.42720 -17.09642 -17.00986 -16.54573 -16.45643 -16.19168 -16.15607 -15.80392 -15.30810 -15.06137 -14.99560 -14.78959 -14.71767 -14.56698 -14.45194 -14.20322 -13.42043 -13.37726 -13.17653 -13.07437 -13.04729 -12.95265 -12.86955 -12.72673 -12.23990 -12.21173 -12.19774 -12.03062 -11.98075 -11.82845 -11.78762 -11.51764 -11.31716 -10.96456 -10.91012 -10.79414 -10.71903 -10.48978 -10.36005 -10.23870 -8.30601 -6.37487 0.31827 1.31098 1.39207 1.40973 1.52240 2.11485 2.36019 2.57190 2.72597 3.04481 3.42325 3.71207 3.77840 3.88616 3.92074 4.04517 4.23221 4.25691 4.29294 4.37790 4.40061 4.43980 4.50366 4.53985 4.57491 4.59846 4.66192 4.71375 4.72880 4.76891 4.80287 4.83685 4.93203 4.98410 5.04759 5.19795 5.22896 5.26556 5.28750 5.29140 5.31799 5.35543 5.36277 5.42220 5.50247 5.58226 5.60187 5.92058 6.20135 6.26421 6.35677 6.67701 6.74206 6.92917 7.27079 8.85619 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015961 B = 0.001856 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.890941 B =15085.896475 C =16539.173473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 H 0.106 0.894 4 C 0.058 3.942 5 O -0.398 6.398 6 C 0.065 3.935 7 C -0.081 4.081 8 C -0.111 4.111 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.109 4.109 13 N -0.682 5.682 14 C 0.516 3.484 15 O -0.539 6.539 16 C 0.498 3.502 17 O -0.550 6.550 18 N -0.688 5.688 19 C 0.142 3.858 20 C -0.017 4.017 21 C -0.537 4.537 22 H 0.035 0.965 23 C 0.008 3.992 24 N -0.947 5.947 25 Si 0.953 3.047 26 H -0.265 1.265 27 H -0.285 1.285 28 H -0.241 1.241 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.418 0.582 48 H 0.418 0.582 49 H 0.059 0.941 50 H 0.058 0.942 51 H 0.035 0.965 52 H 0.035 0.965 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.264 -4.170 36.365 37.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 H 0.124 0.876 4 C -0.019 4.019 5 O -0.317 6.317 6 C -0.011 4.011 7 C -0.099 4.099 8 C -0.149 4.149 9 C -0.160 4.160 10 C -0.158 4.158 11 C -0.155 4.155 12 C -0.147 4.147 13 N -0.335 5.335 14 C 0.297 3.703 15 O -0.416 6.416 16 C 0.279 3.721 17 O -0.428 6.428 18 N -0.340 5.340 19 C 0.019 3.981 20 C -0.055 4.055 21 C -0.575 4.575 22 H 0.054 0.946 23 C -0.190 4.190 24 N -0.587 5.587 25 Si 0.776 3.224 26 H -0.190 1.190 27 H -0.211 1.211 28 H -0.165 1.165 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.255 0.745 48 H 0.255 0.745 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.054 0.946 52 H 0.053 0.947 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.351 -4.226 36.064 37.259 hybrid contribution 0.278 0.373 -0.845 0.964 sum -8.073 -3.853 35.220 36.338 Atomic orbital electron populations 1.22030 0.93853 1.02788 1.02583 1.21395 0.95710 0.96987 0.82159 0.87635 1.22809 0.97815 0.84343 0.96961 1.87873 1.70577 1.26521 1.46766 1.22653 0.98475 0.91681 0.88265 1.21113 1.00487 0.92667 0.95679 1.21500 0.99874 0.95525 0.97954 1.21548 1.00441 0.95999 0.98007 1.21552 1.01140 0.98597 0.94483 1.21499 1.00260 0.95628 0.98080 1.21486 1.01088 0.95750 0.96330 1.45870 1.63978 1.15272 1.08391 1.19904 0.79008 0.86632 0.84802 1.90739 1.50014 1.15831 1.85016 1.20430 0.79557 0.86927 0.85200 1.90741 1.50307 1.16355 1.85428 1.45976 1.63718 1.15301 1.08984 1.21276 0.98602 0.95568 0.82672 1.19692 0.97940 0.95624 0.92215 1.21196 1.44496 0.97311 0.94495 0.94622 1.25995 0.94195 1.03928 0.94872 1.70059 1.47823 1.39122 1.01689 0.85620 0.80018 0.78716 0.78060 1.19035 1.21105 1.16469 0.91900 0.89332 0.93897 0.88975 0.91881 0.91754 0.92927 0.91146 0.92877 0.92372 0.92625 0.92367 0.92064 0.91822 0.91002 0.92085 0.91581 0.90762 0.74473 0.74548 0.92256 0.92379 0.94635 0.94677 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.29 71.98 0.67 -1.82 16 2 C 0.14 2.26 2.98 44.99 0.13 2.40 16 3 H 0.11 1.71 7.58 -2.39 -0.02 1.69 16 4 C 0.06 0.65 5.68 71.98 0.41 1.06 16 5 O -0.40 -5.60 8.73 -148.98 -1.30 -6.90 16 6 C 0.07 0.69 5.32 71.98 0.38 1.08 16 7 C -0.08 -0.94 2.43 -10.79 -0.03 -0.96 16 8 C -0.11 -1.64 5.10 30.59 0.16 -1.49 16 9 C -0.12 -1.72 5.92 30.60 0.18 -1.54 16 10 C -0.12 -1.34 5.92 30.60 0.18 -1.16 16 11 C -0.12 -1.07 5.92 30.58 0.18 -0.89 16 12 C -0.11 -0.94 5.20 30.58 0.16 -0.78 16 13 N -0.68 -14.84 5.05 -443.86 -2.24 -17.09 16 14 C 0.52 14.39 7.85 87.27 0.69 15.08 16 15 O -0.54 -16.41 16.14 -3.23 -0.05 -16.46 16 16 C 0.50 16.44 7.89 87.27 0.69 17.13 16 17 O -0.55 -20.62 16.48 -3.26 -0.05 -20.68 16 18 N -0.69 -23.33 5.55 -464.41 -2.58 -25.91 16 19 C 0.14 5.73 5.61 86.38 0.48 6.22 16 20 C -0.02 -0.76 4.15 29.84 0.12 -0.64 16 21 C -0.54 -30.46 9.66 25.60 0.25 -30.22 16 22 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 23 C 0.01 0.44 5.47 84.65 0.46 0.90 16 24 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 25 Si 0.95 43.00 27.47 68.60 1.88 44.88 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 28 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 29 H 0.06 1.11 7.56 -2.39 -0.02 1.09 16 30 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 0.98 7.82 -2.39 -0.02 0.97 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.42 9.10 7.85 -92.70 -0.73 8.37 16 48 H 0.42 12.76 7.94 -92.71 -0.74 12.02 16 49 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 50 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 51 H 0.04 1.53 7.20 -2.38 -0.02 1.52 16 52 H 0.03 1.49 7.57 -2.38 -0.02 1.47 16 53 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -69.03 424.91 0.44 -68.59 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.63 Total: 27.74 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 5.12 Total: 4.37 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -4.52 Total: -101.54 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.41 Total: -44.04 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.88 kcal Total: -69.03 0.44 -68.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351603133.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.405 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds