Wall clock time and date at job start Sat Apr 11 2020 06:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00265 * 2 1 4 4 C 1.53005 * 109.54124 * 59.45103 * 3 2 1 5 5 H 1.08997 * 109.47073 * 170.43242 * 4 3 2 6 6 C 1.52993 * 109.47326 * 50.42794 * 4 3 2 7 7 N 1.46498 * 109.47021 * 290.42793 * 4 3 2 8 8 C 1.34777 * 120.00288 * 193.84702 * 7 4 3 9 9 O 1.21586 * 119.99631 * 5.21351 * 8 7 4 10 10 N 1.34773 * 120.00230 * 185.22039 * 8 7 4 11 11 C 1.46929 * 120.62915 * 4.84860 * 10 8 7 12 12 C 1.52760 * 109.00608 * 233.58488 * 11 10 8 13 13 C 1.53038 * 109.38581 * 305.58912 * 12 11 10 14 14 C 1.50706 * 109.44776 * 181.25581 * 13 12 11 15 15 H 1.08007 * 119.99690 * 239.93544 * 14 13 12 16 16 C 1.37873 * 120.00093 * 59.94182 * 14 13 12 17 17 N 1.31513 * 120.00392 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99678 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47598 * 59.99970 * 18 16 14 20 20 H 1.48507 * 109.46918 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47434 * 299.99463 * 18 16 14 22 22 C 1.53032 * 109.53826 * 61.24350 * 13 12 11 23 23 C 1.46927 * 120.63089 * 185.13291 * 10 8 7 24 24 C 1.53175 * 109.54651 * 299.18064 * 3 2 1 25 25 C 1.53088 * 109.16261 * 297.11696 * 24 3 2 26 26 O 1.42898 * 109.41389 * 302.38634 * 25 24 3 27 27 C 1.42903 * 114.09928 * 61.16065 * 26 25 24 28 28 C 1.53092 * 109.41466 * 298.84122 * 27 26 25 29 29 H 1.09005 * 109.47000 * 52.53659 * 1 2 3 30 30 H 1.09007 * 109.47726 * 172.53161 * 1 2 3 31 31 H 1.09001 * 109.47619 * 292.53477 * 1 2 3 32 32 H 1.09001 * 109.47076 * 179.97438 * 6 4 3 33 33 H 1.08997 * 109.47411 * 300.00241 * 6 4 3 34 34 H 1.09004 * 109.47327 * 59.99958 * 6 4 3 35 35 H 0.97007 * 120.00108 * 13.84433 * 7 4 3 36 36 H 1.09001 * 109.58803 * 353.42144 * 11 10 8 37 37 H 1.09001 * 109.58547 * 113.84670 * 11 10 8 38 38 H 1.09006 * 109.56513 * 185.55485 * 12 11 10 39 39 H 1.09001 * 109.38965 * 65.52100 * 12 11 10 40 40 H 1.09000 * 109.46120 * 301.22072 * 13 12 11 41 41 H 0.96993 * 120.00524 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.50052 * 178.68701 * 22 13 12 43 43 H 1.08996 * 109.52718 * 58.59870 * 22 13 12 44 44 H 1.08999 * 109.58543 * 246.15279 * 23 10 8 45 45 H 1.08994 * 109.58510 * 6.42991 * 23 10 8 46 46 H 1.09006 * 109.51715 * 57.01817 * 24 3 2 47 47 H 1.08999 * 109.52690 * 177.20356 * 24 3 2 48 48 H 1.09003 * 109.48265 * 182.40459 * 25 24 3 49 49 H 1.08996 * 109.48603 * 62.37243 * 25 24 3 50 50 H 1.09001 * 109.48417 * 178.85851 * 27 26 25 51 51 H 1.09000 * 109.49088 * 58.83019 * 27 26 25 52 52 H 1.08997 * 109.52273 * 297.70469 * 28 27 26 53 53 H 1.08998 * 109.52379 * 177.50891 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5489 2.0710 1.2418 5 1 2.1196 2.9953 1.3316 6 6 1.7749 1.2092 2.4855 7 7 0.1237 2.3871 1.1191 8 6 -0.4403 3.2890 1.9467 9 8 0.2508 3.9095 2.7313 10 7 -1.7703 3.5029 1.9048 11 6 -2.6327 2.6873 1.0388 12 6 -3.4603 3.6120 0.1480 13 6 -4.2157 4.6164 1.0214 14 6 -5.0566 5.5096 0.1461 15 1 -4.8932 6.5773 0.1489 16 6 -6.0345 4.9640 -0.6582 17 7 -6.2332 3.6640 -0.6619 18 14 -7.0773 6.0713 -1.7425 19 1 -6.2002 6.8037 -2.6910 20 1 -8.0487 5.2457 -2.5041 21 1 -7.8118 7.0447 -0.8950 22 6 -3.2143 5.4674 1.8056 23 6 -2.3846 4.5601 2.7194 24 6 1.5758 2.0598 -1.2603 25 6 2.1089 1.3265 -2.4938 26 8 3.5315 1.2230 -2.4069 27 6 3.9948 0.4868 -1.2732 28 6 3.5374 1.1863 0.0095 29 1 -0.3633 0.6251 -0.8157 30 1 -0.3635 -1.0190 -0.1336 31 1 -0.3634 0.3938 0.9492 32 1 1.4466 1.7549 3.3702 33 1 1.2042 0.2849 2.3957 34 1 2.8353 0.9740 2.5769 35 1 -0.4141 1.9473 0.4420 36 1 -2.0166 2.0381 0.4167 37 1 -3.3000 2.0826 1.6529 38 1 -4.1735 3.0221 -0.4278 39 1 -2.7979 4.1474 -0.5323 40 1 -4.8599 4.0797 1.7178 41 1 -6.9210 3.2800 -1.2280 42 1 -3.7523 6.1981 2.4097 43 1 -2.5537 5.9857 1.1105 44 1 -3.0312 4.1112 3.4734 45 1 -1.6049 5.1444 3.2079 46 1 0.4873 2.1009 -1.3031 47 1 1.9787 3.0723 -1.2359 48 1 1.8391 1.8821 -3.3919 49 1 1.6740 0.3281 -2.5395 50 1 5.0835 0.4374 -1.2919 51 1 3.5847 -0.5227 -1.3027 52 1 3.9800 2.1811 0.0595 53 1 3.8518 0.6027 0.8747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365649148.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:49 Heat of formation + Delta-G solvation = -122.772325 kcal Electronic energy + Delta-G solvation = -32729.276184 eV Core-core repulsion = 28600.990118 eV Total energy + Delta-G solvation = -4128.286066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.22356 -40.89101 -38.83451 -38.27049 -35.88118 -35.37661 -34.00672 -32.84299 -32.31856 -31.75354 -30.67624 -28.17569 -27.77177 -26.33320 -24.75370 -24.42701 -24.00660 -22.79872 -21.68514 -21.27499 -20.25206 -19.18139 -18.30753 -17.72768 -17.45866 -16.95967 -16.83386 -16.72135 -16.51840 -16.45606 -16.06307 -15.45024 -15.41728 -15.14985 -14.92991 -14.68771 -14.35844 -14.26466 -14.19200 -13.82779 -13.71418 -13.53290 -13.41612 -13.23722 -13.15129 -12.81799 -12.74604 -12.71799 -12.49069 -12.28528 -12.16790 -12.10904 -12.00475 -11.68850 -11.48212 -11.35482 -11.17741 -11.01615 -10.82165 -10.76615 -10.40761 -10.32492 -10.21380 -9.43029 -8.08034 -6.20810 1.42603 1.43701 1.50509 1.63479 2.10311 2.44113 2.62567 2.81813 2.95810 3.18556 3.40056 3.55532 3.67962 3.97161 4.00716 4.14760 4.20201 4.23874 4.27667 4.30098 4.33331 4.37268 4.42768 4.44433 4.54585 4.58084 4.58818 4.64519 4.68302 4.76199 4.78988 4.82751 4.86482 4.92208 4.97071 5.01388 5.03678 5.16938 5.19228 5.21381 5.26866 5.41112 5.45383 5.50038 5.64574 5.94654 5.99250 6.08075 6.12035 6.25147 6.39130 6.87512 6.89486 7.46767 7.50913 8.95077 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.003147 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.373835 B = 8895.343866 C = 9948.491058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.368 6.368 3 C 0.117 3.883 4 C 0.141 3.859 5 H 0.075 0.925 6 C -0.152 4.152 7 N -0.741 5.741 8 C 0.702 3.298 9 O -0.630 6.630 10 N -0.622 5.622 11 C 0.122 3.878 12 C -0.114 4.114 13 C 0.048 3.952 14 C -0.535 4.535 15 H 0.046 0.954 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 0.946 3.054 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.276 1.276 22 C -0.114 4.114 23 C 0.136 3.864 24 C -0.182 4.182 25 C 0.068 3.932 26 O -0.399 6.399 27 C 0.062 3.938 28 C -0.136 4.136 29 H 0.050 0.950 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.404 0.596 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.005 0.995 41 H 0.262 0.738 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.101 0.899 49 H 0.060 0.940 50 H 0.114 0.886 51 H 0.060 0.940 52 H 0.090 0.910 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.526 -10.706 -0.356 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.286 6.286 3 C 0.076 3.924 4 C 0.036 3.964 5 H 0.093 0.907 6 C -0.210 4.210 7 N -0.405 5.405 8 C 0.404 3.596 9 O -0.512 6.512 10 N -0.358 5.358 11 C -0.001 4.001 12 C -0.153 4.153 13 C 0.029 3.971 14 C -0.574 4.574 15 H 0.064 0.936 16 C -0.179 4.179 17 N -0.549 5.549 18 Si 0.773 3.227 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.201 1.201 22 C -0.152 4.152 23 C 0.013 3.987 24 C -0.220 4.220 25 C -0.009 4.009 26 O -0.318 6.318 27 C -0.014 4.014 28 C -0.174 4.174 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.248 0.752 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.023 0.977 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.119 0.881 49 H 0.078 0.922 50 H 0.132 0.868 51 H 0.078 0.922 52 H 0.109 0.891 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.120 -10.511 -0.013 20.948 hybrid contribution -1.803 0.833 -0.634 2.085 sum 16.317 -9.679 -0.646 18.982 Atomic orbital electron populations 1.23375 0.81286 1.04686 1.00538 1.87951 1.19801 1.26203 1.94672 1.21754 0.95442 0.83289 0.91879 1.21455 0.80208 0.98533 0.96240 0.90678 1.22063 1.03300 0.99391 0.96259 1.46085 1.11271 1.45414 1.37700 1.16040 0.81819 0.80265 0.81466 1.90823 1.62244 1.54098 1.43998 1.47418 1.04740 1.37278 1.46395 1.21667 0.92785 0.93056 0.92566 1.21715 0.97314 0.98253 0.97980 1.18570 0.91963 0.93194 0.93345 1.21509 1.17678 0.93547 1.24618 0.93572 1.25587 0.98042 0.96233 0.98022 1.69916 1.33499 1.11118 1.40384 0.85799 0.78751 0.79091 0.79089 1.20132 1.20788 1.20120 1.21878 0.97432 0.97947 0.97980 1.21457 0.96198 0.88459 0.92575 1.22764 1.02071 1.00933 0.96218 1.22509 0.80984 1.00088 0.97273 1.87905 1.21716 1.75724 1.46500 1.22670 1.00646 0.94391 0.83682 1.22231 0.90533 1.03744 1.00872 0.93120 0.87238 0.93077 0.94028 0.91712 0.89563 0.75249 0.90260 0.91363 0.89950 0.95454 0.97706 0.92890 0.91685 0.94112 0.91354 0.90232 0.90752 0.90394 0.88132 0.92174 0.86848 0.92203 0.89117 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 8.82 113.37 1.00 0.95 16 2 O -0.37 -6.75 8.41 -148.98 -1.25 -8.00 16 3 C 0.12 2.16 0.37 -10.67 0.00 2.16 16 4 C 0.14 3.24 1.74 44.99 0.08 3.32 16 5 H 0.08 1.97 7.84 -2.39 -0.02 1.95 16 6 C -0.15 -3.31 8.78 71.98 0.63 -2.67 16 7 N -0.74 -19.83 3.34 -457.83 -1.53 -21.36 16 8 C 0.70 24.28 8.04 179.06 1.44 25.72 16 9 O -0.63 -25.47 14.97 -3.99 -0.06 -25.53 16 10 N -0.62 -21.77 2.98 -837.74 -2.50 -24.27 16 11 C 0.12 4.09 6.40 86.22 0.55 4.64 16 12 C -0.11 -4.84 5.14 30.53 0.16 -4.69 16 13 C 0.05 2.25 2.07 -11.51 -0.02 2.22 16 14 C -0.54 -28.34 8.56 25.60 0.22 -28.12 16 15 H 0.05 2.45 7.74 -2.91 -0.02 2.43 16 16 C 0.02 1.07 5.30 84.65 0.45 1.52 16 17 N -0.91 -48.87 11.30 21.45 0.24 -48.62 16 18 Si 0.95 42.08 29.54 68.60 2.03 44.10 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 C -0.11 -4.63 5.30 30.67 0.16 -4.47 16 23 C 0.14 4.92 6.42 86.36 0.55 5.47 16 24 C -0.18 -3.54 4.35 30.68 0.13 -3.41 16 25 C 0.07 1.23 6.69 72.01 0.48 1.71 16 26 O -0.40 -7.90 10.77 -148.98 -1.60 -9.51 16 27 C 0.06 0.93 6.69 72.01 0.48 1.41 16 28 C -0.14 -2.04 4.90 30.69 0.15 -1.89 16 29 H 0.05 0.84 5.52 -2.38 -0.01 0.83 16 30 H 0.11 1.49 8.14 -2.38 -0.02 1.48 16 31 H 0.05 1.00 4.99 -2.39 -0.01 0.98 16 32 H 0.04 1.12 7.43 -2.39 -0.02 1.10 16 33 H 0.06 1.36 6.52 -2.39 -0.02 1.35 16 34 H 0.09 1.46 6.82 -2.39 -0.02 1.45 16 35 H 0.40 9.68 1.53 -92.70 -0.14 9.54 16 36 H 0.08 2.17 5.58 -2.39 -0.01 2.15 16 37 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.08 3.91 6.03 -2.38 -0.01 3.89 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 42 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.08 2.89 7.03 -2.39 -0.02 2.88 16 46 H 0.07 1.50 5.23 -2.38 -0.01 1.48 16 47 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.06 1.04 7.82 -2.39 -0.02 1.02 16 50 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.06 0.90 7.82 -2.39 -0.02 0.88 16 52 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 53 H 0.10 1.24 6.89 -2.39 -0.02 1.22 16 Total: -1.00 -62.88 384.86 2.56 -60.32 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.77 Total: 28.98 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 6.46 Total: 3.88 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -3.78 Total: -94.25 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -2.92 Total: -43.03 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -62.88 2.56 -60.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365649148.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.455 kcal (2) G-P(sol) polarization free energy of solvation -62.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds