Wall clock time and date at job start Sat Apr 11 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47219 * 2 1 4 4 C 1.50699 * 109.47222 * 240.00350 * 2 1 3 5 5 H 1.08005 * 120.00217 * 245.64493 * 4 2 1 6 6 C 1.37877 * 119.99998 * 65.64629 * 4 2 1 7 7 N 1.31521 * 120.00277 * 197.45316 * 6 4 2 8 8 Si 1.86799 * 120.00040 * 17.45261 * 6 4 2 9 9 H 1.48502 * 109.47176 * 180.02562 * 8 6 4 10 10 H 1.48496 * 109.47386 * 299.99945 * 8 6 4 11 11 H 1.48499 * 109.47314 * 60.00370 * 8 6 4 12 12 C 1.50702 * 109.47083 * 120.00343 * 2 1 3 13 13 O 1.21282 * 119.99795 * 120.00521 * 12 2 1 14 14 N 1.34772 * 119.99715 * 299.99696 * 12 2 1 15 15 C 1.46508 * 119.99837 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47247 * 180.02562 * 15 14 12 17 17 H 1.09012 * 110.43006 * 307.53899 * 16 15 14 18 18 C 1.54890 * 110.49037 * 70.22144 * 16 15 14 19 19 C 1.54889 * 102.74879 * 156.62184 * 18 16 15 20 20 C 1.54272 * 104.19531 * 322.06101 * 19 18 16 21 21 H 1.09002 * 110.03079 * 142.89316 * 20 19 18 22 22 N 1.46499 * 110.03177 * 264.32361 * 20 19 18 23 23 C 1.34774 * 120.00150 * 272.16804 * 22 20 19 24 24 O 1.21518 * 119.99961 * 359.97438 * 23 22 20 25 25 O 1.34633 * 120.00228 * 179.97438 * 23 22 20 26 26 C 1.45197 * 117.00349 * 180.02562 * 25 23 22 27 27 C 1.52998 * 109.47305 * 59.99676 * 26 25 23 28 28 C 1.52998 * 109.47650 * 180.02562 * 26 25 23 29 29 C 1.53007 * 109.46848 * 300.00184 * 26 25 23 30 30 C 1.53868 * 106.59895 * 23.60949 * 20 19 18 31 31 H 1.09001 * 109.47308 * 306.34542 * 1 2 3 32 32 H 1.09005 * 109.47547 * 66.34491 * 1 2 3 33 33 H 1.09000 * 109.47276 * 186.34299 * 1 2 3 34 34 H 0.97000 * 119.99703 * 354.94771 * 7 6 4 35 35 H 0.96999 * 120.00754 * 0.02562 * 14 12 2 36 36 H 1.09002 * 109.46568 * 300.00375 * 15 14 12 37 37 H 1.08999 * 109.46658 * 60.00264 * 15 14 12 38 38 H 1.09000 * 110.75715 * 274.93821 * 18 16 15 39 39 H 1.08999 * 110.75387 * 38.30689 * 18 16 15 40 40 H 1.08996 * 110.48691 * 203.37852 * 19 18 16 41 41 H 1.08996 * 110.48680 * 80.73679 * 19 18 16 42 42 H 0.97003 * 119.99929 * 92.16217 * 22 20 19 43 43 H 1.08998 * 109.47010 * 60.00412 * 27 26 25 44 44 H 1.09001 * 109.47123 * 180.02562 * 27 26 25 45 45 H 1.08993 * 109.47651 * 300.00106 * 27 26 25 46 46 H 1.09011 * 109.46873 * 59.99381 * 28 26 25 47 47 H 1.08994 * 109.47848 * 179.97438 * 28 26 25 48 48 H 1.09003 * 109.46988 * 300.00125 * 28 26 25 49 49 H 1.08994 * 109.47367 * 59.99592 * 29 26 25 50 50 H 1.09001 * 109.47217 * 179.97438 * 29 26 25 51 51 H 1.08999 * 109.47025 * 299.99694 * 29 26 25 52 52 H 1.09001 * 110.03668 * 240.71744 * 30 20 19 53 53 H 1.09005 * 110.07331 * 119.30496 * 30 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5760 -1.6386 -1.1341 6 6 1.7979 -0.1752 -2.4794 7 7 1.9175 -0.9287 -3.5507 8 14 1.3103 1.6199 -2.6499 9 1 1.1166 1.9461 -4.0856 10 1 0.0439 1.8611 -1.9128 11 1 2.3822 2.4797 -2.0867 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1955 -0.9404 3.6507 16 6 1.6849 -0.2197 4.8999 17 1 1.9253 0.8425 4.8514 18 6 0.1581 -0.4261 5.0591 19 6 -0.0614 -0.1984 6.5753 20 6 1.1766 -0.8383 7.2371 21 1 1.4900 -0.2442 8.0956 22 7 0.8690 -2.2071 7.6588 23 6 0.3370 -2.4338 8.8761 24 8 0.1129 -1.5028 9.6242 25 8 0.0538 -3.6918 9.2634 26 6 -0.5180 -3.8610 10.5873 27 6 -1.8407 -3.0969 10.6732 28 6 -0.7694 -5.3475 10.8482 29 6 0.4542 -3.3170 11.6361 30 6 2.2868 -0.8518 6.1719 31 1 -0.3634 0.6090 0.8277 32 1 -0.3634 0.4123 -0.9413 33 1 -0.3634 -1.0214 0.1135 34 1 2.2412 -1.8395 -3.4694 35 1 1.1488 0.5384 2.5436 36 1 1.8325 -1.9682 3.6507 37 1 3.2855 -0.9399 3.6505 38 1 -0.3942 0.3092 4.4740 39 1 -0.1262 -1.4395 4.7755 40 1 -0.9721 -0.6963 6.9080 41 1 -0.1050 0.8676 6.7986 42 1 1.0481 -2.9504 7.0617 43 1 -2.5333 -3.4844 9.9261 44 1 -2.2697 -3.2236 11.6672 45 1 -1.6613 -2.0379 10.4876 46 1 0.1733 -5.8916 10.7871 47 1 -1.1982 -5.4746 11.8421 48 1 -1.4618 -5.7355 10.1010 49 1 0.6337 -2.2581 11.4504 50 1 0.0249 -3.4436 12.6299 51 1 1.3966 -3.8614 11.5749 52 1 2.5968 -1.8768 5.9685 53 1 3.1397 -0.2647 6.5129 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434379811.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:59 Heat of formation + Delta-G solvation = -170.416607 kcal Electronic energy + Delta-G solvation = -30075.356851 eV Core-core repulsion = 25945.004774 eV Total energy + Delta-G solvation = -4130.352077 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87017 -40.78186 -39.77603 -37.93459 -35.98854 -35.75905 -35.16928 -34.05241 -33.06302 -30.45084 -29.21406 -28.35608 -28.29774 -26.77328 -25.94236 -23.83336 -23.72300 -21.62592 -21.28545 -20.96079 -20.51159 -19.47555 -19.16267 -17.91122 -17.69045 -17.31802 -17.05793 -16.53972 -16.37277 -15.90602 -15.75561 -15.51283 -15.28896 -15.17422 -14.65754 -14.50920 -14.37474 -14.32168 -13.84310 -13.53947 -13.37342 -13.34526 -13.29577 -12.90847 -12.88800 -12.86549 -12.84056 -12.68060 -12.36736 -12.33884 -12.28746 -12.08897 -11.93824 -11.87503 -11.73167 -11.57002 -11.54481 -11.37853 -11.07550 -10.97214 -10.58458 -10.29534 -10.16853 -9.95930 -8.76139 -6.34557 1.20586 1.49797 1.60581 1.77095 1.77296 1.89414 2.42504 2.55772 3.10501 3.17442 3.45859 3.58504 3.75451 3.80573 3.83394 3.95321 4.20522 4.26445 4.33112 4.44570 4.49531 4.50097 4.53363 4.55045 4.61665 4.61988 4.70814 4.72228 4.76837 4.81363 4.84460 4.85779 4.87865 4.92946 4.97014 5.06013 5.12069 5.16054 5.19232 5.27317 5.28408 5.32456 5.42066 5.48389 5.55927 5.61903 5.63789 5.89294 6.07099 6.41158 6.62922 6.79612 7.35784 7.43944 7.54283 8.64521 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.001798 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.427054 B =15573.409302 C =15755.540470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.007 4.007 3 H 0.068 0.932 4 C -0.599 4.599 5 H 0.012 0.988 6 C -0.028 4.028 7 N -0.939 5.939 8 Si 1.089 2.911 9 H -0.294 1.294 10 H -0.224 1.224 11 H -0.260 1.260 12 C 0.522 3.478 13 O -0.595 6.595 14 N -0.719 5.719 15 C 0.127 3.873 16 C -0.089 4.089 17 H 0.105 0.895 18 C -0.118 4.118 19 C -0.127 4.127 20 C 0.161 3.839 21 H 0.090 0.910 22 N -0.697 5.697 23 C 0.645 3.355 24 O -0.591 6.591 25 O -0.374 6.374 26 C 0.124 3.876 27 C -0.179 4.179 28 C -0.137 4.137 29 C -0.178 4.178 30 C -0.117 4.117 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.246 0.754 35 H 0.414 0.586 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.412 0.588 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.102 0.898 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.089 0.911 51 H 0.060 0.940 52 H 0.079 0.921 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 1.451 33.912 34.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.086 0.914 4 C -0.637 4.637 5 H 0.030 0.970 6 C -0.224 4.224 7 N -0.576 5.576 8 Si 0.908 3.092 9 H -0.220 1.220 10 H -0.147 1.147 11 H -0.185 1.185 12 C 0.311 3.689 13 O -0.475 6.475 14 N -0.373 5.373 15 C 0.003 3.997 16 C -0.108 4.108 17 H 0.123 0.877 18 C -0.156 4.156 19 C -0.166 4.166 20 C 0.058 3.942 21 H 0.108 0.892 22 N -0.357 5.357 23 C 0.398 3.602 24 O -0.482 6.482 25 O -0.289 6.289 26 C 0.088 3.912 27 C -0.236 4.236 28 C -0.194 4.194 29 C -0.236 4.236 30 C -0.155 4.155 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.251 0.749 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.248 0.752 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.120 0.880 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.108 0.892 51 H 0.079 0.921 52 H 0.097 0.903 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.801 2.265 33.209 34.188 hybrid contribution 0.815 -2.091 0.288 2.263 sum -6.986 0.173 33.498 34.219 Atomic orbital electron populations 1.22041 0.94209 1.00731 1.02405 1.19194 0.95723 0.97209 0.90713 0.91388 1.22065 1.39621 1.08977 0.93026 0.97008 1.27578 0.94158 1.09288 0.91387 1.71000 1.44513 1.09288 1.32752 0.83588 0.79595 0.69350 0.76667 1.22017 1.14711 1.18508 1.21233 0.78341 0.83652 0.85697 1.90547 1.40205 1.29110 1.87594 1.45921 1.54190 1.32635 1.04518 1.21399 0.98479 0.95923 0.83880 1.22168 0.95745 1.01130 0.91778 0.87721 1.22601 0.94862 1.02147 0.95940 1.22747 0.97082 1.01756 0.94979 1.21636 0.95075 0.80101 0.97430 0.89197 1.45075 1.65516 1.10773 1.14339 1.18318 0.77133 0.81748 0.82972 1.90885 1.58689 1.44381 1.54252 1.86323 1.76538 1.28099 1.37905 1.22388 0.93047 0.98153 0.77590 1.22460 0.95736 1.01630 1.03763 1.21892 1.03204 0.90634 1.03716 1.22463 0.99230 1.02569 0.99292 1.22409 0.97585 1.02822 0.92731 0.89933 0.92392 0.94997 0.94541 0.74927 0.93235 0.92940 0.89997 0.92173 0.92409 0.89219 0.75174 0.92256 0.89183 0.91727 0.91333 0.87979 0.91465 0.91730 0.89196 0.92098 0.90259 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 8.72 71.98 0.63 -4.49 16 2 C -0.01 -0.30 2.22 -12.29 -0.03 -0.32 16 3 H 0.07 2.77 6.80 -2.39 -0.02 2.75 16 4 C -0.60 -35.70 8.63 25.60 0.22 -35.48 16 5 H 0.01 0.82 7.02 -2.91 -0.02 0.80 16 6 C -0.03 -1.64 5.29 84.65 0.45 -1.19 16 7 N -0.94 -60.85 13.70 21.45 0.29 -60.56 16 8 Si 1.09 47.31 26.29 68.60 1.80 49.11 16 9 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 10 H -0.22 -7.93 5.76 99.48 0.57 -7.36 16 11 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 12 C 0.52 22.54 7.15 87.66 0.63 23.17 16 13 O -0.59 -32.22 15.47 -3.03 -0.05 -32.27 16 14 N -0.72 -20.64 5.35 -463.06 -2.48 -23.12 16 15 C 0.13 3.02 4.96 86.38 0.43 3.45 16 16 C -0.09 -1.28 2.89 -9.72 -0.03 -1.30 16 17 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 18 C -0.12 -1.67 6.19 31.89 0.20 -1.47 16 19 C -0.13 -1.76 6.54 31.67 0.21 -1.55 16 20 C 0.16 2.26 3.25 45.72 0.15 2.41 16 21 H 0.09 1.42 7.57 -2.39 -0.02 1.40 16 22 N -0.70 -11.17 5.03 -566.67 -2.85 -14.02 16 23 C 0.64 13.22 8.05 129.79 1.05 14.27 16 24 O -0.59 -14.47 11.54 19.78 0.23 -14.24 16 25 O -0.37 -7.19 9.94 -55.42 -0.55 -7.74 16 26 C 0.12 1.88 1.13 -10.79 -0.01 1.86 16 27 C -0.18 -2.66 8.37 71.98 0.60 -2.06 16 28 C -0.14 -1.34 8.85 71.98 0.64 -0.70 16 29 C -0.18 -2.58 8.37 71.98 0.60 -1.98 16 30 C -0.12 -1.43 6.14 31.32 0.19 -1.24 16 31 H 0.08 2.18 7.75 -2.39 -0.02 2.16 16 32 H 0.06 2.25 4.88 -2.38 -0.01 2.24 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.25 16.55 8.73 -92.71 -0.81 15.74 16 35 H 0.41 8.76 7.98 -92.71 -0.74 8.02 16 36 H 0.05 1.33 8.02 -2.39 -0.02 1.31 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.06 1.02 7.96 -2.39 -0.02 1.00 16 40 H 0.06 0.98 8.04 -2.39 -0.02 0.96 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.41 5.58 8.43 -92.71 -0.78 4.79 16 43 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.06 1.29 5.88 -2.39 -0.01 1.28 16 46 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 1.27 5.88 -2.39 -0.01 1.26 16 50 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.08 1.01 7.31 -2.39 -0.02 0.99 16 53 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -83.60 412.11 1.53 -82.07 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.78 Total: 27.40 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 5.92 Total: -6.63 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -5.04 Total: -97.70 kcal Atomic # 8 Polarization: -53.88 SS G_CDS: -0.37 Total: -54.25 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.80 Total: 49.11 kcal Total: -83.60 1.53 -82.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434379811.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.349 kcal (2) G-P(sol) polarization free energy of solvation -83.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds