Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47035 * 2 1 4 4 C 1.52999 * 109.47195 * 119.99294 * 2 1 3 5 5 C 1.50699 * 109.47378 * 295.00711 * 4 2 1 6 6 O 1.21277 * 119.99869 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99926 * 179.72429 * 5 4 2 8 8 C 1.46503 * 120.00014 * 180.27532 * 7 5 4 9 9 C 1.53006 * 109.47157 * 176.60858 * 8 7 5 10 10 N 1.46500 * 109.54324 * 54.52714 * 9 8 7 11 11 C 1.36939 * 119.99642 * 62.05117 * 10 9 8 12 12 H 1.07999 * 120.00426 * 354.01982 * 11 10 9 13 13 C 1.38817 * 119.99943 * 174.01613 * 11 10 9 14 14 N 1.31615 * 119.99753 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00080 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47536 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47102 * 120.00179 * 15 13 11 18 18 H 1.48499 * 109.47292 * 240.00198 * 15 13 11 19 19 C 1.53174 * 109.53979 * 294.26256 * 9 8 7 20 20 C 1.53098 * 109.16349 * 183.15471 * 19 9 8 21 21 O 1.42900 * 109.41241 * 57.60707 * 20 19 9 22 22 C 1.42904 * 114.09898 * 298.84269 * 21 20 19 23 23 C 1.53093 * 109.41259 * 61.16112 * 22 21 20 24 24 C 1.52997 * 109.47301 * 239.99776 * 2 1 3 25 25 H 1.09003 * 109.82021 * 185.56649 * 24 2 1 26 26 C 1.54385 * 109.83196 * 64.58597 * 24 2 1 27 27 C 1.55299 * 102.25402 * 219.12635 * 26 24 2 28 28 C 1.54954 * 100.93990 * 34.13672 * 27 26 24 29 29 O 1.43240 * 109.83082 * 306.45028 * 24 2 1 30 30 H 1.08999 * 109.46656 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47155 * 300.00327 * 1 2 3 32 32 H 1.09003 * 109.46858 * 60.00780 * 1 2 3 33 33 H 1.08997 * 109.47183 * 174.99823 * 4 2 1 34 34 H 1.09007 * 109.46762 * 55.00664 * 4 2 1 35 35 H 0.97001 * 120.00324 * 0.26884 * 7 5 4 36 36 H 1.09007 * 109.46825 * 296.60407 * 8 7 5 37 37 H 1.08992 * 109.47215 * 56.60436 * 8 7 5 38 38 H 0.96994 * 119.99945 * 242.04518 * 10 9 8 39 39 H 0.97001 * 120.00495 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.52816 * 303.05984 * 19 9 8 41 41 H 1.09001 * 109.52495 * 63.24916 * 19 9 8 42 42 H 1.08998 * 109.47648 * 297.62774 * 20 19 9 43 43 H 1.08998 * 109.49265 * 177.60033 * 20 19 9 44 44 H 1.09002 * 109.48174 * 301.17892 * 22 21 20 45 45 H 1.08994 * 109.48861 * 181.14828 * 22 21 20 46 46 H 1.08999 * 109.51973 * 182.48120 * 23 22 21 47 47 H 1.09005 * 109.57413 * 62.32892 * 23 22 21 48 48 H 1.08995 * 110.84742 * 337.32419 * 26 24 2 49 49 H 1.09008 * 110.84329 * 100.93758 * 26 24 2 50 50 H 1.08998 * 111.12803 * 276.21485 * 27 26 24 51 51 H 1.08994 * 111.12539 * 152.05054 * 27 26 24 52 52 H 1.09007 * 110.30717 * 204.63986 * 28 27 26 53 53 H 1.08993 * 110.39704 * 82.51016 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 8 1.0116 1.0875 2.3632 7 7 1.9800 -0.3943 3.7004 8 6 1.5871 0.3592 4.8938 9 6 2.0184 -0.4073 6.1459 10 7 3.4528 -0.6963 6.0738 11 6 4.3569 0.3313 6.0312 12 1 4.0115 1.3516 5.9533 13 6 5.7174 0.0616 6.0884 14 7 6.1383 -1.1818 6.1829 15 14 6.9507 1.4633 6.0296 16 1 6.2268 2.7555 5.9227 17 1 7.7682 1.4556 7.2693 18 1 7.8376 1.2933 4.8507 19 6 1.2335 -1.7194 6.2390 20 6 1.6138 -2.4417 7.5342 21 8 1.3472 -1.5889 8.6494 22 6 2.0890 -0.3674 8.6404 23 6 1.7277 0.4381 7.3897 24 6 2.0401 -0.7213 -1.2492 25 1 3.1255 -0.8115 -1.2066 26 6 1.6271 0.0639 -2.5127 27 6 1.2542 -1.0745 -3.5010 28 6 0.6557 -2.1230 -2.5296 29 8 1.4473 -2.0224 -1.3351 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 3.1263 -0.7993 1.2057 34 1 1.6055 -1.7197 1.2952 35 1 2.4839 -1.2182 3.7911 36 1 2.0700 1.3364 4.8818 37 1 0.5050 0.4887 4.9018 38 1 3.7621 -1.6154 6.0563 39 1 7.0890 -1.3704 6.2225 40 1 0.1648 -1.5053 6.2417 41 1 1.4772 -2.3511 5.3847 42 1 2.6746 -2.6915 7.5130 43 1 1.0270 -3.3555 7.6269 44 1 3.1560 -0.5902 8.6337 45 1 1.8444 0.2131 9.5299 46 1 2.3248 1.3495 7.3584 47 1 0.6691 0.6968 7.4151 48 1 0.7652 0.6995 -2.3099 49 1 2.4622 0.6512 -2.8946 50 1 2.1395 -1.4645 -4.0032 51 1 0.5105 -0.7393 -4.2238 52 1 0.7381 -3.1232 -2.9549 53 1 -0.3867 -1.8892 -2.3134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484190882.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -151.673647 kcal Electronic energy + Delta-G solvation = -31582.945099 eV Core-core repulsion = 27453.405778 eV Total energy + Delta-G solvation = -4129.539322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.27606 -40.71812 -39.95116 -37.34359 -35.47764 -35.01461 -33.84174 -32.96482 -31.98443 -30.96694 -29.95765 -28.94502 -27.52730 -25.94053 -24.57919 -24.29572 -23.32406 -22.51916 -21.32349 -20.59584 -20.08602 -19.10598 -18.19691 -17.67681 -17.16702 -17.04400 -16.79521 -16.68607 -16.51417 -16.13416 -15.86134 -15.52435 -15.42063 -15.22862 -15.05354 -14.80241 -14.30191 -14.11928 -13.85754 -13.70999 -13.57002 -13.20026 -13.12952 -12.95151 -12.87663 -12.70058 -12.65878 -12.64053 -12.27807 -12.21273 -12.19580 -12.09432 -11.82089 -11.75904 -11.63246 -11.44331 -11.40830 -11.14009 -11.01364 -10.68500 -10.34955 -10.29628 -9.84317 -8.97818 -7.91421 -5.17917 1.43551 1.47818 1.53509 1.77841 2.40373 2.56701 2.97153 3.06991 3.41672 3.61497 3.73104 3.75786 3.88485 3.89335 3.98981 4.03111 4.06774 4.15482 4.22348 4.23990 4.34454 4.41212 4.47173 4.55911 4.60909 4.68981 4.76480 4.79126 4.80097 4.82918 4.86200 4.87948 4.89348 4.92327 4.97480 5.03779 5.08849 5.10428 5.14566 5.21839 5.27517 5.29231 5.32952 5.34062 5.50092 5.60645 5.69268 6.17934 6.30423 6.36234 6.72736 7.38917 7.40042 8.08349 8.35727 9.30812 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.003053 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.703533 B = 9169.369538 C =10544.855465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 H 0.072 0.928 4 C -0.126 4.126 5 C 0.506 3.494 6 O -0.585 6.585 7 N -0.702 5.702 8 C 0.127 3.873 9 C 0.187 3.813 10 N -0.712 5.712 11 C -0.212 4.212 12 H 0.064 0.936 13 C -0.059 4.059 14 N -0.958 5.958 15 Si 0.948 3.052 16 H -0.276 1.276 17 H -0.298 1.298 18 H -0.299 1.299 19 C -0.142 4.142 20 C 0.064 3.936 21 O -0.397 6.397 22 C 0.076 3.924 23 C -0.150 4.150 24 C 0.084 3.916 25 H 0.080 0.920 26 C -0.153 4.153 27 C -0.149 4.149 28 C 0.041 3.959 29 O -0.394 6.394 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.405 0.595 36 H 0.033 0.967 37 H 0.063 0.937 38 H 0.377 0.623 39 H 0.248 0.752 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.112 0.888 44 H 0.035 0.965 45 H 0.099 0.901 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.082 0.918 51 H 0.098 0.902 52 H 0.092 0.908 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.520 -2.730 -14.233 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.090 0.910 4 C -0.166 4.166 5 C 0.294 3.706 6 O -0.466 6.466 7 N -0.352 5.352 8 C 0.001 3.999 9 C 0.097 3.903 10 N -0.353 5.353 11 C -0.344 4.344 12 H 0.082 0.918 13 C -0.253 4.253 14 N -0.609 5.609 15 Si 0.780 3.220 16 H -0.201 1.201 17 H -0.225 1.225 18 H -0.227 1.227 19 C -0.180 4.180 20 C -0.012 4.012 21 O -0.317 6.317 22 C -0.001 4.001 23 C -0.190 4.190 24 C 0.026 3.974 25 H 0.098 0.902 26 C -0.190 4.190 27 C -0.186 4.186 28 C -0.035 4.035 29 O -0.313 6.313 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.241 0.759 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.211 0.789 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.130 0.870 44 H 0.053 0.947 45 H 0.117 0.883 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.109 0.891 50 H 0.100 0.900 51 H 0.116 0.884 52 H 0.110 0.890 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.990 -2.048 -13.982 19.195 hybrid contribution 1.819 0.544 -0.031 1.899 sum -11.171 -1.503 -14.013 17.984 Atomic orbital electron populations 1.21794 0.94462 1.01505 1.01900 1.21196 0.97224 0.98676 0.92757 0.90976 1.21655 1.03089 1.00450 0.91380 1.21157 0.78548 0.85423 0.85484 1.90592 1.42463 1.26317 1.87260 1.45828 1.56311 1.27766 1.05288 1.21601 0.98001 0.94720 0.85621 1.20008 0.84574 0.94022 0.91729 1.42498 0.99541 1.05557 1.87715 1.19221 0.87070 0.88803 1.39339 0.91762 1.25189 0.98383 0.97417 1.04261 1.69755 1.13564 1.18060 1.59543 0.85444 0.80069 0.80102 0.76364 1.20115 1.22532 1.22664 1.22294 1.00632 0.96208 0.98861 1.22581 1.00174 0.93226 0.85235 1.87794 1.66737 1.31237 1.45895 1.22362 0.94979 0.84952 0.97814 1.22424 1.01247 0.99355 0.96000 1.22811 0.97265 0.82903 0.94387 0.90224 1.23241 1.03099 0.98666 0.94017 1.23241 1.02271 0.95068 0.98042 1.23549 0.94943 1.00544 0.84428 1.88406 1.66560 1.32315 1.44058 0.92697 0.93165 0.91964 0.88698 0.87689 0.75867 0.94835 0.91917 0.78905 0.94314 0.89490 0.90141 0.94468 0.87030 0.94655 0.88316 0.92129 0.90470 0.89944 0.89135 0.89951 0.88385 0.88962 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.47 71.98 0.61 -2.74 16 2 C -0.08 -1.92 1.86 -10.79 -0.02 -1.94 16 3 H 0.07 1.92 7.95 -2.38 -0.02 1.90 16 4 C -0.13 -3.34 5.04 29.85 0.15 -3.19 16 5 C 0.51 16.90 7.55 87.66 0.66 17.56 16 6 O -0.58 -22.85 13.97 -3.02 -0.04 -22.89 16 7 N -0.70 -23.49 5.13 -463.06 -2.38 -25.87 16 8 C 0.13 4.50 4.36 86.38 0.38 4.87 16 9 C 0.19 6.48 0.41 3.72 0.00 6.48 16 10 N -0.71 -30.48 3.60 -302.81 -1.09 -31.57 16 11 C -0.21 -10.57 8.67 84.03 0.73 -9.84 16 12 H 0.06 3.27 6.78 -2.91 -0.02 3.25 16 13 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 14 N -0.96 -54.20 13.07 21.65 0.28 -53.92 16 15 Si 0.95 44.90 29.55 68.60 2.03 46.93 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 18 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 19 C -0.14 -4.08 4.80 30.69 0.15 -3.93 16 20 C 0.06 1.94 6.67 72.01 0.48 2.42 16 21 O -0.40 -13.27 10.77 -148.98 -1.60 -14.88 16 22 C 0.08 2.59 6.68 72.01 0.48 3.07 16 23 C -0.15 -5.08 4.78 30.68 0.15 -4.93 16 24 C 0.08 1.68 3.21 31.06 0.10 1.78 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 C -0.15 -2.29 6.36 31.85 0.20 -2.09 16 27 C -0.15 -1.77 7.16 32.05 0.23 -1.54 16 28 C 0.04 0.63 7.71 72.65 0.56 1.19 16 29 O -0.39 -8.46 9.82 -148.98 -1.46 -9.93 16 30 H 0.05 1.28 7.54 -2.39 -0.02 1.26 16 31 H 0.05 1.48 5.95 -2.39 -0.01 1.47 16 32 H 0.06 1.27 6.35 -2.39 -0.02 1.25 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.10 2.58 8.01 -2.38 -0.02 2.56 16 35 H 0.41 13.17 7.43 -92.71 -0.69 12.48 16 36 H 0.03 1.38 7.47 -2.38 -0.02 1.36 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.38 17.43 6.82 -92.71 -0.63 16.80 16 39 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 40 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.08 2.16 7.40 -2.39 -0.02 2.14 16 42 H 0.04 1.30 7.15 -2.39 -0.02 1.28 16 43 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.04 1.45 7.75 -2.39 -0.02 1.43 16 45 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 46 H 0.06 2.24 7.20 -2.39 -0.02 2.22 16 47 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 48 H 0.08 1.25 6.07 -2.39 -0.01 1.23 16 49 H 0.09 1.17 8.14 -2.38 -0.02 1.16 16 50 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 53 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -62.70 402.35 0.64 -62.06 By element: Atomic # 1 Polarization: 46.02 SS G_CDS: -0.41 Total: 45.60 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.32 Total: 4.46 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -3.19 Total: -111.36 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -3.11 Total: -47.69 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -62.70 0.64 -62.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484190882.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.615 kcal (2) G-P(sol) polarization free energy of solvation -62.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds