Wall clock time and date at job start Sat Apr 11 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46772 * 2 1 4 4 C 1.53002 * 109.46869 * 240.00374 * 2 1 3 5 5 C 1.50697 * 109.47416 * 64.99879 * 4 2 1 6 6 O 1.21287 * 119.99744 * 359.72375 * 5 4 2 7 7 N 1.34773 * 120.00510 * 180.02562 * 5 4 2 8 8 C 1.46492 * 120.00387 * 179.72429 * 7 5 4 9 9 C 1.53001 * 109.47277 * 175.90283 * 8 7 5 10 10 N 1.46503 * 109.54284 * 305.05659 * 9 8 7 11 11 C 1.36931 * 120.00143 * 300.58813 * 10 9 8 12 12 H 1.08002 * 120.00038 * 354.06517 * 11 10 9 13 13 C 1.38812 * 120.00017 * 174.06270 * 11 10 9 14 14 N 1.31622 * 120.00067 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00182 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47052 * 60.00266 * 15 13 11 17 17 H 1.48500 * 109.47288 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47550 * 300.00387 * 15 13 11 19 19 C 1.53180 * 109.54683 * 184.79200 * 9 8 7 20 20 C 1.53086 * 109.16805 * 183.15161 * 19 9 8 21 21 O 1.42905 * 109.41501 * 57.60620 * 20 19 9 22 22 C 1.42903 * 114.09819 * 298.84450 * 21 20 19 23 23 C 1.53100 * 109.41563 * 61.15574 * 22 21 20 24 24 C 1.53000 * 109.47370 * 120.00458 * 2 1 3 25 25 H 1.09003 * 110.33161 * 60.69863 * 24 2 1 26 26 C 1.54475 * 110.36928 * 298.44889 * 24 2 1 27 27 C 1.54506 * 104.06405 * 217.18991 * 26 24 2 28 28 C 1.54481 * 104.06204 * 0.02562 * 27 26 24 29 29 O 1.44420 * 110.37196 * 182.95057 * 24 2 1 30 30 H 1.09007 * 109.47088 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46789 * 299.99580 * 1 2 3 32 32 H 1.09004 * 109.47502 * 59.99938 * 1 2 3 33 33 H 1.09003 * 109.47416 * 304.99854 * 4 2 1 34 34 H 1.09003 * 109.47263 * 185.00070 * 4 2 1 35 35 H 0.97006 * 119.99545 * 359.72127 * 7 5 4 36 36 H 1.09000 * 109.47481 * 295.90276 * 8 7 5 37 37 H 1.09005 * 109.47484 * 55.90401 * 8 7 5 38 38 H 0.96998 * 119.99684 * 120.58859 * 10 9 8 39 39 H 0.96995 * 119.99877 * 179.97438 * 14 13 11 40 40 H 1.09005 * 109.51909 * 303.06202 * 19 9 8 41 41 H 1.09007 * 109.52284 * 63.24221 * 19 9 8 42 42 H 1.09001 * 109.48103 * 297.62654 * 20 19 9 43 43 H 1.08994 * 109.49439 * 177.59454 * 20 19 9 44 44 H 1.08991 * 109.48379 * 301.17431 * 22 21 20 45 45 H 1.09004 * 109.49062 * 181.13868 * 22 21 20 46 46 H 1.08993 * 109.52404 * 182.48257 * 23 22 21 47 47 H 1.09004 * 109.57322 * 62.32659 * 23 22 21 48 48 H 1.08994 * 110.51454 * 335.83680 * 26 24 2 49 49 H 1.09007 * 110.51408 * 98.54700 * 26 24 2 50 50 H 1.09002 * 110.51489 * 118.64633 * 27 26 24 51 51 H 1.09002 * 110.51752 * 241.22193 * 27 26 24 52 52 H 1.09004 * 110.37634 * 142.80818 * 28 27 26 53 53 H 1.08999 * 110.37648 * 265.03789 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0069 1.0847 -2.3635 7 7 1.9843 -0.3917 -3.7002 8 6 1.5915 0.3617 -4.8936 9 6 2.1882 -0.3030 -6.1358 10 7 3.6390 -0.4285 -5.9753 11 6 4.4063 0.6899 -5.7867 12 1 3.9574 1.6701 -5.8518 13 6 5.7611 0.5639 -5.5120 14 7 6.3083 -0.6306 -5.4331 15 14 6.8080 2.0895 -5.2555 16 1 6.2793 2.8650 -4.1047 17 1 8.2102 1.6868 -4.9779 18 1 6.7669 2.9297 -6.4792 19 6 1.8793 0.5486 -7.3710 20 6 2.4113 -0.1629 -8.6178 21 8 1.8207 -1.4607 -8.7124 22 6 2.1149 -2.3176 -7.6073 23 6 1.5710 -1.6927 -6.3198 24 6 2.0401 -0.7213 1.2492 25 1 1.6947 -1.7552 1.2571 26 6 1.5689 0.0128 2.5240 27 6 2.7652 -0.1134 3.4937 28 6 3.8178 -0.9083 2.6897 29 8 3.4824 -0.6726 1.3041 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.6053 -1.7198 -1.2953 34 1 3.1263 -0.7995 -1.2057 35 1 2.4913 -1.2137 -3.7907 36 1 0.5046 0.3734 -4.9745 37 1 1.9610 1.3843 -4.8157 38 1 4.0560 -1.3038 -6.0026 39 1 7.2551 -0.7186 -5.2415 40 1 0.8013 0.6830 -7.4604 41 1 2.3617 1.5212 -7.2729 42 1 3.4945 -0.2608 -8.5461 43 1 2.1567 0.4178 -9.5044 44 1 3.1941 -2.4438 -7.5223 45 1 1.6466 -3.2892 -7.7657 46 1 1.8327 -2.3230 -5.4701 47 1 0.4866 -1.6036 -6.3869 48 1 1.3621 1.0607 2.3070 49 1 0.6866 -0.4732 2.9407 50 1 3.1498 0.8722 3.7561 51 1 2.4738 -0.6597 4.3908 52 1 4.8199 -0.5383 2.9067 53 1 3.7484 -1.9713 2.9206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484190883.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:13 Heat of formation + Delta-G solvation = -153.991003 kcal Electronic energy + Delta-G solvation = -31623.459930 eV Core-core repulsion = 27493.820121 eV Total energy + Delta-G solvation = -4129.639810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.22777 -40.63052 -39.94006 -37.35510 -35.76149 -35.03411 -33.84957 -32.96714 -31.98278 -30.96288 -30.01368 -28.63371 -27.49021 -25.93669 -24.59721 -24.32591 -23.39947 -22.42473 -21.30620 -20.90552 -20.10463 -19.11448 -18.19855 -17.34901 -17.16094 -17.00212 -16.79319 -16.67535 -16.41480 -16.19520 -16.12677 -15.82896 -15.39286 -15.28188 -14.73472 -14.61211 -14.38828 -14.24006 -13.92610 -13.74928 -13.64439 -13.18541 -13.16666 -12.93704 -12.84112 -12.78212 -12.69876 -12.54622 -12.27776 -12.24012 -12.14813 -12.10974 -11.78418 -11.72640 -11.67385 -11.49089 -11.43190 -11.12914 -10.95781 -10.69651 -10.60072 -10.32319 -9.83569 -8.97620 -7.92266 -5.17761 1.42574 1.45576 1.48830 1.77596 2.41732 2.55630 2.97126 3.07217 3.41225 3.63547 3.70835 3.75573 3.87696 3.90324 4.00948 4.04676 4.09043 4.14030 4.15783 4.23998 4.37206 4.42233 4.47404 4.49915 4.61376 4.66052 4.70545 4.77057 4.79283 4.79605 4.83372 4.84962 4.88837 4.95257 4.97177 5.03748 5.04974 5.10275 5.16356 5.21179 5.23068 5.28347 5.34076 5.35568 5.44097 5.58870 5.69825 5.99893 6.29944 6.36299 6.72573 7.39252 7.40256 8.08707 8.35384 9.29625 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.003327 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.090839 B = 8414.843143 C =10009.760593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 H 0.051 0.949 4 C -0.128 4.128 5 C 0.506 3.494 6 O -0.586 6.586 7 N -0.699 5.699 8 C 0.128 3.872 9 C 0.187 3.813 10 N -0.712 5.712 11 C -0.214 4.214 12 H 0.062 0.938 13 C -0.058 4.058 14 N -0.957 5.957 15 Si 0.945 3.055 16 H -0.295 1.295 17 H -0.297 1.297 18 H -0.281 1.281 19 C -0.152 4.152 20 C 0.076 3.924 21 O -0.396 6.396 22 C 0.064 3.936 23 C -0.142 4.142 24 C 0.077 3.923 25 H 0.086 0.914 26 C -0.147 4.147 27 C -0.151 4.151 28 C 0.034 3.966 29 O -0.404 6.404 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.405 0.595 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.377 0.623 39 H 0.248 0.752 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.100 0.900 44 H 0.037 0.963 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.067 0.933 49 H 0.099 0.901 50 H 0.071 0.929 51 H 0.098 0.902 52 H 0.090 0.910 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.760 -5.840 11.896 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 H 0.069 0.931 4 C -0.167 4.167 5 C 0.294 3.706 6 O -0.468 6.468 7 N -0.349 5.349 8 C 0.001 3.999 9 C 0.096 3.904 10 N -0.353 5.353 11 C -0.346 4.346 12 H 0.080 0.920 13 C -0.251 4.251 14 N -0.607 5.607 15 Si 0.777 3.223 16 H -0.222 1.222 17 H -0.223 1.223 18 H -0.207 1.207 19 C -0.192 4.192 20 C -0.001 4.001 21 O -0.315 6.315 22 C -0.012 4.012 23 C -0.180 4.180 24 C 0.020 3.980 25 H 0.104 0.896 26 C -0.185 4.185 27 C -0.189 4.189 28 C -0.042 4.042 29 O -0.324 6.324 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.241 0.759 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.211 0.789 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.118 0.882 44 H 0.055 0.945 45 H 0.132 0.868 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.086 0.914 49 H 0.117 0.883 50 H 0.090 0.910 51 H 0.117 0.883 52 H 0.108 0.892 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.100 -4.974 11.647 18.221 hybrid contribution 1.828 0.748 0.360 2.007 sum -11.273 -4.227 12.007 17.003 Atomic orbital electron populations 1.21832 0.92664 1.02636 1.02751 1.20856 0.97143 0.98451 0.91779 0.93073 1.21663 1.02992 1.00655 0.91422 1.21108 0.78543 0.85408 0.85529 1.90589 1.42560 1.26389 1.87263 1.45766 1.55976 1.27826 1.05310 1.21607 0.97761 0.94884 0.85643 1.20039 0.84179 0.94568 0.91628 1.42468 1.00682 1.05956 1.86146 1.19131 0.90257 0.87688 1.37538 0.91980 1.25145 0.98231 0.97785 1.03929 1.69724 1.11424 1.21704 1.57891 0.85643 0.78347 0.80678 0.77638 1.22221 1.22327 1.20731 1.22451 1.01087 0.99628 0.96064 1.22366 0.96549 0.83440 0.97758 1.87803 1.74550 1.24919 1.44273 1.22589 0.99332 0.93761 0.85555 1.22309 1.01409 0.95414 0.98904 1.23172 0.80621 0.99431 0.94760 0.89626 1.22993 0.99458 1.01551 0.94473 1.22945 0.95158 1.01531 0.99265 1.23601 0.99809 1.00154 0.80620 1.89189 1.22146 1.93384 1.27644 0.91155 0.91397 0.92655 0.86523 0.89687 0.75938 0.91711 0.95053 0.78876 0.94315 0.90273 0.92373 0.94629 0.88207 0.94499 0.86844 0.90110 0.89167 0.91446 0.88254 0.91041 0.88309 0.89167 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.72 71.98 0.63 -2.54 16 2 C -0.06 -1.65 1.71 -10.79 -0.02 -1.67 16 3 H 0.05 1.67 7.96 -2.39 -0.02 1.65 16 4 C -0.13 -3.60 5.12 29.85 0.15 -3.45 16 5 C 0.51 17.85 7.55 87.66 0.66 18.51 16 6 O -0.59 -24.11 13.96 -3.05 -0.04 -24.15 16 7 N -0.70 -24.21 5.16 -463.07 -2.39 -26.60 16 8 C 0.13 4.59 4.32 86.38 0.37 4.97 16 9 C 0.19 6.45 0.41 3.72 0.00 6.45 16 10 N -0.71 -30.93 3.77 -302.80 -1.14 -32.07 16 11 C -0.21 -10.95 8.70 84.03 0.73 -10.22 16 12 H 0.06 3.24 6.76 -2.91 -0.02 3.22 16 13 C -0.06 -3.16 5.50 84.86 0.47 -2.70 16 14 N -0.96 -55.02 13.07 21.65 0.28 -54.73 16 15 Si 0.95 46.35 29.55 68.60 2.03 48.38 16 16 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 17 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 19 C -0.15 -5.07 4.82 30.68 0.15 -4.92 16 20 C 0.08 2.51 6.68 72.01 0.48 2.99 16 21 O -0.40 -12.73 10.77 -148.98 -1.60 -14.34 16 22 C 0.06 1.85 6.67 72.02 0.48 2.33 16 23 C -0.14 -3.96 4.80 30.69 0.15 -3.81 16 24 C 0.08 1.66 2.80 31.10 0.09 1.74 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 C -0.15 -2.45 5.57 31.61 0.18 -2.27 16 27 C -0.15 -2.24 7.09 31.61 0.22 -2.02 16 28 C 0.03 0.64 7.63 72.49 0.55 1.20 16 29 O -0.40 -10.86 10.77 -148.98 -1.61 -12.46 16 30 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.07 1.28 7.21 -2.39 -0.02 1.27 16 32 H 0.05 1.58 5.94 -2.39 -0.01 1.56 16 33 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.08 2.71 7.67 -2.39 -0.02 2.69 16 35 H 0.40 13.43 7.31 -92.70 -0.68 12.75 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.03 1.35 7.55 -2.38 -0.02 1.33 16 38 H 0.38 17.64 6.73 -92.71 -0.62 17.01 16 39 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.06 2.14 7.13 -2.38 -0.02 2.12 16 42 H 0.04 1.40 7.75 -2.39 -0.02 1.38 16 43 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 44 H 0.04 1.24 7.09 -2.39 -0.02 1.22 16 45 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.08 2.09 7.20 -2.39 -0.02 2.08 16 47 H 0.09 2.20 8.14 -2.38 -0.02 2.19 16 48 H 0.07 1.26 7.73 -2.39 -0.02 1.25 16 49 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 50 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 53 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -66.46 404.66 0.42 -66.03 By element: Atomic # 1 Polarization: 45.76 SS G_CDS: -0.40 Total: 45.36 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.29 Total: 4.59 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -3.25 Total: -113.41 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -3.25 Total: -50.95 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -66.46 0.42 -66.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484190883.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.957 kcal (2) G-P(sol) polarization free energy of solvation -66.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds