Wall clock time and date at job start Sat Apr 11 2020 06:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47902 * 2 1 4 4 C 1.53002 * 109.47269 * 120.00087 * 2 1 3 5 5 C 1.50700 * 109.47254 * 294.99613 * 4 2 1 6 6 O 1.21280 * 119.99360 * 359.97438 * 5 4 2 7 7 N 1.34768 * 120.00065 * 179.97438 * 5 4 2 8 8 C 1.46508 * 119.99979 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47168 * 177.10312 * 8 7 5 10 10 N 1.46498 * 109.54195 * 54.89766 * 9 8 7 11 11 C 1.36936 * 119.99981 * 59.05519 * 10 9 8 12 12 H 1.08003 * 120.00034 * 5.85478 * 11 10 9 13 13 C 1.38813 * 119.99888 * 185.85518 * 11 10 9 14 14 N 1.31618 * 120.00222 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99855 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47034 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46934 * 120.00248 * 15 13 11 18 18 H 1.48496 * 109.47181 * 239.99823 * 15 13 11 19 19 C 1.53176 * 109.61417 * 175.10840 * 9 8 7 20 20 C 1.53098 * 109.16021 * 176.87885 * 19 9 8 21 21 O 1.42898 * 109.42462 * 302.40841 * 20 19 9 22 22 C 1.42900 * 114.09646 * 61.15419 * 21 20 19 23 23 C 1.53096 * 109.41485 * 298.83806 * 22 21 20 24 24 C 1.53003 * 109.46843 * 239.99875 * 2 1 3 25 25 H 1.09004 * 110.27542 * 300.63851 * 24 2 1 26 26 C 1.54945 * 110.30988 * 62.83623 * 24 2 1 27 27 C 1.55303 * 100.94203 * 155.36202 * 26 24 2 28 28 C 1.54382 * 102.25248 * 325.86320 * 27 26 24 29 29 O 1.43236 * 107.58695 * 21.36239 * 28 27 26 30 30 H 1.08994 * 109.47421 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46853 * 300.00259 * 1 2 3 32 32 H 1.08996 * 109.47087 * 59.99483 * 1 2 3 33 33 H 1.09004 * 109.47112 * 174.99430 * 4 2 1 34 34 H 1.08998 * 109.46904 * 54.99830 * 4 2 1 35 35 H 0.96995 * 120.00396 * 0.02562 * 7 5 4 36 36 H 1.08995 * 109.46985 * 57.10039 * 8 7 5 37 37 H 1.09000 * 109.46826 * 297.10522 * 8 7 5 38 38 H 0.96994 * 120.00358 * 239.04965 * 10 9 8 39 39 H 0.97001 * 120.00065 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.51636 * 56.98036 * 19 9 8 41 41 H 1.08997 * 109.53601 * 296.78781 * 19 9 8 42 42 H 1.09002 * 109.48027 * 182.41993 * 20 19 9 43 43 H 1.08994 * 109.48115 * 62.39830 * 20 19 9 44 44 H 1.09000 * 109.48596 * 58.82561 * 22 21 20 45 45 H 1.09006 * 109.48383 * 178.84651 * 22 21 20 46 46 H 1.09007 * 109.52237 * 177.51432 * 23 22 21 47 47 H 1.09003 * 109.52477 * 297.70482 * 23 22 21 48 48 H 1.09000 * 111.12236 * 273.27840 * 26 24 2 49 49 H 1.09001 * 111.12289 * 37.44066 * 26 24 2 50 50 H 1.09005 * 110.84897 * 207.67910 * 27 26 24 51 51 H 1.08995 * 111.02596 * 84.13208 * 27 26 24 52 52 H 1.09001 * 109.83728 * 261.84699 * 28 27 26 53 53 H 1.09007 * 109.82931 * 140.87068 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 8 1.0119 1.0874 2.3632 7 7 1.9846 -0.3919 3.7001 8 6 1.5966 0.3644 4.8933 9 6 2.0431 -0.3935 6.1452 10 7 3.4804 -0.6658 6.0666 11 6 4.3685 0.3706 5.9549 12 1 4.0191 1.3905 6.0197 13 6 5.7177 0.1103 5.7584 14 7 6.1436 -1.1326 5.6799 15 14 6.9291 1.5241 5.6053 16 1 6.2029 2.8136 5.7280 17 1 7.9453 1.4242 6.6836 18 1 7.6022 1.4583 4.2833 19 6 1.7488 0.4501 7.3894 20 6 2.1272 -0.3490 8.6393 21 8 1.4014 -1.5798 8.6542 22 6 1.6728 -2.4307 7.5387 23 6 1.2758 -1.7155 6.2446 24 6 2.0399 -0.7213 -1.2493 25 1 1.6745 -1.7481 -1.2682 26 6 1.5937 0.0342 -2.5263 27 6 2.6823 -0.4233 -3.5350 28 6 3.9299 -0.5516 -2.6348 29 8 3.4758 -0.7024 -1.2848 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 3.1263 -0.7996 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 2.4884 -1.2158 3.7907 36 1 0.5137 0.4870 4.9096 37 1 2.0729 1.3447 4.8729 38 1 3.8031 -1.5801 6.0938 39 1 7.0864 -1.3145 5.5421 40 1 0.6870 0.6944 7.4209 41 1 2.3340 1.3689 7.3535 42 1 1.8799 0.2296 9.5293 43 1 3.1968 -0.5579 8.6271 44 1 2.7365 -2.6670 7.5119 45 1 1.0983 -3.3520 7.6359 46 1 1.5229 -2.3452 5.3898 47 1 0.2044 -1.5151 6.2530 48 1 0.6022 -0.2864 -2.8461 49 1 1.6261 1.1133 -2.3758 50 1 2.8370 0.3304 -4.3072 51 1 2.4242 -1.3844 -3.9797 52 1 4.5421 0.3461 -2.7210 53 1 4.5102 -1.4261 -2.9296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484190884.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:16 Heat of formation + Delta-G solvation = -154.280236 kcal Electronic energy + Delta-G solvation = -31591.671747 eV Core-core repulsion = 27462.019395 eV Total energy + Delta-G solvation = -4129.652352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.23160 -40.64429 -39.95499 -37.36116 -35.76075 -35.02321 -33.85357 -33.01018 -31.98387 -30.96674 -30.03594 -28.72062 -27.48878 -25.94062 -24.54362 -24.25860 -23.30707 -22.46535 -21.44484 -20.84158 -20.10082 -19.11833 -18.18589 -17.63715 -17.16177 -17.03515 -16.80369 -16.61940 -16.52102 -16.13106 -15.89174 -15.77780 -15.42869 -15.27252 -14.91311 -14.55456 -14.24527 -14.06913 -13.97150 -13.72088 -13.64368 -13.33698 -13.16495 -12.99174 -12.89088 -12.80401 -12.69658 -12.65192 -12.23640 -12.21842 -12.12038 -12.08892 -11.78520 -11.72665 -11.64377 -11.60973 -11.50616 -11.13693 -10.96436 -10.64112 -10.40294 -10.32447 -9.83389 -8.98309 -7.92486 -5.18281 1.41755 1.46210 1.51336 1.77260 2.41695 2.55701 2.88663 3.07064 3.41420 3.58695 3.70073 3.75042 3.86752 3.88304 4.00901 4.02343 4.10833 4.14877 4.18108 4.23755 4.34781 4.40823 4.46917 4.50285 4.61152 4.66300 4.72806 4.77681 4.79327 4.82423 4.83932 4.86165 4.88962 4.92129 4.99471 5.01002 5.03311 5.09490 5.15927 5.22417 5.24282 5.28177 5.34028 5.39227 5.45408 5.59741 5.69880 6.17049 6.29824 6.36147 6.73016 7.38905 7.39889 8.08115 8.34966 9.29775 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010764 B = 0.003302 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.603375 B = 8476.477549 C =10156.278015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.067 4.067 3 H 0.053 0.947 4 C -0.128 4.128 5 C 0.506 3.494 6 O -0.585 6.585 7 N -0.701 5.701 8 C 0.128 3.872 9 C 0.187 3.813 10 N -0.712 5.712 11 C -0.212 4.212 12 H 0.064 0.936 13 C -0.058 4.058 14 N -0.957 5.957 15 Si 0.945 3.055 16 H -0.277 1.277 17 H -0.295 1.295 18 H -0.302 1.302 19 C -0.152 4.152 20 C 0.075 3.925 21 O -0.396 6.396 22 C 0.064 3.936 23 C -0.142 4.142 24 C 0.082 3.918 25 H 0.085 0.915 26 C -0.147 4.147 27 C -0.148 4.148 28 C 0.039 3.961 29 O -0.410 6.410 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.405 0.595 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.377 0.623 39 H 0.248 0.752 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.113 0.887 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.105 0.895 49 H 0.071 0.929 50 H 0.094 0.906 51 H 0.091 0.909 52 H 0.063 0.937 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.860 -3.703 -12.901 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.167 4.167 5 C 0.294 3.706 6 O -0.467 6.467 7 N -0.350 5.350 8 C 0.002 3.998 9 C 0.096 3.904 10 N -0.354 5.354 11 C -0.344 4.344 12 H 0.082 0.918 13 C -0.251 4.251 14 N -0.608 5.608 15 Si 0.777 3.223 16 H -0.202 1.202 17 H -0.223 1.223 18 H -0.230 1.230 19 C -0.192 4.192 20 C -0.001 4.001 21 O -0.316 6.316 22 C -0.012 4.012 23 C -0.180 4.180 24 C 0.025 3.975 25 H 0.103 0.897 26 C -0.184 4.184 27 C -0.185 4.185 28 C -0.038 4.038 29 O -0.330 6.330 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.241 0.759 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.211 0.789 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.131 0.869 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.123 0.877 49 H 0.089 0.911 50 H 0.113 0.887 51 H 0.109 0.891 52 H 0.081 0.919 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.220 -2.878 -12.655 18.526 hybrid contribution 1.997 0.563 -0.224 2.087 sum -11.223 -2.314 -12.879 17.239 Atomic orbital electron populations 1.21828 0.92755 1.02549 1.02779 1.20949 0.97103 0.98519 0.92015 0.92891 1.21656 1.03005 1.00591 0.91481 1.21114 0.78501 0.85480 0.85477 1.90586 1.42679 1.26184 1.87252 1.45814 1.56157 1.27730 1.05326 1.21585 0.98012 0.94623 0.85611 1.20031 0.84443 0.94174 0.91726 1.42506 0.99704 1.05771 1.87373 1.19217 0.88266 0.88479 1.38471 0.91812 1.25154 0.98531 0.97332 1.04127 1.69741 1.14170 1.18038 1.58846 0.85487 0.80110 0.80293 0.76365 1.20166 1.22274 1.22977 1.22453 1.01327 0.99372 0.96077 1.22373 0.95195 0.84777 0.97786 1.87802 1.67587 1.30523 1.45649 1.22588 1.00098 0.93351 0.85190 1.22302 1.00764 0.96012 0.98922 1.23164 0.80232 0.99308 0.94769 0.89712 1.23301 1.00682 1.00773 0.93670 1.23115 0.93536 1.03616 0.98238 1.23294 0.97531 1.01502 0.81437 1.88437 1.21790 1.94823 1.27973 0.91320 0.92705 0.91273 0.89654 0.86814 0.75903 0.91702 0.95092 0.78869 0.94323 0.90361 0.92266 0.88176 0.94567 0.94451 0.86902 0.90183 0.89338 0.87704 0.91062 0.88727 0.89057 0.91898 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.74 71.98 0.63 -2.47 16 2 C -0.07 -1.70 1.80 -10.79 -0.02 -1.72 16 3 H 0.05 1.66 7.95 -2.39 -0.02 1.64 16 4 C -0.13 -3.58 5.11 29.85 0.15 -3.43 16 5 C 0.51 17.63 7.55 87.66 0.66 18.29 16 6 O -0.59 -23.58 13.97 -3.03 -0.04 -23.62 16 7 N -0.70 -24.34 5.13 -463.06 -2.38 -26.72 16 8 C 0.13 4.62 4.32 86.38 0.37 5.00 16 9 C 0.19 6.47 0.41 3.72 0.00 6.48 16 10 N -0.71 -30.80 3.66 -302.82 -1.11 -31.91 16 11 C -0.21 -10.75 8.70 84.03 0.73 -10.02 16 12 H 0.06 3.30 6.76 -2.91 -0.02 3.28 16 13 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 14 N -0.96 -54.75 13.07 21.65 0.28 -54.47 16 15 Si 0.95 45.96 29.55 68.60 2.03 47.98 16 16 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 18 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 19 C -0.15 -5.07 4.83 30.69 0.15 -4.92 16 20 C 0.08 2.50 6.68 72.01 0.48 2.98 16 21 O -0.40 -12.79 10.77 -148.98 -1.60 -14.39 16 22 C 0.06 1.87 6.67 72.01 0.48 2.35 16 23 C -0.14 -4.01 4.80 30.68 0.15 -3.86 16 24 C 0.08 1.73 2.96 31.26 0.09 1.82 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 C -0.15 -2.30 5.55 32.05 0.18 -2.12 16 27 C -0.15 -1.97 7.02 31.85 0.22 -1.75 16 28 C 0.04 0.75 7.79 72.45 0.56 1.31 16 29 O -0.41 -10.91 10.39 -148.98 -1.55 -12.45 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.53 5.95 -2.39 -0.01 1.52 16 32 H 0.07 1.25 7.28 -2.39 -0.02 1.23 16 33 H 0.09 2.70 7.62 -2.39 -0.02 2.68 16 34 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.41 13.82 7.41 -92.71 -0.69 13.14 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.03 1.31 7.53 -2.39 -0.02 1.30 16 38 H 0.38 17.57 6.71 -92.71 -0.62 16.95 16 39 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.06 2.17 7.14 -2.39 -0.02 2.15 16 42 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.04 1.42 7.75 -2.39 -0.02 1.40 16 44 H 0.04 1.26 7.08 -2.39 -0.02 1.24 16 45 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 46 H 0.08 2.13 7.36 -2.38 -0.02 2.11 16 47 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.10 1.18 8.05 -2.39 -0.02 1.16 16 49 H 0.07 1.25 8.06 -2.39 -0.02 1.23 16 50 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 51 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 53 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -65.33 404.96 0.54 -64.80 By element: Atomic # 1 Polarization: 45.95 SS G_CDS: -0.41 Total: 45.55 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 5.31 Total: 5.23 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -3.20 Total: -113.09 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -3.19 Total: -50.47 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -65.33 0.54 -64.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484190884.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.483 kcal (2) G-P(sol) polarization free energy of solvation -65.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds