Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47214 * 2 1 4 4 C 1.52999 * 109.47421 * 239.99410 * 2 1 3 5 5 C 1.50699 * 109.46939 * 65.00389 * 4 2 1 6 6 O 1.21278 * 119.99806 * 359.97438 * 5 4 2 7 7 N 1.34773 * 120.00122 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99947 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47016 * 184.96431 * 8 7 5 10 10 N 1.46498 * 109.54612 * 305.16404 * 9 8 7 11 11 C 1.36931 * 119.99977 * 302.36728 * 10 9 8 12 12 H 1.08005 * 120.00454 * 354.42563 * 11 10 9 13 13 C 1.38818 * 120.00033 * 174.42424 * 11 10 9 14 14 N 1.31615 * 119.99822 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99825 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47060 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46787 * 119.99793 * 15 13 11 18 18 H 1.48500 * 109.47044 * 239.99682 * 15 13 11 19 19 C 1.53199 * 109.54094 * 184.90000 * 9 8 7 20 20 C 1.53094 * 109.15113 * 183.15893 * 19 9 8 21 21 O 1.42907 * 109.42437 * 57.60848 * 20 19 9 22 22 C 1.42905 * 114.09350 * 298.83124 * 21 20 19 23 23 C 1.53093 * 109.41262 * 61.16057 * 22 21 20 24 24 C 1.53004 * 109.46986 * 119.99514 * 2 1 3 25 25 H 1.08999 * 109.87088 * 179.29305 * 24 2 1 26 26 C 1.54101 * 109.88178 * 300.30960 * 24 2 1 27 27 C 1.54808 * 104.19086 * 121.45032 * 26 24 2 28 28 C 1.55002 * 102.09133 * 20.88292 * 27 26 24 29 29 O 1.43750 * 109.87543 * 58.29611 * 24 2 1 30 30 H 1.09001 * 109.47214 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47619 * 300.00158 * 1 2 3 32 32 H 1.09004 * 109.47220 * 60.00794 * 1 2 3 33 33 H 1.08998 * 109.47344 * 305.00372 * 4 2 1 34 34 H 1.08997 * 109.46969 * 184.99962 * 4 2 1 35 35 H 0.96998 * 119.99968 * 359.97438 * 7 5 4 36 36 H 1.09004 * 109.47070 * 64.96713 * 8 7 5 37 37 H 1.08999 * 109.47316 * 304.96823 * 8 7 5 38 38 H 0.97002 * 119.99776 * 122.36024 * 10 9 8 39 39 H 0.97002 * 119.99530 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.53374 * 63.25596 * 19 9 8 41 41 H 1.08993 * 109.52466 * 303.05759 * 19 9 8 42 42 H 1.08997 * 109.48249 * 297.61759 * 20 19 9 43 43 H 1.09003 * 109.48196 * 177.59603 * 20 19 9 44 44 H 1.09002 * 109.48016 * 181.13901 * 22 21 20 45 45 H 1.09000 * 109.48250 * 301.16781 * 22 21 20 46 46 H 1.09008 * 109.52497 * 62.29641 * 23 22 21 47 47 H 1.09002 * 109.52453 * 182.47862 * 23 22 21 48 48 H 1.09004 * 110.48465 * 240.13100 * 26 24 2 49 49 H 1.09001 * 110.48357 * 2.77309 * 26 24 2 50 50 H 1.09000 * 110.90870 * 139.07787 * 27 26 24 51 51 H 1.09000 * 110.90813 * 262.65154 * 27 26 24 52 52 H 1.08994 * 110.61850 * 81.47410 * 28 27 26 53 53 H 1.08997 * 110.61569 * 204.47672 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0569 -2.4765 6 8 1.0110 1.0868 -2.3633 7 7 1.9846 -0.3921 -3.7001 8 6 1.5966 0.3642 -4.8933 9 6 1.9971 -0.4183 -6.1456 10 7 3.4267 -0.7333 -6.0903 11 6 4.3460 0.2750 -5.9752 12 1 4.0253 1.3055 -6.0157 13 6 5.6903 -0.0273 -5.8064 14 7 6.0812 -1.2831 -5.7566 15 14 6.9446 1.3482 -5.6501 16 1 6.2539 2.6600 -5.7370 17 1 7.6374 1.2399 -4.3411 18 1 7.9392 1.2382 -6.7472 19 6 1.7038 0.4236 -7.3915 20 6 2.0337 -0.3968 -8.6412 21 8 1.2709 -1.6053 -8.6313 22 6 1.5384 -2.4549 -7.5137 23 6 1.1886 -1.7173 -6.2186 24 6 2.0399 -0.7212 1.2493 25 1 3.1298 -0.7360 1.2497 26 6 1.5250 -0.0065 2.5138 27 6 0.7283 -1.0981 3.2689 28 6 1.3134 -2.4015 2.6676 29 8 1.5330 -2.0660 1.2785 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.6054 -1.7199 -1.2950 34 1 3.1263 -0.7995 -1.2054 35 1 2.4884 -1.2160 -3.7906 36 1 2.1017 1.3301 -4.8914 37 1 0.5176 0.5184 -4.8908 38 1 3.7221 -1.6562 -6.1352 39 1 7.0205 -1.4944 -5.6382 40 1 2.3169 1.3247 -7.3750 41 1 0.6495 0.6995 -7.4047 42 1 3.0966 -0.6379 -8.6476 43 1 1.7868 0.1816 -9.5314 44 1 0.9345 -3.3589 -7.5916 45 1 2.5949 -2.7230 -7.5056 46 1 0.1237 -1.4846 -6.2081 47 1 1.4332 -2.3471 -5.3633 48 1 2.3600 0.3446 3.1202 49 1 0.8727 0.8239 2.2437 50 1 0.9167 -1.0457 4.3412 51 1 -0.3382 -1.0167 3.0587 52 1 2.2554 -2.6585 3.1519 53 1 0.5989 -3.2198 2.7569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484190885.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -151.095201 kcal Electronic energy + Delta-G solvation = -31635.040991 eV Core-core repulsion = 27505.526753 eV Total energy + Delta-G solvation = -4129.514238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.25930 -40.68741 -39.93605 -37.35345 -35.54860 -34.99808 -33.85272 -32.94558 -31.98733 -30.96791 -29.96620 -28.73280 -27.52155 -25.93550 -24.67291 -24.35591 -23.37618 -22.44309 -21.28215 -20.70904 -20.09367 -19.11068 -18.08669 -17.37001 -17.14891 -17.03272 -16.78870 -16.69944 -16.44128 -16.14614 -16.09104 -15.83237 -15.40998 -15.28686 -14.90636 -14.61608 -14.28678 -14.15265 -13.93067 -13.72270 -13.65207 -13.21809 -13.15401 -12.94482 -12.87704 -12.70641 -12.66561 -12.47914 -12.23841 -12.20997 -12.15309 -12.09145 -11.72466 -11.71567 -11.66698 -11.52218 -11.43128 -11.14308 -10.95673 -10.67539 -10.49310 -10.33046 -9.82911 -8.98220 -7.91247 -5.17566 1.43294 1.47690 1.53186 1.77792 2.41477 2.56664 2.99669 3.06446 3.42250 3.65733 3.73774 3.75008 3.87990 3.90650 4.00450 4.05166 4.07560 4.13033 4.15257 4.23123 4.37067 4.44365 4.45842 4.54474 4.60292 4.68590 4.76847 4.77147 4.79272 4.83205 4.83890 4.88259 4.88864 4.96341 4.99626 5.02443 5.04624 5.09052 5.19270 5.21885 5.27337 5.29029 5.33455 5.33876 5.48088 5.60656 5.70486 6.04429 6.30435 6.35518 6.73314 7.39052 7.40337 8.08315 8.35704 9.30934 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011118 B = 0.003150 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.923453 B = 8886.801023 C =10266.242673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 H 0.074 0.926 4 C -0.126 4.126 5 C 0.506 3.494 6 O -0.584 6.584 7 N -0.701 5.701 8 C 0.129 3.871 9 C 0.187 3.813 10 N -0.713 5.713 11 C -0.212 4.212 12 H 0.065 0.935 13 C -0.059 4.059 14 N -0.958 5.958 15 Si 0.947 3.053 16 H -0.277 1.277 17 H -0.300 1.300 18 H -0.297 1.297 19 C -0.153 4.153 20 C 0.075 3.925 21 O -0.397 6.397 22 C 0.065 3.935 23 C -0.143 4.143 24 C 0.080 3.920 25 H 0.067 0.933 26 C -0.153 4.153 27 C -0.148 4.148 28 C 0.038 3.962 29 O -0.390 6.390 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.405 0.595 36 H 0.034 0.966 37 H 0.063 0.937 38 H 0.377 0.623 39 H 0.248 0.752 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.036 0.964 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.038 0.962 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.081 0.919 50 H 0.096 0.904 51 H 0.076 0.924 52 H 0.066 0.934 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.153 -2.793 13.049 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 H 0.092 0.908 4 C -0.166 4.166 5 C 0.294 3.706 6 O -0.466 6.466 7 N -0.351 5.351 8 C 0.002 3.998 9 C 0.097 3.903 10 N -0.354 5.354 11 C -0.344 4.344 12 H 0.083 0.917 13 C -0.252 4.252 14 N -0.608 5.608 15 Si 0.779 3.221 16 H -0.202 1.202 17 H -0.227 1.227 18 H -0.225 1.225 19 C -0.193 4.193 20 C -0.002 4.002 21 O -0.316 6.316 22 C -0.012 4.012 23 C -0.181 4.181 24 C 0.022 3.978 25 H 0.084 0.916 26 C -0.190 4.190 27 C -0.185 4.185 28 C -0.038 4.038 29 O -0.310 6.310 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.241 0.759 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.211 0.789 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.118 0.882 44 H 0.130 0.870 45 H 0.056 0.944 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.115 0.885 51 H 0.094 0.906 52 H 0.084 0.916 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.685 -2.084 12.800 18.141 hybrid contribution 1.959 0.471 0.193 2.024 sum -10.726 -1.613 12.993 16.925 Atomic orbital electron populations 1.21767 0.94199 1.01579 1.01897 1.21003 0.97339 0.98367 0.91959 0.90774 1.21634 1.02933 1.00496 0.91504 1.21115 0.78578 0.85425 0.85474 1.90587 1.42494 1.26269 1.87250 1.45829 1.56175 1.27750 1.05321 1.21569 0.98013 0.94641 0.85545 1.20020 0.84602 0.93911 0.91788 1.42516 0.99526 1.05975 1.87360 1.19227 0.87770 0.88681 1.38766 0.91737 1.25168 0.98600 0.97217 1.04184 1.69752 1.15044 1.16913 1.59140 0.85461 0.80192 0.80014 0.76412 1.20154 1.22725 1.22506 1.22465 1.01365 0.99333 0.96108 1.22383 0.94758 0.85214 0.97811 1.87806 1.65399 1.32328 1.46059 1.22580 1.00306 0.93212 0.85094 1.22301 1.00523 0.96330 0.98906 1.22801 0.97475 0.82555 0.94951 0.91553 1.23042 1.01081 0.99387 0.95498 1.23101 1.00485 0.93794 1.01133 1.23763 1.00555 0.98194 0.81318 1.88911 1.85945 1.29705 1.26427 0.92725 0.91872 0.93151 0.87727 0.88995 0.75877 0.94796 0.91903 0.78874 0.94319 0.92124 0.90467 0.94515 0.88151 0.87004 0.94361 0.89551 0.90330 0.89604 0.90076 0.88515 0.90562 0.91573 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.51 71.98 0.61 -2.81 16 2 C -0.07 -1.71 1.83 -10.80 -0.02 -1.73 16 3 H 0.07 2.04 7.96 -2.39 -0.02 2.02 16 4 C -0.13 -3.51 4.99 29.85 0.15 -3.36 16 5 C 0.51 17.45 7.55 87.66 0.66 18.11 16 6 O -0.58 -23.24 13.96 -3.02 -0.04 -23.28 16 7 N -0.70 -24.29 5.12 -463.06 -2.37 -26.66 16 8 C 0.13 4.63 4.29 86.38 0.37 5.00 16 9 C 0.19 6.49 0.41 3.73 0.00 6.49 16 10 N -0.71 -30.50 3.66 -302.77 -1.11 -31.61 16 11 C -0.21 -10.57 8.70 84.04 0.73 -9.83 16 12 H 0.06 3.27 6.77 -2.91 -0.02 3.25 16 13 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 14 N -0.96 -53.91 13.07 21.65 0.28 -53.63 16 15 Si 0.95 44.90 29.55 68.60 2.03 46.92 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 17 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 18 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 19 C -0.15 -5.06 4.85 30.69 0.15 -4.92 16 20 C 0.07 2.48 6.68 72.01 0.48 2.96 16 21 O -0.40 -12.89 10.77 -148.98 -1.60 -14.49 16 22 C 0.06 1.91 6.67 72.01 0.48 2.39 16 23 C -0.14 -4.11 4.81 30.69 0.15 -3.97 16 24 C 0.08 1.68 3.15 30.97 0.10 1.77 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 C -0.15 -2.41 6.15 31.58 0.19 -2.22 16 27 C -0.15 -1.89 7.16 31.90 0.23 -1.66 16 28 C 0.04 0.58 7.72 72.67 0.56 1.14 16 29 O -0.39 -8.69 10.00 -148.98 -1.49 -10.18 16 30 H 0.05 1.34 7.66 -2.39 -0.02 1.32 16 31 H 0.06 1.34 6.39 -2.39 -0.02 1.33 16 32 H 0.05 1.52 5.95 -2.38 -0.01 1.51 16 33 H 0.10 2.72 7.89 -2.39 -0.02 2.70 16 34 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.41 13.92 7.45 -92.71 -0.69 13.23 16 36 H 0.03 1.41 7.45 -2.38 -0.02 1.40 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.38 17.46 6.67 -92.71 -0.62 16.84 16 39 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 40 H 0.06 2.19 7.24 -2.39 -0.02 2.18 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 42 H 0.04 1.43 7.75 -2.39 -0.02 1.41 16 43 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 44 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.04 1.29 7.05 -2.39 -0.02 1.28 16 46 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 47 H 0.08 2.17 7.41 -2.39 -0.02 2.15 16 48 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 49 H 0.08 1.32 6.22 -2.39 -0.01 1.31 16 50 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 53 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -62.11 402.26 0.61 -61.50 By element: Atomic # 1 Polarization: 47.12 SS G_CDS: -0.40 Total: 46.72 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 5.31 Total: 4.70 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -3.19 Total: -111.90 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -3.14 Total: -47.95 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -62.11 0.61 -61.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484190885.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.596 kcal (2) G-P(sol) polarization free energy of solvation -62.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds